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Wednesday 14 October · still arriving

Digital Libraries · Cross-listed from cs.IR

Reading the Neighborhood: Text-Attentive Graph Reranking for Automated Subject Indexing

Subject indexing assigns descriptors from a controlled vocabulary to bibliographic records, a task characterized by thousands of labels, few positive examples per label, and a long tail of rarely used descriptors. Existing extreme multi-label classifiers treat the vocabulary as a flat list, ignoring the semantic relations that thesauri encode. We present TAGHN, a heterogeneous graph reranker over a per-document subgraph of retrieved candidates augmented with the thesaurus neighborhood. The relevance of a candidate descriptor is estimated jointly from its similarity with the document and also the degree to which the candidate's thesaurus neighborhood matches the document content. A decomposed scoring head combines interpretable graph-derived features with retrieval signals. On STW, an economic thesaurus of 6,198 descriptors, TAGHN reaches 0.380 macro F1 against 0.346 for a fine-tuned cross-encoder and 0.278 for a fixed-vocabulary XMLC classifier. In terms of micro F1, it outperforms reranking models and stays competitive (-3.0) with the best fixed-vocabulary XMLC model. Qualitative analysis shows the graph resolving errors that per-label scoring cannot, selecting a narrower gold descriptor where an unstructured reranker settles for its broader parent.
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Digital Libraries

General Classification for Digital Knowledge: Algorithm, Identifiers and a First Benchmark

Digital libraries and knowledge graphs need a way to organize very large collections so that related works are close and any work is quick to reach. The classifications libraries inherited for this, such as LCC and DDC, are maintained by editorial staff, are partly closed, and were not built against a stated, measurable objective. We propose the opposite: a general classification that is fitted, under the constraints that make a classification usable on a shelf or in a browse list, to the same quantity that a companion survey and benchmark (Awad, 2026) ranks existing schemes by. The objective is J = D + 0.005 N, where D is the normalized Dasgupta cost of the class tree on a fixed similarity graph (Dasgupta, 2016) and N is an expected navigation cost in bits with a per-level charge. Two constraints are hard: every class is a contiguous run of one fixed shelf order (the optimal-alphabetic-tree constraint of Hu and Tucker, 1971), and new works are filed by splitting leaf classes only, so that every existing class keeps its code, label and parent. On a corpus of 10,000 arXiv papers the fitted prototype has 110 hand-labelled classes and reaches cost 0.1722 in sample (average linkage 0.1518; arXiv's own categories 0.3333; the best existing scheme reached through the same lexical classifier 0.6414, from the survey). Filing 500 library books as new works created 16 classes and changed no existing identifier. Fit, filing and scoring share one embedding: the held-out skill of 0.922 falls to 0.896 when the same fit is scored on the graphs of the two other models, and on books the average falls from 0.806 to 0.731. The scheme has also seen only arXiv, and labels for inserted classes are weak. We state those limits plainly, release the scheme as CC0 open data, and ask whether a learned, open, order-preserving classification can become a general one.
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Tuesday 13 October · still arriving

Digital Libraries

Interpreting Paper-to-Patent Citations in AI-Related PMC Articles

Paper-to-patent citations connect scientific and technological documents, but their interpretability depends on how patents are used in the citing text. This study examines citation contexts and paper-level outcome associations in AI-related articles in PubMed Central (PMC). Screening 189,073 articles identified 746 with explicitly tagged patent references (0.395%), including 713 with 1,544 identifiable in-text patent-citation instances. Three large language models classified these instances by represented content, motivation, textual position, and evaluative stance. Regression models examined associations among these dimensions, and propensity-score-matched regressions compared patent-citing papers with XML-screened controls. Background-oriented citations were predominantly neutral and introductory, whereas adoption-oriented citations were more closely associated with methodological positions and supportive evaluations. These patterns suggest heuristic configurations of contextualization, operationalization, and problematization, although classification overlap and exclusion of rare categories limit their interpretation. In matched samples, the patent-citing indicator was associated with lower scholarly-citation measures and more citations received from patents. These associations are observational, not causal. Together, these findings show that paper-to-patent citations encode heterogeneous forms of engagement with patented technology and should be interpreted as selective bibliographic signals rather than direct indicators of technology-to-science knowledge transfer or research value.
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Digital Libraries

Quantifying research uniqueness with Unbalanced Optimal Transport: Case studies of ten leading universities in neuroscience

