Machine Learning · Cross-listed from eess.SP
Large language models in medical time series analysis
Yu Han, Cigdem Beyan, Xiang Zhang et al. (+6 more)
Medical time series (MedTS), including electrocardiograms (ECG), electroencephalograms (
EEG), photoplethysmography (PPG), and vital-sign recordings, are central to clinical diagnosis and health monitoring. As large
language models (LLMs) have advanced, a growing body of work has examined how their
reasoning, generation, and knowledge-integration capabilities can support MedTS analysis. Yet existing studies remain scattered, and the field still lacks a clear view of how these models should be designed, integrated into clinical workflows, and evaluated. This review synthesizes recent work on large
language models for medical time series analysis (MedTSLLMs), covering both methodological progress and issues related to real-world deployment. We review model architectures, data resources, and processing pipelines, and
prompt design strategies adapted for diverse clinical scenarios. We further organize existing MedTS applications, ranging from diagnostic interpretation and report generation to longitudinal health monitoring and physiological signal synthesis, highlighting task-specific design choices, common evaluation protocols, and empirical findings reported across studies. By bringing together current practices and open challenges, this review aims to provide a clearer foundation for developing, evaluating, and deploying MedTSLLMs responsibly in healthcare. We also maintain a regularly updated list of MedTSLLM studies and resources at: https://github.com/hy727/MedTSLLM-Review.
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All authors Yu Han, Cigdem Beyan, Xiang Zhang, Xiaofeng Liu, Nan Liu, Jimeng Sun, Shenda Hong, Cheng Ding, Vittorio Murino
Machine Learning · Cross-listed from gr-qc
Survey of Novel Deep Learning Architectures for Denoising Gravitational-wave Signals
Rohan Raha and Prayush Kumar
Gravitational-wave denoising must handle the full diversity of spinning, precessing binaries, since the recovered waveform underpins parameter estimation, tests of general relativity, and population studies. Matched filtering achieves this at a cost that becomes prohibitive as next-generation detectors push event rates higher; deep learning offers real-time reconstruction, but current methods are developed on narrow parameter spaces, precluding principled comparison and reliable deployment. We present the first controlled comparison of five neural-network architectures for gravitational-wave denoising, trained identically across the full astrophysically-motivated spinning binary-black-hole parameter space. A unifying principle emerges: matching network structure to the spectral anatomy of a coalescence – inspiral, merger, ringdown – outperforms brute-force model scaling. Our Multi-Scale Frequency-Aware architecture embodies this via dedicated parallel branches per frequency regime, achieving the best fidelity while using fewer parameters than larger models. It generalizes from simulated training to real LIGO-Virgo-KAGRA data without retraining, recovering merger morphology across confirmed events spanning three observing runs and both detectors, despite training on a single detector's simulated noise. We construct population-level uncertainty bands from denoising residuals, validate their calibration, and stress-test the framework on extended mass ratios and a
spin population resembling hierarchical-merger remnants. Applied to real noise with no known signal, the network suppresses its output almost everywhere, with rare exceptions traced to noise transients rather than a general weakness – indicating the statistic discriminates signal from noise and motivating a future detection study. Released weights give a deployable, reproducible
benchmark for future extensions.
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Machine Learning · Cross-listed from cs.CV
CANAL: Channel-Aware Noise Allocation for Differentially Private Feature Distillation in Medical Image Segmentation
Armaghan Butt, Shuya Feng and Qing Tian
Medical image
segmentation needs diverse training data, but hospitals hold complementary scans they cannot share for
privacy and regulatory reasons. Knowledge
distillation can bridge this gap by exporting learned feature representations instead of images, but those representations still encode patient-specific anatomy and remain vulnerable to membership-inference and feature-inversion attacks. Adding calibrated Gaussian noise restores a differential-
privacy guarantee, yet three issues have been overlooked. First, prior DP feature-
distillation pipelines re-sample noise at every student iteration, so each patient image is released many times and the
privacy cost composes over those releases, growing by orders of magnitude. We present a sample-once-per-image release, realized by a single precomputation pass, under which each patient contributes one release. Second, uniform noise is wasteful because channels differ in task importance. Using task-gradient energy as the importance measure, we derive CANAL, a closed-form water-filling allocation that gives important channels proportionally less noise, and prove it strictly minimizes importance-weighted distortion at a fixed budget. Third, the clipping caps and importance scores that drive the allocation are themselves data-dependent, so releasing them in the clear silently breaks the guarantee. We give a DP-honest budget split that charges each to the
privacy budget, so the reported epsilon is the true epsilon. Across three medical
segmentation benchmarks spanning dermoscopy, colonoscopy, and ultrasound, CANAL retains more task-relevant signal than uniform noise at the same
privacy budget.
