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Saturday 20 June

Machine Learning

Evolving Spatial Weights for Cartographic Synthesis

The integration of multiple thematic data layers into a single composite map, known as the cartographic synthesis problem, is typically addressed through expert-driven weighting schemes. This study presents a multi-objective formulation of cartographic synthesis grounded in spatial autocorrelation structure. We develop a bi-objective evolutionary framework, GIS-moGA, that estimates layer weights by simultaneously maximizing global spatial structure, measured by Global Moran's I, and minimizing local spatial heterogeneity, measured by the variance of Local Indicators of Spatial Association (LISA). Because naive evaluation of spatial relationships requires O(N^2) operations, direct computation becomes impractical for larger datasets. We address this challenge by exploiting the 97.7% sparsity of queen contiguity matrices, reducing effective complexity to O(N k) and enabling scalable municipal-level analysis. The framework is evaluated on a high-dimensional spatial epidemiology dataset with N = 523 units from Araraquara, Brazil. A 64-scenario experimental design is used to examine evolutionary behavior across parameter settings. Results show that higher mutation rates are important for maintaining population diversity and preventing premature convergence in spatially autocorrelated fitness landscapes, where crossover operators can disrupt geographically coherent structures. Compared with expert-derived Analytic Hierarchy Process baselines, the resulting Pareto fronts show substantial hypervolume gains and significant improvements in spatial coherence (p < 0.001, Cliff's delta = 0.87). These findings provide a systematic and scalable framework for data-driven geographic multi-criteria decision analysis.
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All authors Gesiel R. Lopes, Roberto F. da Silva, Mellina Yamamura, Sergio H. V. L. de Mattos, Antonio M. Saraiva, Alexandre C. B. Delbem, Eric K. Tokuda

Machine Learning

On the Expressive Power of Weight Quantization in Large Language Models

In recent years, weight quantization that encodes the learnable parameters of large language models in an $n$-bit format has garnered significant attention due to its potential for model compression and inference acceleration. Many practical techniques have been developed; however, the theoretical understanding of many aspects, especially the approximation and degradation of expressive power as the number of quantization bits decreases, remains unclear. In this paper, we provide a theoretical investigation into the expressive capability of large language models relative to the number of quantization bits. We argue that 1.58-bit is the limiting precision for weight quantization by establishing the universal approximation and expressive collapse properties of weight-quantized models with respect to the number of quantization bits. Additionally, we confirm that weight quantization leads to expressive degradation, in which the expressive capacity of weight-quantized models degrades polynomially as the number of quantization bits decreases. These theoretical findings provide a solid foundation for advancing weight quantization in the context of scaling laws and shed insights for future research in model compression and inference acceleration.
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Machine Learning

SamatNext v0.2-B: An Exploratory Study of RMS-Normalized Hybrid Decoders for Curriculum Retention in Small Code Models

Standard autoregressive Transformer decoders can often exhibit substantial forgetting under sequential fine-tuning on shifting curriculum distributions. This technical report evaluates SamatNext v0.2-B, an experimental 356M-parameter hybrid sequence decoder that alternates Differential-Attention-style layers with DeltaNet-inspired simplified linear-state mixer layers using RMS normalization and output scale calibration. We study the model under a controlled staged Python code curriculum and compare it with a parameter-matched Transformer baseline. In this setting, SamatNext v0.2-B achieves a 100.0% pass rate on the controlled Stage 5 holdout while retaining 98.8% of adjacent Stage 3 semantic behavior and reaching 12.0% on the Stage 2E early syntax holdout. The strongest Transformer baseline reaches 97.6% on Stage 5 but retains only 6.0% of Stage 3 behavior. Both architectures remain weak on long-horizon early-stage retention, so the result should be interpreted as evidence of an altered retention/plasticity tradeoff in this controlled setting, not as a general solution to catastrophic forgetting. Code, model specifications, evaluation scripts, and result tables are provided for independent verification.
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Machine Learning · Cross-listed from stat.ML

Variance-Tilted Diffusion Models for Diverse Sampling

Diffusion models are typically sampled independently, even when the downstream objective is to obtain a diverse set of candidates. We introduce a variance-weighted batch distribution that favours collections of samples with large empirical spread after a prescribed linear feature map. The target is specified explicitly, and the sampler is derived as the corresponding Doob $h$-transform of independent diffusion dynamics. The resulting correction has a compact form: an interaction term that repels posterior denoised means, together with a curvature term that moves particles to the region of higher feature variance. This yields an interacting-particle sampler with a transparent probabilistic target rather than a heuristic repulsive drift.
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Machine Learning · Cross-listed from cs.CV

MultiMem: Measuring and Mitigating Memorization in Multi-Modal Contrastive Learning