Research evaluation has developed around quantity, citation impact and, more recently, the accumulation of research excellence, but these dimensions remain largely dependent on citations, which describe how research is received rather than what it contains. We propose uniqueness as a complementary dimension and measure it with the Research Uniqueness Index (RUI), which asks how far a university's research sits from what is typical in its field, using no citations but the content of the research itself. Each researcher is represented by an embedding of their abstracts, and an unbalanced version of Optimal Transport returns the share of that work which cannot be matched into a random sample of same-field researchers, the standard population; that unmatched share is the score. Because every researcher is scored, a university is a distribution rather than one number, and we treat that distribution as the indicator: it shows whether uniqueness is spread across an institution or concentrated in a few groups. Quantiles summarise it and, being quantiles, do not reward size. Since uniqueness is defined only relative to a field, we demonstrate the index within one, neuroscience (Scopus, 2021-2025; 9,861 reference researchers). All ten universities studied sit well above the standard (RUI_median 0.40-0.53 versus 0.27) and five specialised institutes higher still (0.57-0.73), the most unique work often confined to a narrow niche that the same scores name. RUI is uncorrelated with citation impact, and a controlled test confirms that it tracks displacement from the field rather than topical concentration; results are robust to an alternative embedding and replicate in computer science and economics. The index is not intended as a league table: the gap above the standard and the researcher-level niche structure are stable, whereas the order among adjacent universities is not.
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All authors Yu Ota, Takayuki Ogi, Yo Nakawake, Daichi Mochihashi, Amane Koizumi

Monday 12 October

Digital Libraries · Cross-listed from cs.CY

Governing Copyright Responsibly in the Era of Generative AI

Large language models are trained on collections that may include scholarly works, while authors generally lack work-level information about whether and how their works were used. This paper asks how copyright governance frames and operationalises the protection of such authors, and what a responsible alternative would require. Forty legislative, judicial and soft-law instruments issued between 2019 and 2026 were coded deductively against a framework derived from Responsible Research and Innovation theory, yielding 1,337 category assignments across 835 segments. The European Union and the United States are the primary cases; the United Kingdom, China and international bodies serve as comparators. Normative orientation and the distribution of responsibility dominate the corpus, while reflexivity is the least represented category and reaches its minimum in the US sub-corpus. Both primary jurisdictions frame protection procedurally rather than as an entitlement, and no instrument in the corpus creates a general author-facing attribution duty for the use of works in AI training. From the coded gaps, the paper derives a six-instrument governance design and a capacity-based allocation of responsibility among developers, publishers, collecting societies, funders, institutions, regulators, and individual authors.
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Digital Libraries

How much does the map of science depend on the embedding model?

Science maps describe relationships between papers. Text embedding models build these relationships by turning a paper's text into a list of numbers that gives it a position. Would another model give the same picture? I compare ten models using titles and abstracts of 500,000 publications from the OpenAlex bibliographic catalogue, published in 2000-2024 across 26 disciplines, including Medicine and Physics. Representing each discipline by its papers' average position produces similar arrangements across models, including when other papers are selected. Yet within a discipline and period, two models share, on average, only eight of the 25 papers closest to a given paper. Supplying titles alone also changes much of that list, with effects that vary between models. Models can also disagree about which discipline's papers are more spread out. One measure of spread compares angles between lines drawn from a common point to each paper's position. Moving that point can reverse which discipline appears more spread out, even when selecting other papers leaves the answer unchanged. The broad arrangement can remain similar while answers about nearby papers and differences between disciplines depend on the model, the text it receives and how its output is processed.
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Sunday 11 October

Digital Libraries · Cross-listed from cs.IR

Local Citation Recommendation Without Graph Signals

Resolving correct citations can be a time-consuming task for research writers. We address local citation recommendation (LCR), where the goal is to retrieve appropriate references for a given sentence. Web tools generally depend on the existing citation graph, which may bias results toward citation count or more recent publications. LCR research using full paper texts has been limited by the lack of publicly available data. We present a new dataset, the Local Citation Recommendation Corpus (LCRC), containing 14,735 scientific statements derived from astrophysics review papers, each with one or more citation targets whose full text is accessible via API. Using this dataset we systematically compare retrieval methods and develop a citation recommendation system that avoids citation graph bias while achieving 8.0% improvement in Recall@25 and 6.9% improvement in NDCG@25 over dense retrieval baselines without model fine-tuning. To support reproducibility, we make our code and dataset publicly available.
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All authors Benjamin Basseri, Pavlos Protopapas, Kemeng Zhang, Alberto Accomazzi, Stephanie Jarmak, Anna Kelbert

Digital Libraries · Cross-listed from cs.SD

JSIR: An Audio-Aligned, Multi-Task Dataset of Jazz Standard Recordings

Beat tracking, chord estimation, and structure analysis are staple tasks of music information retrieval. Their datasets are drawn largely from Western popular music, and jazz remains a repertoire on which state-of-the-art systems underperform. We present JSIR, the Jazz Standards dataset for Information Retrieval. Its 267 recordings of 44 jazz standards span 25.6 hours, 3.7 times the audio of JAAH, the closest existing resource. For each recording, we provide annotations for beat and downbeat positions, chords, and sections, all produced by a jazz musician and revised in several passes. In baseline experiments, models trained with JSIR also improve on other jazz datasets: the downbeat F-measure of a state-of-the-art beat tracker rises from 87.7% to 89.2%, and the seventh-chord accuracy of a pop-trained chord estimator on JAAH from 34% to 41%. We publicly release the annotations, the annotation tool used to create them, and a web application that displays them in sync with the audio.
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Digital Libraries · Cross-listed from cs.SD