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Machine Learning · Cross-listed from cs.CV
Frame-Synchronous Hand Gesture Detection by Projected Winding Order
Amey Thakur
Gesture recognition on
video is normally posed as classification: label each frame, then act on the label. That is adequate for control, where a command may be obeyed several frames late without a user noticing, and inadequate for synchronisation, where an output must be aligned to the frame on which the gesture physically occurred. We take the synchronisation problem for one common movement, the rotation of an open hand about its long axis, and show that it admits an exact solution needing no classifier, no training data and no calibration. Let s be the normalised two-dimensional cross product of the two palm edges at the wrist and the outer knuckles, under the projection the camera already performs. We prove that s factorises as k(theta)cos(theta) with |k| > 0 everywhere, so s vanishes exactly when the palm is edge-on and its sign tracks the face presented to the camera. Detection is therefore a zero crossing of one scalar, which yields an instant rather than an interval, and we prove the criterion invariant to image mirroring, hand scale and handedness, all from its algebraic form rather than from the landmark
estimator. A two-handed interaction uses four fingertips as a window onto a restyled version of the same scene. We give a coverage predicate that stays correct when the hands cross, where the usual triangulation does not, and derive each free parameter of the three stylisation operators from a noise statistic rather than by inspection. Against a corpus with exact ground truth the criterion detects 95% of flips with no false positive in 240 near-miss sequences, and places each within 6.7 ms on average of the instant it occurred, a sixth of the interval at which the hand is observed, against 23.0 ms for reporting the bracketing sample. Reporting an event more finely than one samples follows from treating a gesture as the zero of a continuous quantity rather than a label.
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Machine Learning · Cross-listed from cs.CR
An Empirical Measurement of Jailbreaking Evaluators
Yujie Mu
Expert evaluation of jailbreak responses is costly and difficult to scale, so the community increasingly relies on automated evaluators to determine whether an attack succeeds. However, jailbreak studies typically validate their chosen evaluator independently, repeatedly spending resources on similar evaluation efforts while making results across papers difficult to compare. Different evaluators also encode different definitions of jailbreak success, meaning that reported attack strength and apparent progress can depend substantially on which evaluator is used. We systematically compare six evaluators that recur in recent jailbreak attack and defense research: HarmBench, JailbreakBench, JailbreakRadar, StrongReject, JADES, and JailMeter. To our knowledge, no prior study has evaluated all six on the same human-labeled data under a controlled setup. We evaluate them on JailbreakQR and JailMeter-Eva, using human judgments as the reference, and measure agreement with humans, error types, and consistency across attack families. For evaluators that require a general-purpose LLM judge, we use a shared backbone to control for model-specific variation. We found that JADES exhibits the best overall performance, while HarmBench and StrongReject also demonstrate good performance.
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Machine Learning · Cross-listed from cs.SE
Cost-Aware Post-Hoc Deferral Under Calibration and Shift: An Environmental AI Case Study
Haoran Yu, Lifei Liu and Danping Zhang
Choosing a deferral policy for a frozen classifier requires more than ranking uncertain cases: confidence may be miscalibrated, errors have unequal costs, reviewers can err, and deployment data can leave calibration support. We study these interactions through EcoTrust, a post-hoc framework that compares automatic action with review using a six-group error-risk
estimator, class-asymmetric costs, reviewer accuracy, and an optional support gate. On a Columbia River thermal-stress testbed, the learned
estimator improves error-ranking area under the receiver operating characteristic curve from 0.869 to 0.889, but Chow's confidence rule has lower in-distribution cost (0.416 versus 0.567 per day). Across 12 off-the-shelf backends, learned risk and a calibration-matched, class-aware confidence
estimator each beat raw Chow on six; a paired year-block bootstrap does not resolve their mean cost difference. In transfer to ten river stations, the gate flags every case and becomes an always-review fallback, attaining the lowest cost on eight stations only when review is perfect and unconstrained. These results characterize decision boundaries on one controlled task: richer risk signals do not reliably improve on calibrated confidence, and detected extrapolation does not imply transferable case-level ranking.
