Machine Learning
Papers
Fresh from arXiv, typeset properly. Highlighted words trade on the market.
Friday 5 June
Traditional change point detection in dynamic networks assumes abrupt transitions between stationary states, overlooking scenarios of continuous evolution which arise in most real-world applications, such as social networks or physical systems. We address this gap by formally defining regimes as periods of coherent dynamics in temporal graphs, which we characterize as trajectories along geodesics in a suitably defined graph space. This original perspective allows us to define regime changes as significant drifts in dynamics, either toward new trajectories or with pace changes. We leverage graph regression methods to measure the cumulative distance of sequences of observed graphs from the estimated geodesics between their endpoints, in the relevant graph space, which we can combine with change point detection algorithms. We present experiments on dynamic networks, with changing trajectories and varying speeds, in which we outperform state of the art change point detection models. Then, we analyse mobility data during the Covid-19 pandemic, and show that our assumptions on regular network evolution lead to change points that are more aligned to external events compared to the outcomes of baseline methods. Our work is the first to model and detect changes between evolving regimes in graph space, providing a realistic and powerful tool for analyzing complex temporal graph data.
Machine Learning
Decision-Aware Evaluation of Physics-Informed Surrogates
Physics-informed machine learning is often assessed by curve error, although engineering use depends on downstream decisions: ranking candidates, avoiding infeasible designs and limiting regret. We introduce pinn-gym, an open benchmark for material-conditioned lattice design that couples a transparent reduced-order crush-and-impact oracle with five printable polymer cards, dimensionless force-response targets and a protocol spanning curve fidelity, physical admissibility, top-k retrieval and mass regret. Across per-material, pooled and cross-material settings, low nRMSE is frequently insufficient to identify useful design selections. Physics-informed losses alter trade-offs rather than monotonically improving all metrics, and dimensionless conditioning improves comparability without making transfer symmetric. The benchmark is not a certified material model; within the released oracle, candidate generator and material cards, pinn-gym provides a reproducible testbed for evaluating PIML surrogates as decision systems rather than curve predictors alone.
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Machine Learning
REMEDI: A Benchmark for Retention and Unlearning Evaluation in Multi-label Clinical Disease Inference
Language models trained for clinical disease inference are trained on patient data, which may include sensitive and private information, and data owners may request the removal of their data from a trained model due to privacy or copyright concerns. However, exactly unlearning patient-specific data is intractable, and retraining with minor data removal is resource-intensive. While there exists several machine unlearning methods that can be used, their utility is generally restricted to non-medical domains. Moreover, the existing benchmarks for evaluating such unlearning methods primarily utilize synthetically curated datasets, which are not truly representative of real-world systems. Hence, the effectiveness of these unlearning methods in the medical domain is largely unclear. To this end, we introduce REMEDI, an extensive benchmark for machine unlearning tailored to multi-label and multiclass clinical disease inference, where label correlations, longitudinal structure, and safety constraints make unlearning particularly challenging. Unlike the existing benchmarks, REMEDI considers: (1) a relevant application domain (medical), (2) comprehensive unlearning setups involving diverse sets of forget instances, (3) challenging unlearning scenarios including multi-label and multi-class classification tasks, and (4) evaluation metrics involving performance both in terms of utility and extent of unlearning achieved. REMEDI is developed using the MIMIC-III clinical database that contains comprehensive clinical data of patients. Experiments with existing unlearning methods indicate that there exists a trade-off between utility and unlearning performance. They are also largely unsuited to multi-label classification tasks. To facilitate reproducibility, we make our benchmark publicly available.
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Machine Learning
Explaining Unsupervised Disease Staging in Huntington's Disease: Insights into Model Representations and Clusters
Huntington's disease (HD) is a progressive neurodegenerative disorder that affects motor, cognitive, and behavioral functions, where accurate characterization of disease progression remains essential to improve patient outcome and quality of life. Unsupervised machine learning (ML) approaches have demonstrated the ability to uncover disease progression trajectories and meaningful latent stages from longitudinal data; however, their limited interpretability restricts clinical trust and translation. We extend a previously proposed ML-based disease staging framework by applying an explainability analysis to the extracted feature representations and discovered disease stages. Applied to the Enroll-HD dataset, we first project the learned representations into a lower-dimensional space to intuitively assess whether the resulting clusters align with the progression of established clinical measures. We then use saliency maps to identify the clinical features that most strongly contribute to the learned embeddings over time. Finally, we train a surrogate classifier and apply SHAP to quantify feature importance for cluster assignments and to analyze which clinical variables drive transitions between disease stages. The explainability analysis indicates that the learned embeddings capture clinically meaningful disease structure, aligning with established motor and functional severity scores and exhibiting progressive deterioration across clusters. Within this analysis, SHAP reveals a stratification of disease stages, ranging from early cognitive-motor impairment to severe functional dependency, consistent with known clinical progression patterns, while also highlighting intra-stage variability.
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Machine Learning
$\alpha$-PFN: Fast Entropy Search via In-Context Learning
Information-theoretic acquisition functions such as Entropy Search (ES) offer a principled exploration-exploitation framework for Bayesian optimization (BO). However, their practical implementation relies on complicated and slow approximations, i.e., a Monte Carlo estimation of the information gain. This complexity can introduce numerical errors and requires specialized, hand-crafted implementations. We propose a two-stage amortization strategy that learns to approximate entropy search-based acquisition functions using Prior-data Fitted Networks (PFNs) in a single forward pass. A first PFN is trained to be conditioned on information about the optima; second, the $\alpha$-PFN is trained to predict the expected information gain by training on information gains measured with the first PFN. The $\alpha$-PFN offers a flexible learned approximation, which replaces the complex heuristic approximations with a single forward pass per candidate, enabling rapid and extensible acquisition evaluation. Empirically, our approach is competitive with state-of-the-art entropy search implementations on synthetic and real-world benchmarks, while accelerating the different entropy search variants across all our experiments, with speed ups over 50x. Source code: https://github.com/automl/AlphaPFN.