Gugak-VocalSet: A Multi-Genre Studio-Quality Dataset of Korean Traditional Singing with Sigimsae Annotations

We present Gugak-VocalSet, the first publicly available audio dataset for Korean traditional singing with dense annotations of sigimsae, a structured pitch contour system of vocal expressions. Gugak-VocalSet contains 24.5 hours of unaccompanied solo vocal recordings across 305 tracks of representative repertoire curated by the National Gugak Center, performed by 20 professional singers in a controlled studio environment with fixed key and tempo. In addition to genre, lyrics, and mood/timbre tags, the dataset provides a unified sigimsae ontology and approximately 68,000 segments (71,700 instances including multi-label) of audio-grounded sigimsae annotations; the ontology adopts a functional-position-based hierarchy designed for consistent application across genres, and 14 expert annotators specializing in Korean traditional music performed segment-level labeling accordingly. Baseline experiments on sigimsae classification and event detection show that domain-informed F0 representations remain competitive with, and on classification surpass, frozen probing of a general-purpose music foundation model, while pitch and spectral cues play complementary roles in event-level detection. Companion page: https://www.danbinaerin.com/Gugak-VocalSet/
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All authors Danbinaerin Han, Wonil Kim, Seah Hong, Dongjoo Moon, Jaeok Lee, Jongpil Lee, Chaewon Kim, Juhan Nam

Saturday 10 October

Digital Libraries

A Stateful Research Information Infrastructure for Scientific Discovery

Artificial intelligence (AI) is being applied to an expanding range of scientific activities, including literature analysis, hypothesis generation, software development and automated experimentation. Yet these capabilities rely on a more fundamental condition: scientific information must remain identifiable and traceable across systems and over time. In practice, different versions of a work and their associated records and files are often scattered across services and local directories. This fragmentation forces researchers to identify and contextualize the same work repeatedly, disrupting continuity from discovery to interpretation and reuse. Here we present Gewu Insight, a research information infrastructure that addresses this discontinuity by organizing scientific works as persistent, stateful research objects. It unifies venue-, topic- and author-based discovery records through a shared paper identity. Within a local library, metadata, versioned resources and research context can then accumulate around the same work. These capabilities are integrated into an iterative workflow for scientist-led, AI-assisted research, allowing earlier interpretations to be revisited and refined. A bounded evaluation showed high candidate precision across the three discovery modes, with paper identity, resource distinctions and research state preserved in controlled workflows. By making continuity an explicit property of research infrastructure, Gewu Insight can serve as an inspectable scientific memory layer shared by researchers and AI assistants, supporting human judgment and providing a foundation for future, more epistemically grounded scientific AI.
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Friday 9 October

Digital Libraries

Do you "see" what I "see"? A Multi-panel Visual Question Answer Dataset for Large Language Model Chart Analysis

Digital libraries increasingly host scientific publications whose figures encode primary research findings, yet making this visual content searchable, accessible, and reusable remains an open challenge. Large language and multimodal models (LLMs/LMMs) provide the possibility to automate many figure parsing tasks such as determining data trends or extracting data from plots. In this work, we consider if these models can reliably support task-oriented visual data analysis when presented with synthetic, but realistic, scientific figures that contain multiple charts. Our Visual Question Answering (VQA) process scaffolds our tasks along a four-level description model from basic conceptual answers to interpretive and analytical understanding. Additionally, we outline our process for synthetically generating our single and multi-panel (charts in which there are multiple panels present) plots and testing the data with various LMMs using quantitative analysis. In general, we find LMMs become less accurate with increasing figure complexity as the number of panels, number of plot elements, and difficulty of questions increase. Finally, because LMM accuracy is expected to change rapidly, our analysis also considers cost relative to performance as a metric to inform future user decisions. We provide the detailed question-answer pairs used in this analysis, along with the code used to generate random plots, question-answer pairs and detailed bounding-box metadata for chart elements. The code and data are available at https://github.com/ReadingTimeMachine/LLM_VQA_MultiPanel and https://huggingface.co/datasets/ReadingTimeMachine/visual\_qa\_multipanel
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All authors Daniel J. Evans, J. P. Naiman, JooYoung Seo, J. Stephen Downie