Memorization in machine learning models enables high performance on rare in-distribution samples by capturing their atypical patterns. However, it also causes harmful retention of noise and outliers, degrading generalization. While memorization has been extensively studied in both supervised and self-supervised learning in the vision domain, it remains unexplored in multi-modal contrastive learning. We address this gap by introducing MultiMem, the first metric designed to quantify memorization in multi-modal contrastive learning. Through our systematic analysis, we demonstrate that cross-modal semantic misalignment has the strongest influence on memorization, with text being the dominant modality driving memorization, followed by video, image, and audio. We show that targeted augmentations applied across all modalities effectively reduce memorization as measured by our MultiMem metric and improve model performance. Overall, this work establishes the first framework for measuring and mitigating memorization in multi-modal contrastive learning, preventing harmful data retention and contributing to higher-performing models.
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All authors Wenhao Wang, Franziska Boenisch, Michael Backes, Adam Dziedzic

Machine Learning · Cross-listed from cs.SD

An Analysis of Untrained Deep Reservoir Networks for Audio Surveillance

In this paper, we investigate untrained recurrent models from the Reservoir Computing (RC) paradigm for audio surveillance, focusing on bidirectional Echo State Networks with different depths, from shallow to deep configurations, for emergency sound event detection. We evaluate these models on the MIVIA Audio Events dataset in a multiclass setting across different Signal-to-Noise Ratio (SNR) levels, with the goal of assessing the trade-off between depth, recognition performance, and computational efficiency. We compare the proposed architectures against fully trained recurrent and convolutional-recurrent baselines, namely Bidirectional Long Short-Term Memory networks (BiLSTMs) and Convolutional Recurrent Neural Networks (CRNNs). Results show that deep and shallow reservoir-based models achieve competitive recognition rates, with deeper variants being more robust in highly noisy conditions and shallower ones offering the most favorable efficiency profile, particularly on edge devices such as the NVIDIA Orin. In addition, the proposed approach remains robust across different input representations, including log-Mel spectrograms and MFCCs with varying resolutions. These findings highlight untrained reservoir architectures as a promising solution for resource-constrained audio surveillance scenarios.
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Machine Learning

Sequential Minimal Optimization Algorithm for One-Class Support Vector Machines With Privileged Information

One of the powerful techniques in data modeling is accounting for features that are available at the training stage, but are not available when the trained model is used to classify or predict test data – the Learning Using Privileged Information paradigm (LUPI). Sequential Minimal Optimization (SMO) methods have been developed for supervised Support Vector Machines (SVM), unsupervised one-class SVM, and SVM with privileged information (SVM+). The missing brick in this research has long been a one-class SVM with privileged information (OC-SVM+). In this paper, we propose an SMO algorithm for OC-SVM+ that significantly outperforms non-sequential algorithms for training the OC-SVM+ model. Its finite-time convergence is established. The experiments show how privileged information affects a descriptive domain in the space of original features. Comparative benchmark tests demonstrate that our algorithm is superior over interior point algorithms.
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Machine Learning

Neural Conjugate Aggregation: Identifiable Unsupervised Multi-Sensor Regression under Heterogeneous Sensor Bias

We study regression-based data fusion under uncertainty, where multiple noisy and biased measurement sources are available but ground-truth labels are absent during training. This setting arises in sensor networks, simulation ensembles, and scientific monitoring systems where supervision is costly or infeasible. We propose the Neural Conjugate Aggregation Model (NCAM), a hierarchical Bayesian framework that combines neural networks with conjugate Gaussian inference for unsupervised multi-source fusion. NCAM learns source-specific bias and reliability conditioned on contextual covariates, yielding an analytically tractable posterior over a latent target variable with decomposed epistemic and aleatoric uncertainty. Structural non-identifiability is resolved through sensor anchoring and variance regularization, enabling stable and interpretable posterior aggregation. To complement Bayesian uncertainty with finite-sample guarantees, we integrate locally adaptive Monte Carlo conformal prediction, producing heteroscedastic prediction intervals with coverage guarantees under exchangeability assumptions. Experiments on synthetic and real-world air-quality datasets demonstrate improved predictive accuracy and well-calibrated uncertainty compared to unsupervised baselines, including mean aggregation, probabilistic PCA, and Kalman filtering.
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All authors Muhammed Faruk Aytin, Zehra Demir, Alper Unal, Julian Marshall, Gozde Unal

Machine Learning

L20-Edu-135M: An Auditable Single-GPU Study of Data-Efficient Small Language Modeling

