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Tuesday 22 September

Machine Learning

Graph Domain Adaptation Does Not End with Representation Learning

Graph domain adaptation (GDA) transfers knowledge from a labeled source graph to an unlabeled target graph under shifts in both node attributes and graph structure. Existing methods primarily adapt graph representations through propagation redesign, distribution alignment, or source-to-target transition modeling, but still rely on a single graph-propagating path for target prediction. This leaves open whether an adapted graph representation exhausts the predictive evidence available in the target domain, since the graph-aware expert and graph-free local expert may exhibit different failure modes under topological shifts. To address this limitation, we propose EviGDA, an Evidence-Augmented Graph Domain Adaptation framework that complements graph representation adaptation with a graph-free local expert. The graph-aware expert performs message passing and entropy-aware marginal alignment, while the graph-free local expert learns solely from source node features and labels without graph propagation or target alignment. The two experts are optimized independently and combined only at inference through a task-level constant probability mixture, preserving complementary evidence without joint training, learned routing, or target pseudo-labels. Extensive experiments on ten datasets and 16 transfer tasks show that EviGDA outperforms state-of-the-art baselines. Complementary prediction paths add value beyond graph representation alignment.
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All authors Ziqian Liu, Yongxue Xu, Enze Zhang, Jiaqi Zhang, Hao Wang, Maolin Wang

Machine Learning · Cross-listed from cs.AI

How Strongly Should Task State Influence an LLM Agent?

Long-horizon assigned work requires an LLM agent to track the state of a task: which steps are done, blocked, cancelled, or open to repetition. Agent systems either keep this state as text in the prompt and rely on the model to read that text, or move the state into a module that enforces it, and each system is evaluated as a whole, so no one knows how much reliability comes from the state being shown, told, or enforced. We fix the task rules, the model, and paired episodes and vary how strongly task state reaches the agent: a raw transcript, an exact checklist, per-turn directives from a state machine compiled from the brief and advanced only by execution receipts, or an enforcement gate on that machine that refuses state-violating actions; every episode is scored by exact payload matching against dynamic ground truth. Across three models, two reasoning regimes, and two domains, four findings hold without per-turn reasoning: displaying accurate state is unreliable, an unverified ledger the agent writes itself beats an accurate checklist it is shown, directives help in proportion to the model's obedience, and enforcement needs no obedience but is bounded by the correctness of its state and by the matcher that maps requests to steps; per-turn reasoning at a 235B agent compresses these separations without repairing the text rungs. The same gate, compiled from $\tau^2$-bench's airline policy, raises a 235B agent's pass$^1$ from 0.39 to 0.54 and changes nothing for a 35B agent that rarely violates the policy; on PM-Bench, where acting turns on recognizing a cue rather than on state, showing the record is the best rung–matching or beating both gates and reversing the ledger-over-checklist finding–and enforcing the matcher's judgement drops a 35B agent below its raw transcript. Enforcement pays when failures are state-decidable and frequent, and hurts when the gate's judgement is wrong.
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Machine Learning · Cross-listed from cs.AI

Toolcompass: Guiding Tool Trialing, Not Suppressing It

Large language model (LLM) agents must generalize from tools seen during training to unseen tools at deployment. A key challenge is tool trialing, i.e., excessive trials waste the interaction budget, whereas selective trials enable exploration of unfamiliar tools. Existing outcome-based post-training leaves wasteful trials unguided, while turn-level supervision may suppress necessary exploration. We introduce ToolCompass, a post-training framework that guides tool trialing by organizing tool-call representations according to shared functions. Specifically, ToolCompass models each function class as a von Mises–Fisher distribution and jointly reduces intra-function variation across domains and increases inter-function separation. This structure transfers experience from seen tools to functionally similar unseen tools, directing exploration away from unrelated alternatives. ToolCompass requires no ground-truth call traces or unseen-tool access and incurs no inference overhead. Experiments on AppWorld and FTRL show consistent gains across GRPO, RFT, and DMPO. improves AppWorld OOD task success by up to 10.71 percentage points over vanilla post-training and performs best among competitive baselines on both benchmarks.
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All authors Junlin Fang, Chong Zhang, Do Nguyen-Thanh, Xiaogang Xu, Zhen Fang, Sean Du

Machine Learning

Marginal Log-Likelihood Increments under Dirichlet-Smoothed Markov Estimation

For a Dirichlet-smoothed transition model, the effect of adding one workflow trace to the training archive is an exact change in reference-weighted log likelihood. We derive that change and show that it is a weighted reduction of Kullback–Leibler divergence between the reference conditionals and the model. From this form we obtain an upper bound on the gain available to any acquisition, which expresses a millinat difference as a share of what is attainable, an exact covariance identity for the effect of the reference weighting, and a sign criterion for the interaction between two candidates, from which the batch objective is neither submodular nor supermodular. A case study on the BPI Challenge 2012 loan-application log measures all three and finds a positive selection result in one of the four combinations of reference weighting and budget unit. There, of two regressors fitted to identical descriptors and identical labels, the one that predicts individual increments far more accurately, median $R^2$ 0.87 against 0.62, realizes the smaller share of the attainable gain, 61 against 69 per cent, so ranking accuracy for individual traces is neither necessary nor sufficient for batch quality.
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Machine Learning