Digital Libraries

OC-AND: A Citation-Enriched Benchmark for Author Name Disambiguation

Author Name Disambiguation benchmarks are predominantly derived from closed infrastructures that may not reflect conditions in open bibliographic environments. We present OC-AND, an open citation-enriched benchmark for AND constructed by remapping the WhoIsWho dataset with bibliographic and citation metadata from OpenCitations. The dataset is produced through a reproducible five-stage pipeline involving DOI verification, metadata validation, OpenCitations enrichment, and author-centric transformation. OC-AND retains the WhoIsWho ground-truth files and partition structure unchanged, while its publication files are restricted to publications that could be matched to a validated DOI and an OpenCitations record. It introduces realistic characteristics of open environments: heterogeneous metadata completeness, absent abstracts and affiliations, asymmetric citation coverage, and sparse graph connectivity. The dataset contains author records with associated citations, enabling evaluation of AND methods in settings closer to real-world open scholarly infrastructure scenarios. OC-AND is released as open data with complete provenance documentation and pipeline code, supporting reproducible research and the development of citation-aware disambiguation approaches.
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Digital Libraries

A precision-driven evaluation protocol for author name disambiguation

Author Name Disambiguation systems are commonly evaluated using pairwise and B$^3$ metrics, which summarize clustering quality through aggregate precision and recall but do not explicitly distinguish between lumping (merging publications from different authors) and splitting (fragmenting the publications of a single author). Because these errors can have asymmetric consequences in bibliographic applications, we propose a precision-driven evaluation framework that decomposes clustering quality into complementary instance-level and cluster-level signals. The framework introduces cluster-level Lumping Error and Splitting Error to separately quantify contamination and fragmentation, combines them with standard pairwise and B$^3$ metrics through a Composite Score, and uses the resulting measures for model selection. We characterize the diagnostic behavior of the framework through a controlled synthetic case study and assess the sensitivity of the Composite Score to its weighting scheme. The results show that the proposed structural measures distinguish error patterns that aggregate metrics can mask, while the sensitivity analysis identifies a stable region for the adopted weighting configuration. The framework is released as an open-source Python pipeline.
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Thursday 8 October

Digital Libraries

Life after delisting: tracking the publication output and citation impact of Scopus-discontinued journals with OpenAlex

Selective databases such as Scopus periodically re-evaluate the titles they index and remove those that no longer meet their quality criteria. Once a journal is removed, its subsequent output is no longer recorded, and the consequences of this process have therefore received little attention. This study analyzes the publication output and citation impact of 514 sources delisted from Scopus between 2018 and 2024, based on 678,162 documents retrieved from OpenAlex over a window of three years before and after delisting. Differences between periods are tested with the Wilcoxon signed-rank test for paired samples, globally and by geographic region, field of knowledge and SJR quartile. Output grows until the year of delisting and falls sharply afterwards. The median annual output per journal drops from 35 to 22 documents (-37.1%; p < 0.001; r = 0.30), 61.7% of journals publish less, and 84 (16.3%) have no documents recorded in OpenAlex after delisting. Citations per document, measured over a three-year window, barely change when each journal is compared with itself (-2.4%; p = 0.079), and journals are almost evenly split between those whose impact falls and those whose impact holds steady or rises. The results indicate that delisting makes these journals less attractive as publication venues but does not penalize the citation of the work they publish to the same extent, which raises concerns from a research integrity perspective.
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Digital Libraries · Cross-listed from cs.CL

Large Language Model Turnover Undermines Screening for Artificial Intelligence-Assisted Scientific Writing

Journals and conferences have begun to screen submitted manuscripts for text written using large language models (LLMs). The reliability of this screening rests on benchmark evaluations against a fixed set of LLM versions, while the versions in actual use keep changing. Here we quantify how this LLM turnover affects the screening of scientific manuscripts. We paired 4,000 pre-ChatGPT abstracts from the Proceedings of the National Academy of Sciences with their rewrites by 23 LLM versions from three vendors, released between June 2023 and August 2026. We then trained detectors under maintenance scenarios ranging from a detector retrained on every new version to one trained once and never updated. Detectors trained only on a vendor's past versions can collapse at the boundaries between model generations: calibrated to falsely flag 1% of human-written abstracts, they catch above 99% of rewrites just before the sharpest boundary and 3.8% just after it. Detectors trained on later versions can also miss rewrites of earlier ones. Vocabulary differences between versions largely track where detection transfers and where it fails. In the two screening scenarios we simulated, screens covering all 23 versions either flagged one in eight human-written abstracts or missed one in three rewrites of the newest version. Indeed, a commercial detector missed most rewrites of the version just after the sharpest boundary while flagging almost no human-written abstracts. Research-integrity policy should therefore treat the benchmark accuracy of a detector as provisional, to be re-verified with every LLM release, including earlier versions.
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Digital Libraries · Cross-listed from cs.CL