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Machine Learning · Cross-listed from cs.RO
Learning to Fly: Stable Vision-Guided UAV Servoing with Compact Target-Centric Cues and Reinforcement Learning
Saurbh Singh Jamwal and Nived Chebrolu
Vision-guided reinforcement learning for Unmanned Aerial Vehicles (
UAVs) remains challenging due to unstable policy optimisation, aggressive exploration, and the cost of high-dimensional visual perception. In this work, we investigate long-horizon
UAV visual servoing using compact target-centric cues combined with low-dimensional sensor measurements. Rather than learning directly from RGB images, lightweight target
segmentation provides image-space offsets and relative depth, which are combined with quadrotor velocity and projected-
gravity measurements into a compact 12D policy observation. We compare Direct PPO with three matched-budget curriculum strategies: a Visual curriculum that progressively expands target placement difficulty, a Dynamics curriculum that gradually relaxes action constraints and smoothing, and a Joint curriculum that combines both progressions. All strategies reach comparable nominal performance, with complementary advantages across tracking metrics. Observation ablations show that proprioceptive measurements are critical for stable flight and image-space cues for target
alignment, while explicit depth is not necessary for strong performance in the evaluated setting. Against tuned classical visual-servo controllers, learned policies show greater robustness to strong control and visual perturbations, while the Visual curriculum exhibits the smallest degradation under unseen target motion. Overall, the results demonstrate that compact target-centric representations can support robust long-horizon aerial visual servoing and that visual curriculum training can improve robustness to dynamic distribution shifts despite limited gains in nominal performance.
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Machine Learning · Cross-listed from cs.AI
Subagents vs Agent Skills: Executing Reusable Knowledge for Long-Horizon Agentic Tasks
Wasu Top Piriyakulkij, Rachel Lawrence, Alicia Curth et al. (+2 more)
How can
language model
agents effectively leverage libraries of reusable knowledge to solve long-horizon tasks? Recent work has increasingly focused on
agent skills: reusable capabilities represented as skill packages, i.e., multi-file bundles containing instructions, scripts, and other resources that help
agents perform specific tasks.
Agent skills are typically executed by loading their skill instructions into an
agent's context and relying on the
agent to follow them. As task horizons grow, however, this approach becomes increasingly brittle, because
reasoning quality degrades as more information accumulates in the context window. We investigate an alternative approach in which skill packages are instead invoked as subagents. Rather than loading skill instructions into the main context, subagent execution spawns fresh context windows dedicated to solving individual subtasks. We show that subagent execution outperforms
agent-skill execution when skill packages expose clear input-output contracts and their instructions encode the procedural knowledge needed to fulfill those contracts. The tradeoff is additional communication overhead, as extra
tokens are required to coordinate between the main
agent and its subagents. Our results show that the benefit of reusable knowledge depends not only on its content, but also on how it is organized and invoked.
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All authors Wasu Top Piriyakulkij, Rachel Lawrence, Alicia Curth, Sushrut Karmalkar, Niranjani Prasad
Machine Learning · Cross-listed from q-bio.QM
MI-PEFT: Mixture-of-Experts Integrated Parameter-Efficient Fine-Tuning Protein Language Models Improves Acidophilic Proteins Classification
Honghan Shen
Acidophilic
proteins that remain stable and functional under highly acidic conditions, are important for industrial biocatalysis, acid-related bioprocessing, and the discovery of acid-stable enzymes. However, their identification relies heavily on time-consuming experimental screening methods. With the rapid growth of
protein sequence databases, the need for computational identification methods that are both accurate and efficient has become stronger. The emergence of
protein language models (PLMs) has significantly improved the sequence representation of downstream biological prediction tasks. This paper proposes MI-PEFT, a mixture-of-experts integrated parameter-efficient fine-tuning framework. Built on the ESM C-600M backbone, the framework incorporates LoRA-based PEFT methods and a DeepSeekMoE-based classification head to resolve the limitations of PEFT and significantly improve computational efficiency. Notably, this task is characterized by a significant class imbalance in the
dataset, making high specificity particularly challenging. The experimental results demonstrate that MI-PEFT on PLMs, especially {\text{C}}^{\text{3}}\text{A}, serves as an efficient tool for identifying acidophilic
proteins and a constrained pathway that helps resolve class-imbalance by preserving the pretrained representations.