Small language models are cheap to serve and feasible on local hardware, but strong public 135M-class systems are commonly trained with hundreds of billions to trillions of tokens on large clusters. We study a sharply resource-constrained regime: a complete 134.5M-parameter language-model pipeline executed on one NVIDIA L20 GPU. The released checkpoint, L20-Edu-135M, receives approximately 13B pretraining tokens: 10B FineWeb-Edu tokens followed by a 3B-token educational, mathematics, code, and reasoning mixture. We document the architecture, data gates, cross-source MinHash/LSH near-deduplication, segment deduplication, benchmark-overlap removal, throughput optimization, supervised fine-tuning (SFT) with weight interpolation, and reinforcement learning from verifiable rewards (RLVR) on GSM8K. In a self-run zero-shot six-task harness, L20-Edu-135M obtains a mean score of 0.4150. It trails SmolLM-135M (0.4767) and SmolLM2-135M (0.4917), but its mean is 87.1% of SmolLM-135M's while its nominal token count is 2.17% as large. This ratio is descriptive, not evidence of statistical equivalence or a controlled scaling law. The model exceeds several older 100M-160M public baselines under the same harness. Direct GRPO-style RLVR decreases GSM8K exact-match accuracy from 1.82% to 1.59% (192-token completions) and 1.21% (320-token completions). These single-run results identify a concrete failure mode rather than establishing a general lower bound on RLVR. The contribution is an auditable resource-constrained case study, not a state-of-the-art claim.
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Machine Learning

Bayesian Adaptation Gym: A Benchmark for the Bayesian Low-Rank Adaptation of Multi-Modal Language Models

Large multi-modal language models are increasingly deployed in high-stakes domains, making well-calibrated uncertainty essential. Traditional Bayesian methods approximate posteriors over all model weights, which becomes intractable for modern large models. For this reason, recent work instead considers Bayesian low-rank adaptation to enable tractable posterior approximation. Due to a lack of a standardized benchmark to evaluate these approaches, it remains unclear where these methods provide meaningful benefits. To fill this gap, we introduce Bayesian Adaptation Gym (BAG), a benchmark for the Bayesian adaptation of multi-modal language models. BAG provides reference implementations of classic Bayesian baselines and state-of-the-art adaptation methods, along with a multi-modal dataset and task suite designed to probe calibration, robustness under distribution shift, and decision-making under uncertainty via active learning. Using BAG, we conduct and report extensive experiments across model sizes, datasets, and tasks to highlight the successes and failures of current Bayesian adaptation approaches. To enable further research, BAG is fully open source: https://github.com/SRI-CSL/BayesAdapt.
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All authors Colin Samplawski, Ramneet Kaur, Manoj Acharya, Anirban Roy, Adam D. Cobb

Machine Learning

Residue-Level Attributions in Protein Language Models Do Not Recover Allergen Epitopes

Deep allergenicity classifiers are increasingly used in safety screening of novel foods, and recent protein language models have substantially improved protein-level allergenicity prediction. However, whether their explanations capture biologically meaningful information remains unclear. We introduce an epitope-grounded residue-level benchmark for quantitatively evaluating attribution faithfulness in protein allergenicity models. Across frozen ESM-2, multi-task ESM-2, and DeepPlantAllergy, protein-level classification was robust, yet classification-head explanation signals did not significantly exceed random in their residue-level alignment with annotated epitopes across AUROC, AUPRC, and Precision@k. Integrated Gradients identified residues that were functionally important to the model, but not overlapping annotated epitopes. Saturation mutagenesis further suggested classifiers may rely on physicochemical and compositional sequence features rather than epitope-specific mechanisms. Residue-level importance signals should therefore not be interpreted as immunological explanations for safety screening or hypoallergen design without quantitative validation. Code available: https://github.com/Jeffateth/XAllergen2.0-paper
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All authors Jianzhou Yao, Anxiong Song, Katja Baerenfaller, Damir Zhakparov

Machine Learning · Cross-listed from cs.DC

FeLoG: Scalable and Efficient Distributed Graph Embedding with Feedback Loop Mechanism

Graph embedding maps graph nodes into low-dimensional vectors to support applications such as recommendation, fraud detection, and graph-based retrieval-augmented generation (GraphRAG). As graphs scale to billions of edges, scalable and efficient graph embedding has become increasingly important. Existing frameworks commonly adopt a sampling-training paradigm, in which mini-batches are constructed by sampling nodes and their neighbors. However, sampling is typically decoupled from evolving embedding quality, causing redundant exploration of well-trained regions while under-sampling undertrained nodes. At the system level, such decoupling further leads to excessive communication, serialized execution, and low resource utilization in distributed environments. We present FeLoG, a feedback loop-driven system for scalable distributed graph embedding. (1) FeLoG introduces feedback-coupled sampling and training, dynamically prioritizing undertrained nodes according to real-time embedding-quality feedback, thereby reducing redundant computation and accelerating convergence. (2) It employs activity-aware communication that compresses frequently occurring node sequences to reduce intra-machine PCIe traffic and selectively synchronizes frequently updated embeddings to reduce inter-machine communication. (3) It adopts a round-interleaved pipeline that overlaps next-round sampling with current-round training to improve CPU-GPU utilization. Experiments against six state-of-the-art baselines on large-scale graphs show that FeLoG achieves an average speedup of 27.9x, reduces communication cost by more than 53.1%, and sustains over 80% CPU-GPU utilization.
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All authors Peng Fang, Arijit Khan, Ziqiang Wu, Zhenli Li, Yibo Zhou, Fang Wang, Dan Feng