When Riemann flows with Wasserstein: Generative Modeling of Probability Distributions on Manifolds

Many scientific datasets, such as molecular conformational ensembles or single-cell tissue measurements, are naturally modeled as meta-distributions: distributions over probability measures on non-Euclidean domains. Existing generative methods largely assume Euclidean geometry and fail to capture this structure. We introduce Riemannian Wasserstein Entropic Flow Matching (RWEFM), a generative framework on the Wasserstein space $\mathcal{P}_2(\mathcal{M})$ of a Riemannian manifold $(\mathcal{M},g)$. RWEFM is trained by regressing a neural vector field onto Riemannian optimal transport velocities, using McCann displacement interpolations as conditional paths. We confirm theoretically that this construction leads to a valid flow matching approach on $\mathcal{P}_2(\mathcal{M})$ and introduce the Riemannian Entropic Map, a GPU-efficient approximation of the optimal transport map on manifolds. Our experiments show that by respecting the intrinsic geometry of the data, RWEFM can generate whole single-cell samples in hyperspherical latent spaces and protein conformational ensembles on the torus. As RWEFM requires only a geodesic distance and a projection operator, it is not restricted to manifolds with closed-form geometry, which we demonstrate by generating distributions on a general triangulated mesh.
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All authors Doron Haviv, Edward De Brouwer, Rishabh Anand, Rex Ying, Aïcha Bentaieb, Gabriele Scalia, Hector Corrada Bravo

Machine Learning

Targeted Review for AI-Assisted Biodiversity Surveys: Active Continuous-Score Occupancy Modeling

We increasingly use machine learning to label scientific datasets. The models we develop and deploy are improving all the time, but they are not and will likely never be perfect. Mistakes matter, as errors can propagate into our scientific understanding, particularly when systematically biased. Very reasonably, scientists thus review substantial proportions of ML-generated labels to verify or correct mistakes in pursuit of ensuring their scientific findings are not biased by ML. In this work, we focus on helping scientists optimally allocate this reviewing effort relative to their scientific goals. We focus on a specific class of scientists (ecologists) and a specific, widespread, and impactful modeling target (occupancy modeling, which estimates where species are likely to occur, conditioned on environmental factors). We introduce Active Continuous-Score Occupancy Modeling (ACORN), a method that incorporates ML predictions into occupancy models and strategically selects samples for expert review that are maximally informative for downstream ecological analysis. Across camera-trap and bioacoustic datasets, our method recovers ecological conclusions close to those obtained from fully human-labeled data, while requiring substantially fewer expert reviews than non-targeted review policies. Our results suggest that ML-assisted scientific workflows should optimize expert effort for downstream inference, rather than for classifier accuracy alone, especially when human review budget is limited. Our code is available at https://github.com/timmh/acorn
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All authors Timm Haucke, Lauren Harrell, Justin Kay, Mary Clapp, Sara Beery

Machine Learning

From Experts to Sub-experts: Fine-grained Parameter-Efficient Fine-Tuning for MoE LLMs

As large language models (LLMs) scale rapidly, dense full-parameter adaptation becomes increasingly expensive, motivating sparse and modular architectures such as Mixture-of-Experts (MoE) models. This shift raises a key question for parameter-efficient fine-tuning (PEFT): at what granularity should parameters be selected and updated? Existing PEFT methods such as LoRA operate on predefined weight matrices, while expert-level sparse tuning methods update entire selected experts. However, we observe that activated experts are internally sparse, with only a small fraction of intermediate channels strongly responding to downstream tasks, indicating that expert-level adaptation is still too coarse. We propose NSFT (Neural Sub-expert Fine-Tuning), a fine-grained PEFT framework that refines MoE adaptation from experts to sub-experts. NSFT decomposes each expert along the intermediate dimension into structured channel groups and selects task-relevant sub-experts by combining routing importance with intra-expert activation saliency. To optimize sparse partial updates, NSFT further introduces learning-rate scaling and dynamic gradient scaling to compensate for the reduced effective update magnitude. Experiments on OLMoE and Ling-mini-2.0 across challenging domain-specific tasks and general benchmarks show that NSFT consistently outperforms representative PEFT and expert-level sparse tuning baselines, while using substantially fewer trainable parameters and preserving competitive general capability. These results suggest that sub-expert-level adaptation is a more precise and efficient PEFT paradigm for MoE LLMs.
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All authors Zhentao Tan, Chang Liu, Yao Liu, Yue Wu, Jieping Ye

Machine Learning · Cross-listed from cs.RO

CODA: Depth-Aligned Scene Completion and Object Decomposition from a Single RGB-D Image