SAIL: Scientific Agentic Intelligence via a Science-Aware Loop

We introduce SAIL, an open model with 35B total and 3B active parameters for literature research, scientific coding, and multi-step research workflows. SAIL is developed through a science-aware improvement loop: agents built on frontier AI models analyze its task failures and construct training tasks that address the underlying capability gaps. The diagnosis examines search and evidence selection in literature tasks, scientific assumptions and reasoning in coding, and planning and revision in longer investigations. The agents draw on paper collections and scientific code repositories to build problems, interaction trajectories, and executable tasks with the required environments and tools. We repeat this loop over multiple development cycles and train SAIL through supervised fine-tuning, specialist training, multi-teacher on-policy distillation, and agentic reinforcement learning. SAIL achieves competitive performance across scientific research tasks with substantially fewer parameters than leading open-weight models.
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All authors SAIL Model Team: Boyuan Sun, Bryan Dai, Che Liu, Chi Liu, Derek Li, Hongming Piao, Mengzhuo Chen, Xidong Wang, Yan Shu, Yinda Chen, Ziyang Zeng

Tuesday 6 October

Digital Libraries · Cross-listed from cs.CL

Wieszcz-XIX: A 3.1-Billion-Word Corpus of Pre-1918 Polish and Temporally Bounded Language Models Trained From Scratch

Historical Polish is well documented as a language but annotated in machine-readable form only to about a million words for the period this paper covers; the rest sits behind optical character recognition of variable quality. We present Wieszcz-XIX, a corpus of 6.75 billion tokens (about 3.1 billion words) in 294,369 documents, most of them periodical issues, of Polish published from 1800 to 1918, assembled from Wolne Lektury and the Internet Archive by a pipeline that filters, deduplicates, audits for post-1918 leakage and splits at the document level. It is over three orders of magnitude larger than the annotated corpus of the same period, and we quantify its defects: recognition corruption against a false-positive floor, near-identical duplication, which is removed, and post-1918 leakage, which is excluded from the training corpus itself down to a known residue of 0.04 to 0.38% of its bytes, found in the transcribed source, so the published corpus is the trained one document for document. On a hand-corrected sample the character error rate is 0.68% where the text is legible, and 45% of the sampled passages cannot be corrected. On it we train a ladder of decoder-only models from 47M to 349M parameters from scratch, and measure their temporal boundedness. Against two modern Polish base models, one far larger, the 349M shows a crossover, as does the 107M against the comparator of its size: post-1918 vocabulary costs them about 3.1 bits per byte more than period vocabulary, a gap the comparators do not show, and period vocabulary costs them fewer bits than it costs the comparators. Shown period text, the models keep its spelling and the comparators only partly. Adding parameters gains about twice as much as a second pass over the data. We release the corpus, code and weights. Content warning: the models reproduce period prejudice, including antisemitic statements.
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Digital Libraries

The Challenges of PROTAC Permeability Prediction

Cell permeability is a key bottleneck for PROTAC development, and public data available to model it is scarce and inconsistent. We adapt an expert-in-the-loop LLM extraction workflow to mine PAMPA measurements from the primary literature, recovering image-only structures by optical chemical structure recognition and hand-verifying every record, expanding the public record from 31 PROTACs to 87. Ridge models trained on PROTAC-DB 3.0 reach $R^2 = 0.67$ within that resource but collapse on the newly extracted chemistry ($\rho = 0.12$), while models trained on the new compounds transfer back successfully ($\rho = 0.80$). We conclude that the current composition of the published records, and not dataset size, is limiting the construction of more generalizable models, and we outline what would need to change in reporting practices for better data-driven permeability models.
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Monday 5 October

Digital Libraries

Citations Are Late: Reading epistemic instability from what papers believe, years before the citation graph catches up

Paradigm shifts in science are visible in what researchers assert and contest before they are visible in the citation graph. We ask whether a cheap, content-level signal of epistemic instability, derived from the changing distribution of stated modelling beliefs in paper abstracts, can anticipate a paradigm shift earlier than the dominant citation-based disruption index (CD5). On the displacement of recurrent networks by Transformers in NLP, a pre-registered content signal crosses its detection threshold in 2016-Q1, whereas a real-time CD5 monitor cannot even observe the 2017 breakthrough until 2022-Q2, since CD5 needs a five-year forward-citation window: a lead of about 25 quarters. The flat citation baseline is not an artifact of one index, as our CD5, a reference-normalised variant, and an authoritative precomputed index all sit near zero across the shift. The lead is also not a faster proxy: at equal latency the signal beats the content competitors tested, including a learned CD-from-text model and an embedding disruption measure, and the decomposition sees what a keyword cannot (keyword-blind AUC of about 0.9, reproduced on human labels). The lead over CD5 is an observability lead. Which signal carries it depends on the shift: belief adoption in NLP, contestation and applicability stress in vision. Measured against the breakthroughs themselves, the signal leads by five quarters in NLP and is contemporaneous in computer vision.
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Digital Libraries