Machine Learning · Cross-listed from eess.AS

How Well Do Self-Supervised Speech Models Encode Age and Gender in Children's Speech? A Layer-Wise Analysis Across Multiple Architectures

Self-supervised learning (SSL) models have become a central component of modern speech processing systems, as they enable the learning of rich acoustic representations without reliance on labeled data. Despite their success on adult speech, it remains unclear how effectively these models capture speaker-related attributes such as age and gender in children's speech, which differs substantially from adult speech due to ongoing physiological and cognitive development. Higher pitch, increased articulatory variability, and age-dependent acoustic changes make children's speech a particularly challenging domain. In this work, we present a comprehensive analysis of how age and gender information is encoded across layers of four widely used SSL models: Wav2Vec2, HuBERT, Data2Vec, and WavLM. Layer-wise features are extracted and evaluated using a lightweight CNN on two benchmark children's speech corpora, PFSTAR and CMU Kids. To analyze feature compactness and redundancy, PCA is applied to identify redundancy and highlight the dimensions that contribute most to classification performance. Experimental results show that age- and gender-related information is unevenly distributed across SSL layers, with early to mid-level layers encoding the strongest paralinguistic cues. HuBERT achieves the best overall performance for age classification, while Wav2Vec2 and HuBERT lead gender classification on PFSTAR and CMU Kids, respectively. Beyond single-split evaluation, we further demonstrate that these findings remain stable under speaker-wise cross-validation, layer aggregation, and cross-database evaluation, indicating robustness to data imbalance and domain mismatch. Finally, we show that reliable age and gender classification is achievable even from short speech segments of 1–3 seconds.
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All authors Abhijit Sinha, Hemant Kumar Kathania, Mohit Joshi, Harishankar Kumar, Shrikanth Narayanan, Sudarsana Reddy Kadiri

Machine Learning

Gated MLPs as Symmetry-Broken Rank-1 Bilinear Attention

We show that the conventional gated MLP can be viewed as a rank-1 approximation to a bilinear attention mechanism with two distinct factors corresponding to the query and the key. We further show that moving the nonlinearity onto one factor breaks the exchange symmetry between the two factors and, for non-homogeneous activations, the inverse-scaling symmetry as well. This perspective may help explain why gated MLPs are effective in practice and inform the design of future architectures.
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Machine Learning

Beyond Time Series: Spatial Reasoning for Epidemic Forecasting via Multimodal Learning

Epidemic forecasting models typically rely on surveillance data reported over administrative regions, treating them as atomic units, thereby obscuring sub-regional spatial structure that shapes disease dynamics. We introduce a spatially structured multimodal epidemic forecasting setting that integrates region-level temporal surveillance data with spatially localized auxiliary signals that are misaligned in resolution and structure, reflecting realistic public health reporting constraints. Building on this formulation, we propose M-SPICE (Multimodal SPatIal Context for Epidemic Forecasting), a structure-aware spatiotemporal forecasting framework that performs joint reasoning over temporal disease dynamics and spatial context via attention-based multimodal fusion, allowing spatial signals to selectively condition temporal representations across forecast horizons. We evaluate our approach on real-world COVID-19, influenza, and influenza-like illness (ILI) forecasting tasks under realistic real-time evaluation protocols. Across all forecasting settings, our method consistently outperforms state-of-the-art multivariate time-series, multimodal, and epidemiological forecasting baselines while maintaining strong probabilistic forecasting performance. Finally, interpretability analyses reveal when, where, and how spatial signals are leveraged, highlighting settings in which purely temporal, region-aggregated models are most likely to fail.
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All authors Diana Guadalupe Gomez, Chenwei Wu, Zhiyi Wang, Liyue Shen, Alexander Rodríguez

Machine Learning

Early-Exit Graph Neural Networks for Link Prediction

Graph Neural Networks are great for link prediction in various network-like structures; however, the question of their speed/quality tradeoff has been barely studied. While in practice the time it takes to do inference matters little for small benchmarks, the latency does limit applicability in large-scale domains. In this work, we explore early-exiting strategies that can be applied to Graph Neural Networks to solve the problem of link-prediction faster. We use no auxiliary losses to enforce early exiting, allowing it to emerge as an implicit property of the architecture. We show that our method enables early exiting in several setups, moving the Pareto frontier on the HeaRT benchmark for GCN and SAS-GNN backbones. Our findings show that inference speed of GNNs on many link-prediction problems can be improved, while losing little, or even winning in terms of prediction quality. The code is available in our repository: https://github.com/knyazer/link_prediction.
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Machine Learning · Cross-listed from cs.DL