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Machine Learning · Cross-listed from stat.ME
Bayesian Matrix-Valued Graphs for Context-Dependent Multivariate Relationships
Papri Dey
Many scientific graphs attach several variables to each node, so a single scalar edge weight cannot describe direction-dependent interactions. We model each edge by a symmetric positive-definite (SPD)
matrix and infer a posterior over
matrix-valued graph geometries, which we call the
Bayesian matrix-valued graph (BMVG). We ask how these interactions reconfigure across contexts: how large the change is and which multivariate directions strengthen or weaken. The geodesic distance induced by the affine-invariant Riemannian metric (AIRM) quantifies deformation magnitude and generalized
eigenvalues resolve its signed directions.Against fused graphical lasso,
Bayesian multiple-GGM, and common principal components, BMVG is competitive on global precision recovery while retaining identifiable
matrix-valued edge structure and accurately recovering edge-level deformation directions. In controlled known-truth experiments, it resolves structural change with increasing sample size, including orientation changes that leave ordinary
eigenvalues unchanged. In one year of Bay Area weather data, the geometry of 12-hour change reconfigures spatial coupling about as much as whole seasons differ. In TCGA-BRCA, estrogen-receptor (ER)-associated reconfiguration concentrates on specific gene-module pairs and persists under graph-scaffold sparsification and removal of subgroup mean differences. These results establish posterior
matrix-valued edge geometry as a unified framework for quantifying and interpreting context-dependent multivariate reconfiguration.
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Machine Learning · Cross-listed from cs.CV
A Quantitative Evaluation Framework for Temporal Explainability in Echocardiographic Video Segmentation
Jiyoo Noh and Jonathan H. Chan
Deep learning has achieved state-of-the-art performance in echocardiographic
video segmentation, with an increasing number of models incorporating temporal information. However, quantitative evaluation of temporal explainability remains largely unexplored. We propose a quantitative framework for evaluating Grad-CAM explanations using four complementary metrics measuring temporal consistency, saliency motion, anatomical overlap, and temporal overlap. Using EchoNet-Dynamic, we compare a baseline 2D U-Net with ConvLSTM U-Net models trained across multiple temporal strides. While
segmentation performance remained comparable across all models, intermediate ConvLSTM explanations exhibited substantially lower saliency consistency and greater centroid motion than final prediction explanations. Temporal Bottleneck explanations were significantly more stable than Encoder Bottleneck explanations across all strides, while final ConvLSTM Decoder3 explanations were broadly comparable to those of the 2D U-Net. Importantly, conventional frame-wise explanation metrics cannot determine whether variation in intermediate explanations reflects meaningful temporal feature
evolution or explanation instability. These findings establish a preliminary quantitative framework for temporal explainability and motivate temporal-aware XAI methods that explicitly account for evolving representations in medical
video models.
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Machine Learning · Cross-listed from cs.CV
MamMA: A Mamba-Based Pedestrian Trajectory Prediction Algorithm Considering Occupancy Map and Pedestrian Awareness States
Juncen Long, Xiaofeng Jin, Gianluca Bardaro et al. (+2 more)
Many pedestrian trajectory prediction
algorithms have been proposed to improve the safety of
navigation for mobile
robots working in human-
robot coexistence environments. Some pedestrian trajectory prediction
algorithms extract information about obstacles near pedestrians from top-down view images to improve the accuracy of trajectory prediction. However, mobile
robots typically create local occupancy maps using
LiDAR, rather than top-down view images. Meanwhile, the
vision sensors on board
robots provide
egocentric view images, which contain fine-grained behavioral information about the pedestrians near the
robot. To better use the information collected by
LiDAR and on-board
vision sensors, we propose MamMA, a Mamba-based pedestrian trajectory prediction
algorithm considering occupancy maps and pedestrian awareness states. MamMA divides the occupancy map by patches and extracts obstacle features from each patch to create map features. Pedestrian awareness states are divided and considered, as some studies show that awareness states affect the perception and speed of pedestrians. Furthermore, a Mamba-based model is proposed to predict the future trajectories of pedestrians based on different types of features. Experiments on the STCrowd, SiT, JRDB, ETH, and UCY
datasets show that MamMA achieves better average displacement error and final displacement error than the state-of-the-art
algorithms.