Robots operating safely in cluttered everyday environments often need to infer scene geometry from partial observations. Methods that detect objects in 2D and reconstruct them independently struggle in such scenes: a missed object is never reconstructed, a merged detection can fuse two objects, and separately reconstructed meshes may overlap or fail to touch their supporting surfaces. We introduce CODA (Complete Once, Decompose Afterward), a generative model that instead reconstructs the complete scene geometry from a single unsegmented RGB-D image, then separates the surface into the surrounding environment and movable objects. Still, generated scene geometry can drift from the observed partial point cloud. To reduce this drift, CODA uses two explicit 3D grounding mechanisms to keep reconstructed geometry consistent with observed surfaces while completing unseen regions. Experiments on HomebrewedDB and our custom cluttered-scene dataset show more accurate reconstructions and a higher fraction of objects remaining in place under simulated gravity than both object-first and scene-first baselines.
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All authors Dongwon Son, Junhyek Han, Yoontae Cho, Minseok Lee, Hong-seok Choi, Jiwook Choi, Hyungjin Kim, Beomjoon Kim

Machine Learning

Efficient Cost-Aware LLM Evaluation via Bayesian Bandit Gittins Indices

Exhaustively evaluating every candidate LLM configuration on every benchmark item to identify a high-performing one is costly. We formulate configuration selection as a cost-aware Bayesian bandit problem and propose GittinsEval, which draws on the Bayesian-optimal Gittins policy to determine which configuration to evaluate next and when to stop. We extend the policy with an anytime recommendation rule over both fully and partially evaluated configurations, using an LCB-style score to account for posterior uncertainty. GittinsEval is computationally efficient, requiring only lightweight online updates after offline precomputation. Across GSM8K, PIQA, AlpacaEval, and MMLU response matrices, GittinsEval is consistently competitive, with particularly strong gains over configuration-level Bayesian optimization on large-example benchmarks and over cost-unaware bandit baselines on large-candidate tasks. Crucially, GittinsEval often attains near-zero simple regret using only 1% to 2% of the exhaustive-evaluation cost; it also offers an adaptive stopping rule that typically triggers at 1% to 10%.
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Machine Learning · Cross-listed from cs.AI

Ladders of Thought: A Self-Evolving Curriculum of Progressively Simplified Reasoning Traces

Large language models (LLMs) excel at reasoning when scaled to hundreds of billions of parameters, but small- and mid-scale models remain brittle reasoners even with knowledge distillation (KD). We present Ladders-of-Thought (LoT), a framework that improves reasoning by combining progressive question rewrites with a self-evolving curriculum. LoT automatically generates semantically faithful but easier variants of reasoning problems, organizes them into difficulty buckets using step-based measures, and employs a self-evolving bandit scheduler to allocate training adaptively. Evaluated on two reasoning domains, math and multi-hop reasoning, across 1-8B models from different families, LoT consistently improves over KD. It delivers large gains on arithmetic tasks (e.g., +32 percentage points on AddSub, +25pp on SVAMP), +2-8pp improvements on in-domain test splits, and strong though dataset-dependent benefits on multi-hop reasoning (e.g., +16pp on QASC, +25pp on StrategyQA). LoT also converges faster than staged curricula, highlighting the value of adaptive progression. These results show that progressive rewrites coupled with adaptive curricula provide a simple yet effective recipe for strengthening reasoning in smaller LLMs.
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All authors Minghui Liu, Thomas Magelinski, Dehao Yuan, Qi Yu, Furong Huang

Machine Learning

An Exploratory Replica-Overlap Probe of the Grokking Transition

We trained 64 independently seeded networks in four configurations, continuing each to sustained convergence or a 40,000-epoch ceiling. We then asked whether an RSB-inspired distribution of pairwise weight overlaps changes across the grokking transition. It is the alignment step, not the overlap statistic, that determines what this registered probe can report. The registered implementation permutes hidden units without the corresponding bias and head-internal permutations and therefore does not preserve the network function. Every q_wt value computed through this alignment inherits the defect; q_fn does not, because it is computed from predictions of the unpermuted models. The numerical-precision requirement also failed, and an audit found protocol deviations. Consequently, the pre-registered rule gives no verdict: registered outcome UNDETERMINED (reason code C0_INSTRUMENT_INVALID). These data provide neither a confirmatory null nor a validated reading of the Parisi order parameter. Only frac40 cleared the 12/16 checkpoint-completeness requirement. For this configuration, a post-hoc criterion applied to the same data gave a Hartigan-dip interval containing zero (95% CI for Delta dip = [-0.017, 0.034]), whereas the overlap standard deviation increased by a factor of about 5.6. A post-hoc calibration assigns the dip test zero power at the simulated separations; the interval is therefore uninformative, not evidence of no change. The standard-deviation ratio is the only statistic here with power at the observed effect. Ensemble loss was near-flat only under the pre-specified 1% threshold. Finally, grokking rates of 0/16, 11/16 and 16/16 remain descriptive because train fraction is confounded with split identity.
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2609.25634 · 22 Sep · 13 pages, 5 figures. Pre-registered study; the registered decision rule returns UNDETERMINED (reason code C0_INSTRUMENT_INVALID) because the registered alignment implementation is not function-preserving. Reported as an honest negative/instrument-invalid result