Rebuttals Move Peer-Review Scores, but Initial-Review Structure Bounds the Movement

Author rebuttals are the main post-submission window in peer review, but their effect on reviewer scores remains hard to measure because score updates mix rebuttal content with initial score position, paper-level consensus, reviewer confidence, and discussion dynamics. We study ICLR 2024-2025 using 73,000 reviewer trajectories with externally archived pre- and post-rebuttal scores, and use LLMs only as measurement instruments. Gemini Flash 3.0 predicts implied pre-rebuttal scores from score-stripped review text. The resulting text-score offset predicts later movement, with score-increase rates rising from 8.3% when text reads below the assigned score to 31.9% when it reads above. Claude Opus 4.6 induces, and outcome-blinded Gemini Flash 3.0 validates, a 44-feature taxonomy of resolved reviewer-author exchanges, where 23 features replicate across model and held-out year under Bonferroni correction. In the rebuttal-engaged benchmark (n=6,705), initial-review structure already predicts much score movement (AUC=0.747, minimal AUC=0.696), while adding the resolved exchange raises AUC to 0.804. Rebuttals can move scores, but measurable movement is bounded by initial-review structure, and robust exchange signals are mostly rebuttal failure modes.
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All authors Mathieu Louis, Tibo Vanleke, Vincent Ginis, Andres Algaba

Machine Learning

Drowning in Routine: Signal Dilution in Multi-Turn Agent Training

Multi-turn agents interleave consequential decisions with routine execution: some actions change the downstream return distribution, while others are necessary but reward-equivalent. The cost of trajectory-level credit assignment, often attributed to long horizons, is in fact governed by decision density $\rho$: the fraction of turns whose actions affect the return. When decision density is low, routine turns create signal dilution: they add gradient variance to trajectory-level estimators such as GRPO without adding expected signal. Under explicit assumptions, the resulting turn-level to trajectory-level signal-to-noise ratio scales as $\rho^{-1/2}$, provided critic error remains controlled. The same analysis identifies the complementary regime: at high decision density, trajectory-level methods can remain competitive while avoiding the cost of a critic. In a controlled environment where $\rho$ is exactly tunable, the predicted scaling is recovered with $R^2 = 0.999$, and the training-step gap widens significantly as $\rho \to 0$.
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Machine Learning · Cross-listed from astro-ph.IM

Deep RL for Fast Long-Horizon Operations Scheduling on NASA's Carruthers Geocorona Observatory Mission

Spacecraft operations scheduling is a highly constrained, long-horizon combinatorial optimization problem that traditionally relies on heuristics, constraint programming, or manual planning. We present a scalable deep reinforcement learning framework developed and deployed for NASA's Carruthers Geocorona Observatory mission. Our framework introduces a macro-action abstraction known as activity blocks coupled with dynamic action-masking to navigate the intractably large search space and strictly enforce complex power, thermal, and instrument constraints. The resulting architecture generates globally feasible schedules with overwhelming probability, establishes operational trust, and executes a full training cycle in under six hours, circumventing the need for policy robustness by enabling rapid, on-demand retraining. Further, resulting schedules outperform baseline heuristics in scheduled science quality. The deep reinforcement learning framework was deployed as the default operational scheduler for the Carruthers Geocorona Observatory mission from the outset of the mission, demonstrating that deep reinforcement learning can be trusted for real spacecraft operations under complex, evolving constraints.
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Machine Learning

Parameterized Representations via Implicit Stochastic Modulation for High-Dimensional and High-Order Neural PDE Solvers

Solving high-dimensional and high-order PDEs is challenged by the coupled growth of spatial dimensionality and derivative order. Recent stochastic derivative estimators reduce this cost by replacing full derivative tensors with randomized dimension or Taylor estimators, but they are mostly designed for fixed physical parameters and require retraining for each new parameter. We show that direct conditional parameterization of such solvers entangles physical parameters with the high-order automatic differentiation graph, causing extra memory growth and parameter-induced variance amplification. We propose Parameterized Representations via Implicit Stochastic Modulation (PRISM), a plug-and-play framework for parameterized high-dimensional and high-order stochastic neural PDE solvers. PRISM uses a hyper-generator to map physical parameters to affine modulators that scale and shift a purely spatial latent manifold, while keeping parameter branches value-connected but spatial-tangent-disconnected. This design preserves unbiased stochastic dimension and Taylor estimators, removes the parameter encoder from high-order spatial AD, and provides a variance-aware Lipschitz envelope over the parameter space. We prove parameterized unbiasedness, estimation-error bounds, and convergence under bounded stochastic variance. Experiments with PRISM-STDE and PRISM-SDGD on nonlinear parameterized PDEs show stable zero-shot generalization, reduced memory usage, and scalability up to 100,000 dimensions on a single GPU, with efficient low-rank SVD adaptation for unseen parameters.
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Machine Learning