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All authors Juncen Long, Xiaofeng Jin, Gianluca Bardaro, Simone Mentasti, Matteo Matteucci
Machine Learning · Cross-listed from cs.CR
VEX-Bench: Benchmarking LLM Agents for Assessing Exploitability of Software Supply Chain Vulnerabilities
Jiahao Shi, Edward Tsien, Yifeng Di et al. (+10 more)
The software supply chain has become an increasingly exposed attack surface because of its reliance on intricate yet fragile dependencies. Existing defenses such as GitHub Dependabot often raise many false alerts because their coarse-grained matching cannot determine whether a vulnerable dependency is actually exploitable. Security analysts typically spend substantial time assessing vulnerability exploitability case by case. Recent LLM
agents have emerged as promising candidates for this task given their advanced capabilities in coding and cybersecurity, yet no existing
benchmark evaluates them on it. Prior
benchmarks target zero-day settings, where
agents detect and exploit previously unknown vulnerabilities. In contrast, software supply chain security focuses on how known vulnerabilities in upstream dependencies affect downstream projects. This requires
agents to reason across repositories and determine whether an upstream vulnerability is exploitable in the downstream project. To address this gap, we introduce VEX-Bench, the first
benchmark for evaluating LLM
agents' ability to assess the exploitability of software supply chain vulnerabilities. It contains 75 real-world cases mined from GitHub and labeled by security experts, covering Python, Java, and Go. We evaluate nine models across three
agent harnesses. While GPT-5.5 and Claude Opus 4.6 reach approximately 80% F1 on binary vulnerability-status classification, only GPT-5.5 surpasses 70% macro-F1 on fine-grained justification classification. This gap highlights the challenge of moving beyond binary exploitability assessment to identifying fine-grained exploitability reasons. Code and data: https://github.com/steven1518/vex-bench
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All authors Jiahao Shi, Edward Tsien, Yifeng Di, Hongjiao Zhang, Yuan Tang, Ronit Dey, Ilona Shishov, Gal Netanel, Zvi Grinberg, Vladimir Belousov, Bat-Zion Rotman, Ilan Pinto, Tianyi Zhang
Machine Learning
Two-Scale Localized PCA-Net: Coarse-Global and Local-Residual Representations for Artifact-Reduced PDE Operator Learning
Mrigank Dhingra, Jordan Stout and Omer San
Localized dimensionality reduction improves the scalability of operator learning for high-dimensional partial differential equations (PDEs), but independently decoded local patches can introduce block offsets, interface mismatches, and spurious high-wavenumber content. We introduce Two-Scale Localized PCA-Net, which decomposes the solution into a coarse-global component and local residual corrections. A compact global PCA basis captures domain-scale structure, while nonoverlapping local PCA bases represent the remaining fine-scale residual. A block-balanced latent objective couples the two representations, and optional interface-aware fine-tuning further promotes continuity through reconstruction and trace losses. On Poisson
benchmarks, the two-scale representation substantially reduces reconstruction error and visible block artifacts relative to plain and overlap-based localized PCA-Net while approximately halving PCA fitting cost relative to overlap. On heterogeneous Darcy flow, it strongly reduces interface and discrete-residual errors, with more modest reconstruction gains. Ablations show that the primary improvement arises from the two-scale output representation, while interface-aware fine-tuning provides complementary continuity refinement. Overall, separating globally coherent structure from localized residual detail provides an efficient representation for artifact-reduced PDE operator learning.
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Machine Learning · Cross-listed from cs.CV
Flexible Motion Generation from Language and Style References
Kai Weixian Lan, Bodie Criswell, Briana Fedkiw et al. (+3 more)
We introduce FlexMoGen, a novel framework for flexible human motion synthesis conditioned on both natural
language descriptions and motion style references. Text
prompts are effective at defining semantic content, but they are often limited in capturing fine-grained style details such as timing, limb articulation, and expressive dynamics. A style example clip supplements the text by conveying these nuanced motion characteristics directly, enabling the model to preserve high-level intent while reproducing the desired stylistic traits. Given a text
prompt and a style example clip, FlexMoGen generates high-quality motions that preserve semantic content while faithfully reflecting the target style, offering users greater control over the animation generation process. Unlike prior methods that rely on discrete style labels and do not generalize to long or multi-style generation, FlexMoGen learns a variational style encoder without style supervision and supports long, time-varying, multi-style synthesis. Our framework jointly pre-trains the style encoder and a text-to-motion latent
diffusion model within a unified architecture, modulating motion style through a lightweight adaptation module. It integrates an efficient relative positional encoding scheme and is trained on both stylized and non-stylized
datasets, enabling strong generalization to unseen text-style combinations. Experiments show that FlexMoGen achieves the best balance between content fidelity and style reflection.