Large scientific teams are more, not less, disruptive

Modern science has moved decisively toward larger and more collaborative research teams. Yet an influential 2019 study reported that small teams are more disruptive than large teams, a conclusion difficult to reconcile with both the well-known trend toward increasing collaboration and the disproportionately large teams behind widely recognized disruptive research, such as work that has been awarded Nobel Prizes. Here we show that the reported disruptive advantage of small teams is largely an artifact of measurement rather than a fact about teams. Analyzing about 60 million scientific publications, we find that larger teams cite more references and that the standard disruption index declines mechanically as reference lists lengthen. Equalizing reference-count distributions across team sizes reverses the negative gradient within the index's own framework. Evaluating each paper against one reference at a time yields a reference-robust measure that distinguishes recognized breakthroughs from ordinary papers more sharply and more consistently than the standard disruption index across six independently curated benchmarks, including the Nobel Prize. Under this validated measurement, scientific disruption increases with team size across four scientific domains and in every decade from the 1970s to the 2010s. For scientific publications, we conclude that larger teams are more, not less, disruptive.
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Digital Libraries · Cross-listed from cs.CL

CroissantMiner: Automated Extraction and Validation of Croissant Metadata for ML Datasets

Croissant has emerged as a standard for machine-readable dataset metadata, yet populating its fields remains labor-intensive and requires careful reading of accompanying dataset documentation. We present the first benchmark enabling end-to-end evaluation of metadata extraction aligned with a community-standard schema. The benchmark comprises 602 papers, including 102 with human-validated gold annotations and 500 with LLM-generated silver annotations, covering the full Croissant schema with both core and Responsible AI (RAI) fields. Using this benchmark, we evaluate a range of extraction systems spanning frontier models, open-weight models, and agentic architectures, under a two-tier evaluation framework that combines rule-based scoring with an LLM judge selected via human audit. We find that single-pass extraction consistently outperforms the four agentic architectures we evaluate: across backbones, these decomposed variants achieve lower accuracy than a single full-context pass. The largest gap appears on long-form RAI fields, which require synthesizing and interpreting information scattered across a paper rather than copying it from a single location, a setting where current systems remain far from reliable. We release the benchmark, evaluation code, judge audit, a live demo, and a leaderboard open to new systems.
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All authors Berke Arda, Ahmetcan Yavuz, Paul Gerry, Sebastian Lobentanzer, Nobin Sarwar, Joan Giner-Miguelez, Kongtao Chen, Luyao Zhang, Mrinmaya Sachan, Mubashara Akhtar

Digital Libraries · Cross-listed from cs.CL

Agentic schema-guided extraction of materials process knowledge from scientific literature

Materials literature contains detailed experimental knowledge, but procedures, chemical entities and measurements remain difficult to aggregate because they are reported in heterogeneous forms and depend on process-specific context. We present SciKGExtract, a schema-guided framework that combines large-language-model extraction with chemical normalization and agent-based evaluation and refinement before knowledge-graph integration. We evaluate the framework on 176 atomic-layer-deposition papers describing zinc oxide (ZnO) and indium–gallium–zinc oxide (IGZO), together with an expert-annotated full-schema subset. PubChem normalization improves exact-match extraction F1 for every tested model. For ZnO, the best F1 increases from 0.591 for direct normalized extraction to 0.805 with agentic refinement, whereas the best IGZO result is 0.344, revealing the greater difficulty of multicomponent supercycle processes. Evaluation against a deeply nested schema containing 65 experimental properties and 155 quantitative measurement nodes further exposes errors in process segmentation and numerical assignment. These results show that chemical canonicalization and targeted agentic verification provide complementary controls for converting complex materials literature into reusable, machine-actionable experimental knowledge.
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Digital Libraries

Errors of LLM-Assisted Literature Retrieval in Environmental Science: A Comparison Study of Abstract versus Full-text Based Prompts

Large language models (LLMs) are increasingly used for literature search and synthesis. However, it is unclear whether they retrieve accurate bibliographic information in environmental science. Therefore, we quantitatively compared the errors of widely used LLM platforms in retrieving references related to original articles from five leading environmental science journals (Energy and Environmental Science, Nature Sustainability, Nature Climate Change, Lancet Planetary Health, and Environmental Science and Technology) published in 2024 to 2025. Claude, ChatGPT, Grok, DeepSeek, Perplexity, and Gemini were used as the LLM platforms. LLMs retrieved 10 references for each of the 50 randomly selected original article using either the article's abstract or its full-text as prompt. The retrieved references were subject to a multimetric score ratio combining validity of bibliographic data, Google Scholar link, digital object identifier, Scopus Electronic Identifier and relevance score (cited by or being the index paper), and the proportion of complete fabrication that failed all metrics. Abstract-only prompt yielded significantly higher accuracy than full-text one. This advantage was confirmed in multilevel mixed-effect multivariable regression after adjusting for journal, platform, and output order. Source journal and the position of a reference within the output list were also independently associated with retrieval accuracy, with lower-listed references associated with lower accuracy. These findings suggest that LLM assisted literature retrieval in environmental science remains moderately accurate and overall inconsistent, varying significantly by platform, journal, prompt type, and output position. Abstract-based prompting, as task-aligned information compression, may outperform full-text one in literature retrieval. Caution should be used when generalizing our findings.
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Sunday 4 October