Meta-Reinforcement Learning via Evolution for Multi-Objective Combinatorial Supply Chain Optimisation

Meta-reinforcement learning is a promising approach to multi-objective optimisation because it enables rapid policy adaptation across changing environments and preference settings. However, conventional few-shot methods usually fine-tune from a single shared meta-policy, which can reduce solution diversity and limit exploration of the Pareto front, especially in high-dimensional combinatorial problems such as supply chain optimisation. We propose a population-based Meta-reinforcement learning framework that combines decomposition with evolutionary search in scalarisation weight space. The framework maintains a population of weight vectors, each associated with a distinct meta-policy trained through gradient-based meta-learning, and iteratively refines this population through elitist selection, crossover, and mutation guided by hypervolume and entropy contributions. We evaluate the method in a multi-objective supply chain setting with conflicting economic, environmental, and social goals, and further test its generality on standard reinforcement learning problems. The results show that the proposed approach yields more diverse, better distributed Pareto front approximations, improves cross-task adaptation, increases hypervolume by up to 32% over Meta-multi-objective reinforcement learning in the complex case, and attains the lowest average Hausdorff distance among all compared methods.
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All authors Rifny Rachman, Bahrul Ilmi Nasution, Josh Tingey, Richard Allmendinger, Pradyumn Shukla, Wei Pan

Machine Learning · Cross-listed from cs.RO

Physics-Informed Eikonal Caging for Whole-Arm Manipulation Planning

Planning contact-rich whole-arm manipulation is challenging because interactions that involve extended robot geometry give rise to complex contact dynamics that are difficult to model accurately. This creates a need for planning principles that do not rely heavily on precise contact models. Caging offers one such geometric notion of robustness to modeling inaccuracy by restricting object escape through geometrically enclosing the object. However, existing caging formulations are difficult to incorporate into continuous optimization-based manipulation planning. We reformulate caging as a minimum-time escape problem in which the object seeks to leave an enclosing robot geometry in the shortest time. This yields a continuous escape-time field that measures the robot's enclosure quality and we show it satisfies an eikonal equation. We therefore can approximate this field using a physics-informed neural network, producing a smooth differentiable representation that can be embedded directly into manipulation planning. The resulting objective supports whole-arm manipulation planning to favor robot configurations resisting object escape. This improves the manipulation robustness to contact model mismatch, thus enabling planning with simplified contact models, including quasi-dynamic approximations and simplified object geometry. Across simulation and real-world experiments, we show improved robustness to disturbances and contact-model mismatch relative to baselines. These results suggest that geometric enclosure can serve as a practical robustness primitive for whole-arm manipulation. A supplementary video, which includes an intuitive overview of our method and experiment video results, is available on our project webpage.
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All authors Yan Zhang, Yiming Li, Yifei Dong, Florian T. Pokorny, Sylvain Calinon

Machine Learning · Cross-listed from cs.CL

BioMatrix: Towards a Comprehensive Biological Foundation Model Spanning the Modality Matrix of Sequences, Structures, and Language

We present BioMatrix, the first multimodal foundation model that natively integrates sequences, structures, and natural language for both molecules and proteins within a single decoder-only architecture. Existing biological foundation models pursue native multimodality and broad entity coverage separately: those that fuse multiple modalities under a shared objective remain confined to a single entity type, while those spanning multiple entity types either omit explicit structural modeling or rely on adapter-based designs in which the model cannot natively generate the very modalities it can read. BioMatrix closes this gap by mapping molecular sequences (supporting both SMILES and SELFIES notations), molecular structures, protein sequences, protein structures, and natural language into a shared discrete token space through a unified tokenization scheme, so that all modalities are consumed and produced uniformly under a single next-token prediction objective – without external encoders, projection adapters, or modality-specific output heads. Built upon the Qwen3 language model (1.7B and 4B), BioMatrix is continually pretrained on 304.4 billion tokens spanning general and domain-specific text, sequence and structure views of molecules and proteins, and cross-modal corpora that interleave biomolecular entities with scientific text and link distinct entities through molecule-protein and protein-protein interaction data. After tuning on a comprehensive suite of downstream applications covering 80 tasks across 6 categories – encompassing single-entity and multi-entity understanding and generation tasks across and within modalities – BioMatrix achieves state-of-the-art or competitive performance on 77 out of 80 tasks, demonstrating that a single, natively multimodal generalist model can effectively match or surpass specialized approaches across a wide range of biological tasks.
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All authors Qizhi Pei, Zhimeng Zhou, Yi Duan, Yiyang Zhao, Wei Li, Han Guo, Liang He, Chengping Li, Chang-Yu Hsieh, Conghui He, Rui Yan, Lijun Wu