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All authors Kai Weixian Lan, Bodie Criswell, Briana Fedkiw, Zhan Zhang, Joseph Teran, Daniel Holden
Machine Learning
Sharp Structure-Agnostic Minimax Risk for Partial Linear Models
Haichen Hu and David Simchi-Levi
We characterize the sharp structure-agnostic minimax risk for coefficient estimation in the partial linear model when the outcome and treatment nuisances are learned by two distinct black-box learners, which resolves the open problem in double machine learning posed by Gu (2025). For each nuisance \(q\in\{\mu,\pi\}\), we characterize the available learner by an approximation-error budget \(a_q\) and a
stochastic-error budget \(s_q\), with the latter controlled through localized Rademacher complexity. Writing \(\mathcal E_n\) for the minimax mean-squared error, we show that \[\mathcal E_n\asymp1\wedge\left\{\frac1n+\left(a_\mu a_\pi+\min\left\{a_\pi s_\mu+s_\pi^2,\,a_\mu s_\pi+s_\mu^2\right\}\right)^2\right\}.\] The main new ingredient is a novel lower bound for the general two-learner problem. Our proof constructs four finite-mixture testing experiments using orthogonal code functions. Across these experiments, the hidden perturbations are placed outside both learner classes, outside only the treatment learner class, outside only the outcome learner class, or inside both learner classes. These four configurations capture, respectively, the interaction between the two approximation errors, the two asymmetric interactions between one learner's approximation error and the other learner's learning error, and the joint estimation difficulty of learning both nuisances. Combining the four resulting lower bounds yields the displayed rate, which matches the latest upper bound in Gu (2026). Our result shows that standard double machine learning can overstate the intrinsic difficulty of target estimation and provides a target-specific principle for learner selection: approximation error and
stochastic complexity must be jointly balanced across the two nuisance learners rather than optimized separately.
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Machine Learning
HyCO: A Hybrid Neural Solver for Combinatorial Optimization
Yuheng Li, Di Yang, Haipeng Chen et al. (+1 more)
Sequential reinforcement learning (RL) solvers and global
diffusion model (DM) solvers for neural combinatorial optimization exhibit complementary failure modes under an optimization-regret view. The former enjoys small marginal regret in the early construction stage, but suffers from horizon-wise compounding errors with super-linear regret growth; the latter avoids horizon compounding but incurs linear or sublinear regret w.r.t. the dimension of the remaining unsolved subspace. We propose Hybrid Neural Solver for Combinatorial Optimization (HyCO), a hybrid inference
algorithm that constructs a solution prefix with an RL solver and adaptively switches to a conditional DM to complete the remaining decisions. To characterize why such hybridization helps, when to trigger the handover, and how to realize it in practice, we first develop a unified error-scaling theoretical framework and prove that, under explicit error-scaling assumptions, i) the hybrid structure achieves strictly lower expected regret than either backbone alone, and ii) there exists a unique optimal trigger step that minimizes the hybrid regret. We then design a lightweight adaptive trigger that combines policy
entropy and RL-DM disagreement to detect trajectory-level signals of the regime shift as a practical proxy, since the optimal trigger step is defined at the expected-regret level and is not directly computable on individual trajectories. Experimental results on diverse
benchmarks demonstrate that HyCO achieves consistent improvements over both backbones and support the empirical effectiveness of adaptive triggering.
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All authors Yuheng Li, Di Yang, Haipeng Chen, Yanhai Xiong
Machine Learning
Automated Chest CT Protocol Selection via Large Language Model Derived Text Embeddings from Imaging Request Text
Zahra Hosseini, Mahan Pouromidi, Farzad Khalvati et al. (+1 more)
Purpose: Accurate CT protocol selection is critical for diagnostic quality and patient safety, yet the current process is manual, time-consuming, and prone to inconsistencies. Prior Machine Learning methods using keywords or bag-of-words lack contextual understanding and perform poorly on rare protocols. We propose a decision support system using large
language model (LLM) features to recommend protocols from free-text clinical indications, capturing clinical nuance and phrasing variation for more consistent, efficient selection. Methods: In this REB-approved retrospective study, 285,123 chest CT imaging requests from a large academic medical center (2017-2024) were split into training (228,099, 80%) and held-out test (57,024, 20%) sets. Each request included procedure names, clinical indication, HIS comments, and the selected protocol. Clinical text was embedded using a fine-tuned LLM, Meta's LLaMA-3.1-70B; these features input a logistic regression classifier predicting 18 protocol labels (e.g., PE, LDCT). Results: The pipeline achieved a weighted precision of 0.84, weighted F1-score of 0.81, and overall accuracy of 79% across 18 CT protocols. On 300 independent cases with expert consensus, the LLM reached an overall accuracy of 80% versus 83% for radiologists, with no significant difference (p = 0.263). Performance was comparable across most classes, with the LLM exceeding radiologists for some challenging categories, and
entropy analyses indicated more balanced protocol use, suggesting reduced variability. Conclusion: An LLM-based recommendation system can leverage general knowledge from a large natural-text corpus to accurately assign chest CT protocols from free-text imaging requests, and may serve as a viable foundation for protocol recommendation tools where inputs require
language understanding.
