$PROT protein

Latest papers

1. Reachability-Based Formal Verification of Graph Neural Networks with Node and Edge Features cs.LG · 24 Sep · 1 hit

   …IEEE-39, and IEEE-118 test cases, as well as two standard graph classification benchmarks, ENZYMES and PROTEINS. Our results show that GNNV provides tighter robustness guarantees than CORA on graph classification…

2. TopU-LBVS: A Realistic Multi Target Benchmark for Ligand Based Virtual Screening cs.LG · 24 Sep · 2 hits

   …hard-negative screening conditions. Starting from curated ChEMBL~35 bioactivity data, TopU-LBVS covers 93 protein targets across 7 protein classes and constructs target-specific screening libraries with…

3. ProteoEM: probabilistic protein abundance estimation from iterative affinity traces q-bio.QM · 24 Sep · 2 hits

   Single-molecule affinity mapping enables molecular-level measurement of proteins and proteoforms, but imperfect and nonspecific probe binding makes individual affinity traces…

4. PFArena: Benchmarking Language Models for Protein Modification cs.AI · 24 Sep · 7 hits

   Protein modification requires navigating an immense sequence space, yet wet-lab validation remains…

5. Position-dependent friction in protein folding from a GLE derived with a non-stationary localized projection distribution cond-mat.soft · 23 Sep · 2 hits

   …from short simulations that do not sample the entire phase space. Applying this non-stationary GLE to protein folding trajectories, we find for villin and an $\alpha$-helical poly-alanine segment that the total…

6. Spatially Resolved Nucleated Polymerization: A Free-Boundary Model of Protein Aggregation in Concentrated Solutions physics.bio-ph · 23 Sep · 2 hits

   Kinetic models of protein aggregation describe populations by size, not by spatial organization or morphology. We extend…

7. An interdimensional funnel enhances topologically protected oscillations in high-dimensional stochastic systems cond-mat.soft · 22 Sep · 1 hit

   Biochemical systems such as protein complexes often occupy configuration spaces whose dimensionality grows with the number of molecular…

8. Empirical Bayes prepivoting under group invariance: false discovery rate control and moderated t-tests stat.ME · 22 Sep · 1 hit

   We consider simultaneously testing hypotheses about thousands of units, e.g., genes or proteins, where each unit yields a handful of replicate measurements and we test whether its mean is zero. A…