Machine Learning · Cross-listed from cs.AR

Accelerating the Mitigation of LLM Inference Nondeterminism Across GPU Architectures

Large language model (LLM) outputs are expected to be reproducible under greedy decoding, yet in practice the same model, prompt, and software stack produce different outputs on different GPUs. The root cause is floating-point non-associativity combined with hardware-dependent kernel selection. Inference frameworks select different matrix-multiplication kernels on each architecture, with different parallel reduction orders and unspecified tensor-core arithmetic, and the resulting rounding differences can flip output tokens. Existing solutions have imperfect cross-architecture reproducibility and incur a significant performance penalty. We present a solution employing a set of fixed-configuration fused-upcast GEMM kernels that load 16-bit weights from memory, upcast them to FP32 in registers, and accumulate with IEEE-754 arithmetic in a reduction order that is a pure function of the problem shape and is therefore independent of the device, its SM count, or kernel scheduling. By fixing the floating-point reduction order as a function of problem shape alone, every GPU runs the same operation sequence, so cross-architecture reproducibility of the linear layers reduces to correct IEEE-754 arithmetic rather than to rounding differences staying below a tie-flip threshold. We confirm our solution's linear-layer outputs are bitwise identical across NVIDIA Ampere, Ada, and Hopper GPUs, while running $1.17$ to $3.1\times$ faster end-to-end than the state-of-the-art solution and cutting weight-memory traffic in half.
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All authors Liam Cooper, Shinnung Jeong, Hyeran Jeon, Jeffrey Young, Hyesoon Kim

Machine Learning

What Should a Self-Teacher See? Privileged Context Design for On-Policy Self-Distillation

More privileged information does not always make a better teacher. We study this tension in on-policy self-distillation (OPSD), where a self-teacher scores the student's own rollouts under privileged context, conventionally a complete reference solution that bundles the final answer with one particular reasoning path. Holding the student view and training fixed within each scale, we compare that default against three abstractions compiled offline, a named strategy, a method-independent framing, and a problem category, and against an answer-only control that keeps the destination but removes the path. In the primary runs on competition mathematics, the best intermediate contexts improve the in-domain peak mean over the full solution by 1.4 points at 4B and 1.6 at 8B, while storing an order of magnitude fewer hint tokens. Comparisons across three seeds also show positive mean gains for the framing and category contexts at both scales. Answer-only conditioning remains competitive in the primary runs, within 0.2 points of the full solution at these scales. The preferred context varies with student scale and task. Initial teacher-student KL does not order downstream performance. What a self-teacher should see is therefore not everything it could, but the level of abstraction its student can still act on.
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All authors Kanghui Tian, Siyuan Liu, Tianxiang Jiang, Shuai Dong, Yizhuo Li, Tian Ding, Yuan Guo, Songze Li, Haowen Hou, Congcong Wang, Yi Wang

Machine Learning · Cross-listed from stat.ML

Generalized Deep Regression for Repeated Measurements

In this paper, we study the estimation of a marginal regression function from independent units with repeated binary, count, or continuous responses using ReLU deep neural networks. In the model, we assume that the dependence is generated by an unobserved random mean function within each unit. We then fit a neural network with a convex generalized regression loss. We show an oracle inequality by separating conditional measurement variation from between-unit variation. In addition, we prove that with $n$ units and $m$ measurements per unit, ReLU networks can attain an integrated mean squared error of order $n^{-1}+(nm)^{-2\beta/(2\beta+d)}$, up to logarithmic factors, over $\beta$-Hölder classes. We also derive a weighted oracle inequality for unequal cluster sizes and a rate for compositionally smooth functions. For pointwise ensemble inference, we give a projection central limit theorem and prove infinitesimal jackknife consistency under an explicit asymptotic linearity condition. Simulations and real data examples are provided to support our theoretical findings and practical implications.
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Machine Learning

Rewired or Gated? How Instruction Tuning Shapes Knowledge-Conflict Circuits in LLMs

In language models, the choice between believing the prompt and believing the weights is made by a handful of identifiable attention heads. Instruction tuning changes how models behave under conflict, but whether it rewires the underlying circuit or merely gates/reweights already present components, remains unknown. We provide the first mechanistic base-vs-instruct comparison of conflict-resolution circuits, across three families (Llama-3.2-3B, Qwen-2.5-3B, Gemma-3-4B). Five independent methods, node and edge attribution, superposition role analysis, causal ablation, and path patching, converge on gating, with the same heads, in the same late-layers, are found to be reweighted rather than replaced with a high node overlap (0.60-0.82). Behaviorally, tuning shifts models toward parametric memory, making instruct models reject a terse counterfactual context far more than base ones, the opposite of a naive user-following expectation. Yet this added skepticism is a factor of framing since it disappears when the same false claim is delivered as a coherent, evidential passage. The robustness that instruction tuning buys against terse injection is therefore real but narrow. More broadly, we believe that because the conflict circuit is preserved rather than rebuilt, interpretability and control tools calibrated on base models should transfer directly to their deployed instruct siblings.
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All authors Shubham Santosh Pandere, Gautam Ranka, Ritika Varshney, Navya Deshmukh, Roushni Sareen, Roshan Kumar Singh