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All authors Zahra Hosseini, Mahan Pouromidi, Farzad Khalvati, Patrik Rogalla
Machine Learning
Solving the Elastic Wave Equation with Physics-Informed Neural Networks: A Robust and Critical Assessment
Davide Staub and Ben Moseley
Physics-Informed Neural Networks (PINNs) have recently emerged as a promising approach for solving Partial Differential Equations (PDEs), offering a meshfree alternative that integrates physical principles into the learning process. This presents a new paradigm compared to traditional discretization methods and purely data-driven machine learning techniques. While promising, PINNs are not a panacea; they inherit challenges such as spectral bias and unstable convergence. Moreover, their potential in seismology remains largely unexplored. In this work, we provide a robust and critical assessment of PINNs for solving the elastic wave equation in seismology. We investigate the performance of PINNs on problems with varying degrees of complexity across various seismic sources and parameter models, from constant to highly heterogeneous settings. A pivotal aspect of our work involves investigating whether
embedding physical principles directly into the network architecture enhances convergence and accuracy. We test an extensive range of neural architecture designs, from unrestricted, uninformed PINNs to highly specialized ones. We find that integrating an understanding of wave physics into the network design significantly improves accuracy. For instance, introducing a custom wavelet or plane wave layer, coupled with encoder and decoder layers, consistently yields a relative $L_2$ error approximately half that of the standard PINN, as evidenced across numerous experiments. We further demonstrate that this novel architecture enhances accuracy when applied to the acoustic wave equation, underlying the versatility of our network. Another key contribution of our research is the successful conditioning of PINNs on seismic source locations. This signifies a considerable advancement towards rapid seismic hazard detection and seismic analysis.
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Machine Learning
Semi-Supervised Learning under Spatially Biased Sampling
Bright Wiredu Nuakoh, Francky Fouedjio, Stephen Bradshaw et al. (+4 more)
Standard semi-supervised learning (SSL) typically relies on labelled and unlabelled data sharing a common marginal distribution. This assumption is often violated by biased spatial sampling mechanism, when labels are collected under spatially biased or preferential site selection. We treat this marginal mismatch, spatial autocorrelation, and spatial non-stationarity as three distinct mechanisms, varied independently via a labelled-sampling concentration parameter, a spatial length scale, and a non-stationarity strength parameter, and ask how mismatch degrades SSL, whether the cluster and
manifold assumptions survive it, and how the resulting failure can be diagnosed. Using a controlled synthetic framework alongside PovertyMap-WILDS, California housing, socio-economic and US air quality monitoring
datasets, we systematically vary the degree of mismatch while accounting for spatial autocorrelation and non-stationarity. Through a series of analyses including a segmented-regression changepoint, we show that in the synthetic generator, SSL performance does not degrade gradually but instead exhibits a threshold-like breakdown between approximately 0.71 and 0.77 once distribution mismatch becomes sufficiently severe. We further demonstrate that spatial non-stationarity contributes to performance loss independently of marginal mismatch and that models become increasingly overconfident outside the regions where labels are available. To support practical deployment, we evaluate several distribution-divergence measures as indicators of reliability and introduce a kernel-weighted local divergence metric that provides a more stable estimate of spatial mismatch than a naïve localised approach. These findings provide empirical evidence and diagnostic tools for better documenting the risk of incorporating unlabelled spatial data into semi-supervised learning workflows.