Machine Learning · Cross-listed from cs.CV

Accurate identification and measurement of the precipitate area by two-stage deep neural networks in novel chromium-based alloys

The performance of advanced materials for extreme environments is underpinned by their microstructure, including the size and distribution of reinforcing phases. Chromium-based superalloys are a recently proposed alternative to conventional face-centred-cubic superalloys for high-temperature applications, such as Concentrated Solar Power, and their development requires efficient measurement of precipitate volume fraction and size distribution from electron microscopy images. Traditional fixed-threshold image processing is sensitive to background noise, generalises poorly across materials, and requires substantial manual measurement effort. To address these bottlenecks, this study proposes DT-SegNet, an end-to-end two-stage deep learning scheme based on YOLOv5 and SegFormer for object detection and segmentation in electron microscopy images. The approach combines the training efficiency of convolutional neural networks at the detection stage with the segmentation accuracy of a Vision Transformer. Numerical experiments show that DT-SegNet substantially outperforms state-of-the-art segmentation tools offered by Weka and ilastik across metrics including accuracy, precision, recall, and F1-score. The model provides a useful tool for alloy-development microstructure examinations and helps address the large datasets associated with high-throughput alloy development.
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All authors Zeyu Xia, Kan Ma, Sibo Cheng, Thomas Blackburn, Ziling Peng, Kewei Zhu, Weihang Zhang, Dunhui Xiao, Alexander J Knowles, Rossella Arcucci

Machine Learning · Cross-listed from eess.SY

Reinforcement Learning-Based Traffic Signal Control for IoT-Enabled Intersections

Urban traffic congestion remains a persistent challenge in car-dependent cities, imposing significant economic and societal costs. Traffic signal systems are increasingly deployed as networked cyber-physical components within smart-city infrastructures, where distributed sensing and edge intelligence enable adaptive traffic management. This paper investigates reinforcement learning (RL) as an edge-intelligent approach for adaptive traffic signal operation at a signalized urban intersection in Kuwait. A Proximal Policy Optimization (PPO)-based controller is developed to dynamically allocate green-phase durations using locally observed traffic states, without relying on future demand information or centralized coordination. The controller is evaluated in a realistic simulation environment informed by real-world hourly traffic volume data from Kuwait, and is compared against both conventional fixed-time control and a vehicle-actuated controller representing the current state of practice, using average vehicle delay, queue length, and emissions as performance metrics. Under nominal conditions, the proposed controller reduces average vehicle delay by 46% relative to fixed-time control and 34% relative to actuated control, while also lowering per-vehicle CO2 emissions by approximately 23%. These performance gains persist under demand perturbations of +/-15%, generalize from weekday to weekend traffic patterns, and are corroborated by a reward function ablation; low variance across five random seeds confirms their statistical reliability. These findings demonstrate the practicality of learning-based edge traffic signal control as a building block for IoT-enabled smart-city transportation systems, and as a deployable precursor toward fully connected, Internet of Vehicles (IoV)-based urban mobility.
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Machine Learning

OphthaDT: Generative Digital Twins for Forecasting Visual Acuity Trajectories in Ophthalmology

Precision medicine in ophthalmology requires accurate longitudinal predictions, but the fragmented nature of multimodal clinical data remains a barrier to forecasting. We introduce OphthaDT, an LLM-based digital twin for ophthalmology that serializes longitudinal patient histories from 3,220 patients across four Phase III clinical trials into structured narratives to forecast best corrected visual acuity (BCVA). In benchmarks spanning up to 100 weeks, OphthaDT demonstrated the lowest prediction error in neovascular age-related macular degeneration (nAMD), achieving an average mean absolute error (MAE) reduction of 6.0% compared to all baselines. In diabetic macular edema (DME), OphthaDT demonstrated competitive performance against all baselines while outperforming Random Forest and XGBoost by an average MAE reduction of 2.6% and 6.9%, respectively. Results reveal that OphthaDT's predictive advantage scales with trajectory complexity: whereas linear models remain effective for the more stable treatment responses of DME, OphthaDT's capacity is better suited for capturing the high longitudinal variability of nAMD. Finally, OphthaDT handles irregular sampling without imputation, positioning LLM-based clinical trajectory modeling as a methodology that could reduce patient burden and accelerate drug development.
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All authors Pietro Belligoli, Nikita Makarov, Sayedali Shetab Boushehri, Fabian Schmich, Raul Rodriguez-Esteban, Michael Menden

Machine Learning · Cross-listed from cs.AI

Can Reasoning Models Detect Changes to their Chains of Thought?