Machine Learning · Cross-listed from cs.AI

Transformer Heads Looking for Order

In this note, we show that the problem of checking, whether a sequence of bits is ordered, is not doable by 1-head 1-layer transformers but is doable by a 2-head 1-layer transformer. Unlike similar previous results, our results assume the model where transformers have an output MLP.
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All authors Jasper van Doornmalen, Alexander Kozachinskiy, Corinna Mathwieser, Tomasz Steifer, Felipe Urrutia, José Verschae, Przemysław Andrzej Wałȩga

Machine Learning

EMGBlend: Heterogeneity-Aware Self-Supervised Pretraining for Gesture and Force Decoding

Public surface electromyography (EMG) datasets vary widely in electrode layout, channel count, frequency support, and size. Simply mixing them for pretraining can misalign channel semantics, introduce spectral targets that some devices cannot observe, and let large or high-channel-count datasets dominate learning. We introduce EMGBlend, a self-supervised framework designed around these differences. It combines shared channel patches with geometry-aware attention, restricts spectral targets to each recording's supported frequency band, and balances exposure across data sources. We pretrain a 109M-parameter model on 11 public EMG sources and evaluate it on gesture recognition, continuous-force regression, and contact classification. EMGBlend consistently outperforms matched random initialization and waveform reconstruction controls. Fixed-budget source controls show that multi-source pretraining improves gesture recognition and remains competitive for force decoding. Ablations confirm that geometry, band-aware targets, and source balancing each contribute to transfer, although cross-person NinaPro force estimation remains difficult. Overall, EMGBlend shows how heterogeneous EMG datasets can be combined through explicit mechanism design rather than simple concatenation. Code is available at https://github.com/tamanano/EMGBlend
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All authors Yuwei Jia, Cheng Zhong, Jinyang Yu, Zhe Cui

Machine Learning · Cross-listed from stat.ML

Scalable Minimum-Volume Simplex Estimation with Non-asymptotic Analysis

We study the estimation of a $K$-dimensional simplex from $N$ i.i.d.\ points sampled uniformly from its interior; the observations are convex combinations of $K+1$ unknown prototypes. Existing polynomial-time estimators need cubic per-sample work or $O(NK)$ storage and are impractical at $N\sim 10^6$–$10^8$. We propose DeepMVSA, which re-expresses the minimum-volume principle in neural implicit form: a lightweight coordinate network generates the mixing weights and a triangular LU-type parameterization the dual simplex matrix, reducing the trainable-state memory to $O(K^2)$, independent of $N$, and the cost per data pass to $O(NK^2)$. We prove a non-asymptotic sample-complexity bound of the polynomial-time benchmark order for a localized surrogate estimator; an oracle inequality for every global minimizer of the neural objective, with volume-inflation control and an explicit shrinkage bias; a conditional end-to-end error budget separating statistical, approximation, optimization, and enclosure-residual terms on an explicit envelope event; and two-point lower bounds: at any noise level $\sigma>0$ fixed independently of $N$, the $N^{-1/2}$ scaling is unimprovable in its $N$-exponent. Experiments with up to $N=10^8$ synthetic observations are consistent with the predicted accuracy and scaling, and feasibility on real scenes of $\sim 10^7$ pixels is demonstrated.
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Machine Learning

SambaGraph: Action-Reaction Spatio-Temporal Graphs for Soccer Tactical Response Modeling

Soccer tactics are interactive: an attacking action changes the opponent's defensive problem, and the observed response depends on the multi-agent match state. We introduce SambaGraph, an action–reaction spatio-temporal graph dataset and benchmark for soccer tactical response modeling. From tracking and event data for all 64 matches of the 2022 FIFA World Cup, we curate 4,070 action-centered episodes represented as temporally aligned 23-node player–ball graph sequences with attack/defense views, response labels, and 26,270 split-safe attack–defense pairs. We study three questions: whether observed responses can be classified from graph episodes, whether successful defenses can be retrieved for a query attack, and whether graph-derived summaries support grounded LLM reasoning. A compact signature MLP obtains $0.796\pm0.007$ macro-F1 for response classification, while a fused graph–signature dual encoder reaches $0.471\pm0.029$ Hit@5 and $0.655\pm0.051$ Hit@10 for full-bank defensive retrieval. Hard negatives maximize pair discrimination but not retrieval quality. Local LLMs underperform supervised encoders for direct classification and do not improve over a strong original order in eight-candidate reranking, but they provide grounded tactical rationales. These results position SambaGraph as a reproducible benchmark for graph-based soccer strategy-response research. Code and dataset are available at: https://github.com/areyesan/SambaGraph.
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Machine Learning · Cross-listed from cs.CV

RootQuantV2: Adapting a Vision Foundation Model for Root-Trait Regression from Minirhizotron Imagery