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All authors Bright Wiredu Nuakoh, Francky Fouedjio, Stephen Bradshaw, Yaw Kwaafo Awuah-Mensah, Wei Hong Tan, Emet Arya, Ebenezer Afrifa-Yamoah
Machine Learning · Cross-listed from cs.SD
Clean Accuracy Does Not Guarantee Provenance Robustness: A Prospective Codec-Stress Evaluation of Audio Attribution
Gang Shi
Audio provenance attribution - which system produced a synthetic utterance - is reported at near-ceiling accuracy on clean
benchmarks, yet audio reaching an analyst has usually been transcoded. We report a prospectively registered measurement of closed-set attribution after single-stage codec transport, with the analysis region fixed from fidelity metadata before any attribution model was trained. On two corpora, in-support losses reach 53.5 [43.5, 63.6] and 70.3 [63.0, 77.5] Macro-F1 points for WavLM-Base+, and 61.0 [56.8, 65.1] and 49.8 [41.6, 57.9] for W2V2-BERT 2.0, under simultaneous component-level bands. Degradation is strongly condition- and representation-dependent: within one in-support grid WavLM losses run from -0.4 to +53.5 points, and the two encoders differ beyond a prespecified +/-5-point margin at six of twelve conditions. A clean-qualified ECAPA-TDNN and a Proxy-Anchor head degrade comparably, so the effect is not confined to one representation family or a weak linear head. The registered matched-fidelity comparison was not estimable on this grid, and waveform and perceptual measures order the conditions differently: MP3 at 8 kbit/s ranks mid-grid on SI-SDR but last on PESQ-WB while causing the largest loss. For the tested tasks, corpora, representations and codec grid, a clean accuracy figure does not by itself characterise deployment robustness.
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Machine Learning
Heat Field Signatures: From Point Clouds to Smooth Geometry
Yuanqing Wang, Yapeng Tian and Baris Coskunuzer
Bringing multiscale
geometric analysis directly to irregular point clouds remains difficult: quantities such as local dimension, anisotropy, density variation, and
geometric transitions are typically estimated through explicit neighborhood,
manifold, or graph constructions, or left for neural networks to infer from coordinates. We introduce Heat Field Signatures (HFS), which lift a point cloud to a multiscale family of smooth ambient heat fields, providing a direct interface from discrete samples to
geometric analysis. From this field, HFS computes closed-form global and local signatures directly from pairwise distances, capturing heat concentration, intrinsic dimension, anisotropy, and scale transitions. We further introduce the Heat Dimension Spectrum (HDS), a compact summary of multiscale
geometric composition. HFS can be used as a closed-form descriptor, a lightweight learned representation, or a
geometric feature channel for neural point-cloud models. Across synthetic and real-world
benchmarks spanning subcellular, neuronal, tree, and
protein data, HFS outperforms strong point-cloud and multiparameter-persistence baselines while substantially reducing end-to-end cost. On SCOP
protein-fold classification, HFS improves over the strongest deep baseline by nearly $24$ percentage points using coordinates alone, while standalone HFS representations are exactly rotation-invariant by construction. More broadly, HFS turns a classical heat field into a practical interface for multiscale
geometric analysis in modern point-cloud learning.
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Machine Learning · Cross-listed from cs.CG
A Sub-4 Approximation for Fair $k$-Means
Kangke Cheng, Guanlin Mo, Shihong Song et al. (+1 more)
Fairness in clustering has attracted sustained research interest, motivated by the need to ensure equitable representation of protected groups in machine learning applications. We study fair $k$-means clustering in Euclidean space, where the proportion of each protected group in every cluster must lie within specified lower and upper bounds. These constraints make it challenging to determine both cluster centers and point assignments. We propose an approximation
algorithm that combines a linear programming relaxation with
geometric transformations of the input to construct candidate center sets. Given a $\rho$-approximate
algorithm for weighted $k$-means and any $\epsilon>0$, our
algorithm returns a fractional solution whose cost is at most $1+(3-1/\Gamma)\rho+O(\epsilon)$ times the optimal integral fair cost, where $\Gamma\approx6.357$ is an upper bound on the integrality gap of the standard Euclidean $k$-means LP. With a PTAS as the subroutine, the approximation ratio becomes $3.8427+O(\epsilon)$, improving the previous factor of $5+O(\epsilon)$ to below $4$. The solution satisfies all
fairness constraints exactly and can be rounded to an integral assignment with a bounded additive violation of
fairness and no increase in cost. The same approximation guarantee extends to the $k$-sparse Wasserstein barycenter problem.
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All authors Kangke Cheng, Guanlin Mo, Shihong Song, Hu Ding