Digital Libraries · Cross-listed from cs.AI

More Claims, Less Evidence: Bounded Verification of AI-Generated Digital Knowledge Artifacts

Digital libraries, repositories, and AI-mediated knowledge services increasingly rely on generative systems to produce summaries, descriptions, and other multi-claim knowledge objects. Yet generation can scale far more easily than verification capacity: a reviewer may need to decide whether an object is suitable for publication or downstream use after checking only a small fraction of its claims. This creates a fundamental gap between claim-level verification and confidence in the object as a whole. The central question is therefore what a successful partial check implies about the reliability of the complete artifact when its size grows but the verification budget does not. This paper contributes a Bayesian model of bounded verification centered on the Predictive Value of Pass (PVP). The model predicts that evidentiary value decreases as artifacts grow under fixed verification capacity, improves with larger verification budgets, and is especially fragile when errors are sparse. Controlled experiments on FEVEROUS and FEVER support these predictions and show that adding supported claims around a fixed number of false or unsupported claims can make passing more likely while making a pass less informative. The model further yields the minimum verification budget required to maintain a target PVP, providing a practical component for AI-assisted quality-assurance workflows in which generated knowledge objects must be checked before publication or downstream use.
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Digital Libraries

The machine use of human beings

Research results are prioritised by search engines, large language models and knowledge graphs chiefly through restatement rather than through the originating source. Although the open-access share of annual scholarly output has recently exceeded half, a substantial subscription corpus remains outside what machine readers may legitimately access under prevailing licences. A mechanism is described whereby subscription content is drawn into the open corpus through its citation and restatement in open-access articles—a process termed human mining, by analogy with the text and data mining performed by machines. An optimistic upper bound on what may thereby be inferred by a machine reader confined to the open literature is modelled, and the completeness, latency and licence constraints of that bound are quantified. A majority of subscription articles that have ever been cited is found to be reachable through at least one open citation, and the median interval between a subscription article's publication and its first open citation is shown to have fallen from thirteen years for work of 1990 to one year for work of 2020. The advantage once conferred by direct subscription access to machine readers has thereby been largely eroded, chiefly as a consequence of the growth of open publishing rather than any change in how researchers cite.
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Digital Libraries · Cross-listed from cs.CL

Towards cross-cultural study of folksong lyrics with machine translation

Music is universally present in human societies. Ethnomusicologists have long been documenting the diverse expressions of human musicality, and comparative musicology has recently brought several studies of folksong to a more global scale. Such cross-cultural research has not been conducted on lyrics: the language barrier has so far prevented work with multi-lingual data. However, Natural Language Processing (NLP) technologies have reached a stage where this language barrier may no longer be prohibitive. Combining folksong lyrics corpora across five languages, we machine-translate them to a pivot language with a pre-trained neural topic model, and we examine the relationship between content and social function within each language, and across languages for wedding songs. As expected, human evaluation of translation results shows that non-Indo-European languages suffer from overall worse translation quality. Experiments with topic models then indicate that the content of lyrics is at best partially related to the social function of folksongs across all languages. These experiments are just first steps into cross-cultural folk musics lyrics analysis; however, they do indicate that a previously unobserved web of cross-cultural relationships beyond ethnomusicological typologies may be uncovered through the study of what people sing across the world's diverse folk musics.
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All authors Anna Dvořáková, Anna Aljanaki, Danbinaerin Han, Peter van Kranenburg, Matěj Kratochvíl, Inna Lisniak, Zdeněk Vejvoda, Jan Hajič jr

Friday 2 October

Digital Libraries

Still funded, no longer counted: how NIH's 2025 award reviews changed what the government counts as minority health research