A lack of high-throughput phenotyping solutions for root traits in field-grown crops has severely constrained understanding and improvement of below-ground traits and processes. Minirhizotrons are the standard non-destructive root-phenotyping method in field environments. Computer vision solutions are needed to allow automated trait estimation at scale, but training data is scarce and human annotations are often inaccessible because they reside in proprietary software that only exports per-image scalar totals of root length and surface area. Nevertheless, large numeric archives of these root traits already exist. RootQuant showed that the traits can be predicted directly from the whole image by regression, thus removing manually traced masks from the pipeline; RootQuantV2 takes that idea further by replacing RootQuant's CNN backbone with a self-supervised ViT. We adapt a frozen DINOv3 ViT-L/16 with a hybrid parameter-efficient scheme. Training only 11.9M parameters (3.78% of the model), RootQuantV2 achieves length and area $R^2$ of 0.950 and 0.930, respectively, while lowering length/area RMSE by 24.3%/20.7% over RootQuant. RootQuantV2 thus repurposes legacy numeric archives for high-throughput, automated root trait estimation.
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Machine Learning · Cross-listed from cs.RO

HABILIS Brain 0: Geometry-Change Supervision for Vision-Language-Action and Residual Flow Recovery

Vision-language-action policies benefit from geometric supervision, but current-frame geometry alone does not explicitly describe the changes associated with manipulation. This design is motivated by the goal of learning an embodiment-agnostic visual interface that can be pretrained across robot and egocentric video before robot-specific action alignment. We introduce Geometry-Change VLA (GC-VLA), which learns to predict multiview future-current geometry-change tokens from current observations. Offline frame pairs define a nominal 0.5-second prediction horizon; future observations are used only to construct training targets. Stage 1 trains a geometry-change vision-language model (GC-VLM). Stage 2 introduces a continuous ActionExpert and aligns it with robot actions while stopping action-flow gradients at the VLM interface. Stage 3 enables these gradients to update the trainable VLM components jointly with the ActionExpert. Stage 4 freezes GC-VLA and applies Geometry-Conditioned Residual Flow (GCRF), using a binary intervention router and a single bounded residual velocity policy learned from closed-loop feedback. GC-VLA achieves 95.20% success on LIBERO, and GC-VLA with GCRF achieves 99.55%. Inference uses current observations and the learned GC representation without executing the offline target encoders.
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All authors Jinu Pahk, Jesoon Kang, Taegeon Park, Jisu An, Soo Min Kimm, Jaejoon Kim, Byoung-Tak Zhang

Machine Learning · Cross-listed from cs.SD

Synthesis and editing of multi-instrument audio mixtures using scalar-quantised latents with MIDI Span conditioning

Music creation often involves iterative refinement, changing selected musical details while retaining the rest. To support such refinement, we introduce SpanSynth-Edit, a flow-matching model for MIDI-guided synthesis and editing of multi-instrument audio mixtures using low-frame-rate scalar-quantised latents. MIDI Span encodes instrument-labelled note lifecycles as unordered event sets with continuous-valued attributes and pools each set into one conditioning vector per audio-latent frame. The model uses contextual audio for instrument-specific timbre guidance and supports editing by resynthesising the target region from revised MIDI. Experiments on single- and multi-instrument benchmarks show competitive performance and demonstrate within-frame onset control. We also discuss limitations of transcription-based note-adherence evaluation.
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All authors Sungkyun Chang, Keshav Bhandari, Simon Dixon, Emmanouil Benetos

Machine Learning

DefaultGNN: A Dual-Perspective GNN Framework for Predicting Corporate Default from Buyer-Seller Transaction Networks

Corporate default prediction is a core problem in financial risk management, yet traditional credit models rely heavily on financial statements that are often sparse or unavailable for many firms. Corporate transaction networks offer a complementary view of real economic activity, but how risk propagates through buyer-seller relationships remains underexplored. We conduct a large-scale empirical study using real-world electronic tax-invoice data spanning six years that links transaction histories with default events, revealing that transaction-driven risk is both role-dependent (buyer or seller) and scale-dependent. Based on these findings, we construct multiplex buyer-view and seller-view transaction networks and propose DefaultGNN, a dual-perspective graph neural network-based framework for corporate default prediction. DefaultGNN integrates both views to model how risk flows through transactional relationships, achieving strong improvements over both attribute-based and graph-based baselines, especially for firms with limited intrinsic risk signals. We further provide interpretable network-based explanations by visualizing how distressed trading partners contribute to default risk. In collaboration with a licensed credit rating agency, we validate that DefaultGNN's predictions complement existing credit scoring models, improving approval rates by 7-11%p without increasing default risk among approved firms. The source code can be found at https://github.com/jhkim611/DefaultGNN
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All authors Junghoon Kim, Hyunsung Kim, Seungyoon Choi, KyoungYong Park, Jihun Lee, YongGu Ji, Chanyoung Park