There are many reasons one may want to edit a model's chain of thought (CoT) – e.g., to prefill it with reasoning from a stronger model or to remove steps that may yield unsafe outputs. The success of these interventions plausibly depends on a model's inability to notice them, as the model may alter its behavior if it suspects tampering. In this work, we study whether recent reasoning models are able to detect such interventions on their CoTs under a variety of conditions: both during reasoning and after it, and when prefilled both with their own CoTs and with those of other models. Broadly, we find that (i) models exhibit only very modest detection accuracy; (ii) models struggle to identify *how* their CoT was modified; and (iii) models are about as good at detecting changes to their own CoTs as to those of other models.
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All authors Sathvik Napa, Utkarsh Singh, Chengyuan Xue, Miriam Wanner, William Walden

Machine Learning · Cross-listed from physics.flu-dyn

Patched Flow Matching: Generative Wall-Pressure Reconstruction Beyond Training-Domain Scales from Sparse Sensors

Characterizing the complete wall-pressure spectrum in turbulent wall-bounded flows requires simultaneous access to the viscous-scale high-wavenumber content and the outer-layer low-wavenumber content – a requirement that neither short-domain direct numerical simulation (DNS) nor sparse experimental measurements alone can satisfy. We propose Patched Flow Matching (Patched FM), a generative framework that fuses these two complementary sources by learning a patch-local prior over inner-scaled wall-pressure statistics from short-domain DNS and assimilating sparse sensor measurements at inference time through training-free posterior sampling. The patch-additive decomposition of the flow matching vector field decouples the generative prior from the global domain size, enabling reconstruction on domains arbitrarily larger than the training configuration. By expressing the patch prior in inner-scaled coordinates, where high-wavenumber wall-pressure statistics are approximately Reynolds-number invariant, the framework extends to higher Reynolds numbers through hierarchical transfer learning with as few as $500$ short-domain snapshots ($2.5\%$ of the base training data) at a fraction of the scratch-training cost. Applied to compressible channel-flow DNS at $Re_\tau = 180$, $500$, and $1000$, Patched FM reconstructs full-resolution wall-pressure fields on a domain four times larger than the training configuration ($L_x^L = 16\pi\delta$ versus $L_x^S = 4\pi\delta$) from sensor coverage as low as $0.25\%$, recovering the low-wavenumber spectral content inaccessible to short-domain DNS with high fidelity in both streamwise and spanwise directions. Zero-shot generalization to unseen Reynolds numbers and ablation studies further confirm the role of inner scaling as a physical prerequisite for data-efficient Reynolds-number transfer.
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Machine Learning · Cross-listed from cs.CL

Where Does the Signal Live? A Web Data Recipe for Medical Encoder Pretraining

Web data curation has been widely studied for decoder Large Language Model (LLM) pretraining. Encoders for dense-terminology domains such as medicine, by contrast, are pretrained on small, manually-curated corpora that limit scalability and writing style diversity, a bottleneck even more severe in non-English clinical settings. Whether web-scale data curation also benefits encoder Masked Language Modeling (MLM) in a dense-terminology domain remains an open question. To address this, we introduce two complementary levers. Medical-term density filtering selects documents rich in medical terms. Signal-amplifying rephrasing uses an LLM to rewrite documents into denser variants with broader entity contexts. We instantiate the recipe on French medical NLP. The medical-term density filter outperforms the widely-used educational quality filter on downstream medical tasks, and the two complement each other. Signal-amplifying rephrasing alone improves on raw web data, and mixing it with filtered web data produces the largest gain. The recipe yields FineMed, a French medical pretraining corpus, and DoctoBERT, a state-of-the-art French medical encoder family evaluated on both the public benchmark DrBenchmark and a proprietary clinical Named Entity Recognition (NER) task.
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All authors Bofeng Huang, Jacques Sun, Diane Bouchacourt, Nicolas Barascud, Fajwel Fogel

Machine Learning

Frequency-Domain Neural ODEs for Modeling Non-Linear Dynamical Systems

Standard continuous-depth models, such as Neural Ordinary Differential Equations (NODEs), offer significant advantages in modeling physical systems by learning continuous vector fields rather than discrete temporal steps. However, when applied to complex dynamical systems, standard NODEs frequently struggle with highly nonlinear dynamics. This paper investigates the Frequency-domain Neural ODE (FNODE), an architecture that projects continuous temporal dynamics into the frequency domain using the Fast Fourier Transform (FFT). By operating in the frequency domain, the model provides better generalization to the dynamical system. The architecture is empirically evaluated against discrete models, specifically Gated Recurrent Units (GRUs) and Long Short-Term Memory (LSTMs), and other continuous-depth variants, including Augmented Neural ODE (ANODE), across four distinct dynamical systems: the Lotka-Volterra model, the forced Duffing oscillator, the Van der Pol oscillator, and the Lorenz system. To rigorously assess generalization and robustness, curriculum and ensemble learning are used to evaluate the model's convergence by estimating confidence intervals across different ensemble models. The empirical results demonstrate that the FNODE architecture achieves better generalization while exhibiting remarkable convergence stability.
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