Funders know their portfolios through software that classifies award text. The US National Institutes of Health (NIH) reports its spending in more than 300 categories mined this way, and work on classification and indicators treats the text as the applicant's to write. In 2025 NIH required "DEI language" removed from awards not supporting DEI activities, and so policed the words it also counts. We followed population names through 37,790 continuing awards, checking them against practice records. Names were informative: in new awards with trial baselines, a title naming Black populations predicted a 60-percentage-point higher enrolled share. Text features predicted which names survived, and practice records added little. NIH's minority health category followed the names: of continuing projects carrying it, 99.4% with unchanged summaries kept it, against 15.7% of those whose summaries no longer named a racial or ethnic population, while the projects kept their funding. Blinded reviewers judged 42 of a random 50 such losses to have met its definition in FY2024. Comparing both summaries of 70 name losses, they found aims concerning the population recast in 49. Read alone, 63 FY2025 summaries no longer met the definition. Awards naming sexual and gender minorities were recorded as terminated 37.8 points more often after adjustment for listed terms, institute and activity. We call the mechanism word targeting, its boundary population targeting, and its product uncounted science: funded research the count no longer records. The count followed the edited text, and the edited record cannot say whether the research changed with it.
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Digital Libraries · Cross-listed from cs.HC

Asterism: Exploring and Synthesizing Scattered Observations into Literature-Grounded Hypotheses and Theories

A theory draws many independent observations into one framework with novel hypotheses. A researcher building such a theory must synthesize observations scattered across many papers, each describing related concepts but often in different terms. Which concepts matter most also depends on their preferences and research questions. Recent approaches scale theory synthesis with LLMs, but automate away choices and intuitions from researchers. We present Asterism, which extracts observations from hundreds of papers as concept-relation triples, with concepts unified in a hierarchical ontology. Researchers curate an evidence graph using the ontology and aggregate observations at different levels of granularity to focus theory formation on specific phenomena of interest. In a field deployment (n=10), researchers worked from observations to theories, and kept concepts and hypotheses fitting their preferences. In two case studies, teams of immunology and agriculture researchers discovered mechanisms outside their standard analyses and constructed hypotheses worth follow-up experiments.
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All authors Joseph Chee Chang, Michael D'Arcy, Amy X. Zhang, Pao Siangliulue, Sangho Suh, Aakanksha Naik, Jena D. Hwang, Javier Ramos Benitez, Stella Wroblewski, Matt Latzke, Michael Cuoco, Ruben Lozano-Aguilera, Kris Ganjam, Joel Chan, Doug Downey, Peter Jansen, Kyle J. Travaglini, Daniel S. Weld

Wednesday 30 September

Digital Libraries

Foreign-trained faculty and the collaborative organization of high-impact U.S. science

Internationally mobile scientists are central to national research and innovation systems. We link faculty rosters from the Academic Analytics Research Center to OpenAlex publication records for 2011-2020, yielding more than 12 million faculty-publication observations for 236,394 tenure-system faculty at more than 300 major U.S. universities. Foreign-trained faculty, defined by a terminal degree awarded outside the United States, constitute about 11% of the observed faculty workforce but account for 13-14% of publications and 14-16% of top-1% cited elite output. We find that this elevated representation in elite output is closely related to their organizational embeddedness: when faculty are compared within the same institution, scientific domain, rank, and year, the difference in elite output narrow substantially while overall productivity and collaboration differences persist within those settings. In addition, foreign-trained faculty enter each publication year with larger and broader prior collaboration networks, and collaborator reach is more strongly associated with subsequent elite output. By contrast, although raw topic breadth is greater among foreign-trained faculty, after accounting for prior publication volume, we find that their topic breadth is slightly narrower and more cognitively concentrated. These findings recast international training in the lens of scientific capacity and organizational integration in that internationally accumulated scientific capabilities become embedded in institutions and relationships through which research is organized and produced.
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All authors Erjia Yan, Chaoqun Ni, Xiang Zheng, Weiye Gu

Digital Libraries

Best practices in software citation

Software is both a foundational tool and a primary output of modern computational research, yet citation practices for software remain inconsistent, incomplete, and rarely machine-actionable. Existing infrastructure designed for paper and data citation does not adequately serve the distinct needs of software citation, leaving a gap that impedes reproducibility, misattributes scholarly credit, and obscures the labor embedded in research pipelines. Drawing on a NASA-funded community workshop held in April 2026, we present an analysis of four interconnected themes: (I)~the cultural barriers to consistent citation practice; (II)~the need for clearer community norms and conventions; (III)~gaps in existing technical infrastructure and workflow; and (IV)~the emerging challenges posed by AI-assisted research. For each theme we identify targeted interventions and assign responsibility across stakeholder groups. We conclude that meaningful progress requires simultaneous action on technical and cultural fronts. Journal editors and publishers represent the single highest-leverage point for accelerating this change, and correct citation must become the path of least resistance within researchers' existing workflows.
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All authors Phil R. Van-Lane, Floor S. Broekgaarden, Daniel S. Katz, Bhavesh Patel, Pengyin Shan, Jonathan Starr, Samantha Teplitzky, Peter K.G. Williams, Alice Allen, Lucas M. de Sá, Andrew Fullard, Sandra Gesing, Tom Wagg, Andrea Zonca