Machine Learning

A JEPA Recipe for Tabular Foundation Models

Tabular foundation models learn to predict cell values in context, whereas world-model self-supervision asks for prediction in representation space (LeCun, 2022; Assran et al., 2023). On a tabular foundation-model prior, the latent term of a joint-embedding predictive architecture (JEPA) collapsed in our earlier runs and took the encoder with it to a constant map. We report a recipe under which the latent term survives to convergence beside the value objective: the value head reads the encoder field rather than the predictor, and the target is an exponential moving average (EMA) difference. To bound its cost against the value-only arm, both arms train until a plateau rule stops them, with no fixed step budget. A fixed horizon had confounded a slowdown with a ceiling, since the value-only arm was still improving well past the usual budget. At convergence, in one run per arm, the JEPA arm trails the value-only arm across 147 real datasets, 32:70 wins to losses on classification (29:63 with one entry per dataset name) and 8:24 on regression, the margin small on classification and wider on regression, and the count leans the same way in each stratum and each benchmark. The JEPA arm (jepa) needs 1.42 times as many steps as the value-only arm (ds), and 1.66 times its wall-clock, to reach its plateau.
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Machine Learning · Cross-listed from cs.CL

Matryoshka attribution: Learning to attribute language model outputs to representations and weights

Attributing language model outputs to their internal computations is an open problem in interpretability. Existing methods, which use causal interventions, gradients, or learnable masks, either are infeasibly expensive or struggle to identify actual causally-important internal computations. We propose framing attribution as the problem of identifying nested subsets of internal components which minimise a downstream loss. To learn this task, we introduce Matryoshka Attribution (MAttr), a mask learning method that parametrises the mask with a simple differentiable sigmoid top-$k$ operator. We supervise training over all sparsities simultaneously by randomising $k$ over training, resulting in a learned ordering of components by attribution score. MAttr achieves number 1 on the official leaderboard of the Mechanistic Interpretability Benchmark (Mueller et al., 2025); our method identifies sparse and task-transferrable circuits across varying circuit bases. As a practical application, we show that MAttr can be trained with reinforcement learning to identify weight changes responsible for downstream behaviours in LLM finetuning. We train MAttr on refusal judge scores and find that restoring $1\%$ of Llama 3.1 8B Instruct's weights to their base model state is sufficient to remove refusals while maintaining capabilities. We view MAttr as a successful formulation of interpretability into a learnable objective that we can tackle with gradient descent, and encourage future work along these lines.
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All authors Aryaman Arora, Kirill Acharya, Nathan Hu, Yanzhe Zhang, Noah Goodman, Dan Jurafsky, Christopher Potts

Machine Learning

Hill Sampling for Test-Time Scaling: A Simple and Better Alternative to Repeated Sampling, Evolution, and Training

Large language models (LLMs) can improve solutions to verifiable scientific and algorithmic problems by spending additional computation at test time. Recent systems achieve strong results with increasingly elaborate evolutionary search harnesses or by updating model parameters during test-time training. We ask how much of this machinery is necessary. We introduce Hill Sampling, a form of hill-climbing optimization that repeatedly samples candidate programs from a frozen LLM, retains the best program found so far, and conditions all subsequent samples on that program. We evaluate the method on circle packing, sums and differences of sets, and Erdos' minimum-overlap problem using three open-weight models. Hill Sampling sets a new state of the art on circle packing among published methods, improves over the AlphaEvolve reference on Erdos' minimum-overlap problem, and achieves strong results on sums and differences of finite sets. The circle-packing and Erdos results require only hours of wall-clock time on eight NVIDIA H100 GPUs. We compare Hill Sampling against what is, to our knowledge, the largest application by parameter count of evolution strategies (ES) to LLM weights at test time. Surprisingly, when evaluating a method by the best program it generates, we find that learning model weights via ES is worse than invoking ES with a learning rate set to zero, i.e., using random weight-space perturbations to search for better models. Moreover, repeated sampling outperforms both ES methods, and Hill Sampling is the strongest of all. These results suggest a simple test-time compute allocation strategy: repeatedly sample edits to the best verified solution found so far before introducing additional complexity, such as adding archives, diversity mechanisms, evolutionary scaffolds, or test-time parameter learning.
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Machine Learning · Cross-listed from physics.ao-ph

FAST-ML: A Hybrid Physics-Machine Learning Framework for Tropical Cyclone Intensity Forecasting

Rapid intensification (RI) remains one of the most consequential and difficult aspects of tropical cyclone (TC) forecasting. Although full-physics numerical weather prediction models can represent the processes governing RI, resolving storm-environment interactions remains computationally expensive, while purely data-driven approaches often lack physical interpretability. We present FAST-ML, a hybrid framework that bridges data-driven efficiency with physical constraints. A physically informed dual-stream neural parameterization ingests 3D ERA5 fields to diagnose ventilation controls—environmental wind shear and mid-level entropy deficit. By optimizing these parameters end-to-end through a differentiable FAST intensity model, this architecture establishes a robust new paradigm for observation-driven parameter optimization, ensuring storm evolution remains strictly governed by thermodynamic principles. By better capturing the storm's continuous intensity evolution, FAST-ML improves upon its physical baseline, reducing ensemble CRPS across forecast lead times, with a reduction of approximately 31% at 60 h and nearly halving the RI false alarm ratio without sacrificing detection skill. In a 100-member ensemble configuration, FAST-ML produces intensity forecasts comparable to FNV3 for selected storms under the evaluated input configurations. Furthermore, zero-shot tests on selected Eastern Pacific storms provide encouraging evidence of cross-basin transferability. FAST-ML provides a modular intensity forecasting framework that can be coupled with externally supplied storm tracks and environmental fields. It demonstrates that observation-driven parameter learning within physically constrained dynamics simultaneously enhances accuracy, interpretability, and computational efficiency.
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All authors Shijie Xiao, Jonathan Lin, Thomas Ehrmann, Ali Sarhadi

Monday 21 September

Machine Learning

Energy Time-Series Imputation with Differentially Private Diffusion Models via Clipping-Aware Objective Conditioning

Reliable recovery of missing measurements is important for monitoring and analysis in energy time-series systems, where fine-grained measurements may contain sensitive temporal information. Diffusion models trained with differentially private stochastic gradient descent (DP-SGD) provide a promising framework for privacy-sensitive energy time-series imputation. Under cosine diffusion schedules, late timesteps correspond to low signal-to-noise ratio (SNR) conditions, where standard $\varepsilon$-prediction can induce large pre-clipping gradients. Such gradients are more likely to be clipped, reducing the retained optimization signal. The artificial intelligence (AI) contribution lies in formulating this objective–clipping interaction as an objective optimization problem under fixed-threshold DP-SGD and developing timestep-aware objective conditioning for diffusion-based energy time-series imputation. The method adopts $v$-prediction to mitigate late-timestep gradient amplification, uses static loss weighting as a uniform-scaling control, and introduces diffusion-schedule-aware dynamic weighting for stronger attenuation before clipping. For the engineering application, we evaluate the method on five real-world energy time-series datasets across random point missingness, contiguous block missingness, persistent outages, and multiple missing-data severities. Under matched DP-SGD settings, the proposed method consistently improves imputation utility over the $\varepsilon$-prediction baseline. Gradient diagnostics reveal lower upper-tail pre-clipping gradient norms, reduced clipping fractions, and stronger attenuation at late low-SNR timesteps, supporting the effectiveness of clipping-aware objective conditioning for energy time-series imputation.
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All authors Huizhen Huang, Yu Li, Tao Huang, Chen Hou

Machine Learning · Cross-listed from cs.CL

Tracing mechanisms of sycophantic agreement in language models

Sycophantic agreement in language models refers to the tendency to overly affirm a user's stated beliefs or preferences, often at the expense of factual accuracy. Although it is widely recognized as an alignment failure, its underlying mechanisms remain poorly understood. In this work, we use causal mediation analysis to identify the mechanisms behind sycophantic agreement. We show that a stated opinion is incorporated into the residual stream of the final prompt token early, where it biases subsequent answer retrieval. A sparse set of early attention heads carries this opinion signal. Ablating these heads substantially reduces sycophancy while leaving factual accuracy largely intact. The same heads carry the opinion when it is explicitly stated, regardless of how it is phrased. When an opinion is not stated explicitly but instead conveyed through content-free pushback (e.g., “Are you sure?"), we find a distinct set of heads that suppresses the model's original correct answer to promote a revised answer. By providing a mechanistic account of how opinions induce sycophantic agreement, this work takes a step toward developing more targeted and reliable alignment interventions.
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All authors Sixing Chen, Zhuofan Josh Ying, Logan Riggs Smith, Jeremy Wertheimer, Natalie Shapira

Machine Learning · Cross-listed from cs.CV

Statistical Testing for Multiple Instance Learning via Selective Inference with Applications to Computational Pathology

Multiple instance learning (MIL) is widely used in computational pathology because it enables weakly supervised analysis of whole-slide images (WSIs) without requiring patch-level annotations. In attention-based MIL, instances with high attention scores are often interpreted as diagnostically important regions and used as visual explanations. However, attention scores alone cannot determine whether selected high-attention instances are significantly different from normal instances, limiting the reliability of attention-based explanations. In this paper, we formulate the evaluation of high-attention instances as a statistical hypothesis testing problem. Specifically, we assess whether a selected high-attention instance significantly deviates from a representative normal reference instance selected based on feature similarity. A major challenge is that both the target instance and the reference instance are selected through data-dependent procedures, rendering standard hypothesis testing invalid. To address this issue, we introduce a selective inference (SI) framework that explicitly accounts for the selection events induced by attention-based instance selection and adaptive reference selection, thereby enabling the computation of valid selective $p$-values conditional on these events. Experiments demonstrate Type-I error control on synthetic and MNIST-based data and practical applicability to pathological WSIs, with higher statistical power than the conventional over-conditioning approach.
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All authors Noriaki Hashimoto, Shuichi Nishino, Teruyuki Katsuoka, Tomohiro Shiraishi, Daiki Miwa, Hiroyuki Hanada, Jun Sakuma, Hidekata Hontani, Hiroaki Miyoshi, Ichiro Takeuchi