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Machine Learning
A machine-learning-assisted progressive digit-randomness screening framework for detecting non-random patterns in raw numerical research data
Raw numerical datasets remain less systematically examined in integrity screening than images, plagiarism, or summary-statistic inconsistencies. We developed the Fabrication-risk Digit Randomness Screening model (FDRS), a statistical and machine-learning framework for detecting non-random digit-pattern irregularities in numerical research data. FDRS integrates single- and joint-decimal-digit tests, Cramer's V, entropy metrics, Kullback-Leibler divergence, digit-preference indices, progressive subsampling, and semi-supervised risk scoring. It was evaluated using an instrument-derived enzymatic absorbance dataset (RawData, n=253) and a blinded manually simulated irregular dataset (ErrData, n=255). RawData showed no significant deviation in single third-decimal-digit analysis, whereas ErrData showed a significant deviation. In joint third-fourth decimal digit analysis, ErrData showed higher Cramer's V, lower normalized entropy, higher KL divergence, and a more persistent progressive-subsampling deviation signal. In internal validation, Elastic-net Logistic Regression achieved the highest AUC (0.98395) and lowest Brier score (0.048439), while Random Forest achieved the highest accuracy (0.926667) and balanced accuracy (0.935). RawData received a low ensemble risk score of 0.124627 and was classified as Grade 0; ErrData received a score of 0.740760 and was classified as Grade 3. External real-world benchmarks supported graded risk stratification: three datasets without identified public post-publication concerns were classified as Grade 0 or 1, whereas two datasets from publicly questioned or institutionally handled articles were classified as Grade 2 or 3. FDRS can prioritize raw numerical datasets for further review by integrating interpretable statistical and machine-learning features. It is an auxiliary digit-structure screening tool, not standalone evidence of fabrication or misconduct.
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Machine Learning
Learning Explicit Behavioral Models with Adaptive Questions and World-Model Probes
Interactive agents trained only against task return can achieve high scores while failing to represent the mechanisms that make their actions succeed. This makes brittle behavior difficult to diagnose and limits adaptation when environment dynamics change. Existing LLM reflection and policy-code repair can revise behavior from failed trajectories, but questions and world-understanding tests are usually used only after training. We introduce an Explicit Symbolic Behavioral Model (ESBM), a trainable behavioral model that couples task performance with evidence-grounded question answering and executable mechanism prediction. An ESBM represents behavior through typed predicates, weighted rules, bounded options and mechanism memory; the mechanism layer predicts symbolic events, object changes, rewards and terminal consequences under action interventions. After each rollout, adaptive questions and active world-model probes convert score failures, QA errors and transition-prediction errors into constraints for local ESBM edits. Candidate models are selected by a multi-criterion rule that jointly evaluates task score, answerability and active world-model consistency. Under the tested Atari-style protocols, ESBM learns high-scoring policies while producing explicit answers and executable mechanism predictions, indicating that adaptive questions can serve as both training pressure and reusable benchmarks for mechanistic policy learning in this setting.
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Machine Learning
Beyond Linear and Overcomplete Regimes: A Mean-Field Analysis of Bottleneck Autoencoders
Autoencoders (AEs) learn low-dimensional representations by mapping data into a latent space while minimizing reconstruction error. Despite their empirical success, theoretical understanding remains limited and largely restricted to linear models or settings without a bottleneck. In this work, we study nonlinear AEs with a fixed finite-dimensional bottleneck in the mean-field (MF) regime. We derive explicit MF learning dynamics for both encoder and decoder, providing a tractable characterization of training in the nonlinear setting. We show that, over finite time horizons, the empirical risk of finite-width networks trained with stochastic gradient descent closely tracks the MF risk trajectory with high probability. At optimality, we further establish that the finite-width risk converges to the MF optimum, demonstrating that finite networks are sufficiently expressive to approximate the infinite-width solution.
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Machine Learning
OffQ: Taming Structured Outliers in LLM Quantization by Offsetting
Low-bit quantization has been widely adopted to accelerate the inference of large language models (LLMs) by significantly reducing computational cost and memory usage. However, activation outliers pose a major challenge to effective quantization, often leading to notable performance degradation. In this paper, we introduce OffQ, a method designed to mitigate activation outliers in low-bit quantization through a novel offsetting mechanism. Specifically, OffQ first identifies a low-dimensional outlier subspace in the activations using a proposed top-1 PCA, and then concentrates high-magnitude activations into 1 channel via rotation. OffQ then absorbs this concentrated outlier channel by converting its magnitude into a shared offset, thereby reducing the standard deviation of the activations. This offsetting strategy enables effective W4A4KV4 quantization of LLMs using deployment-friendly uniform-grid and uniform-precision quantization. Extensive experiments across diverse LLM architectures and benchmarks demonstrate that OffQ outperforms state-of-the-art baselines, consistently improving model accuracy while preserving low-bit efficiency.
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Machine Learning · Cross-listed from cs.CL
SigmaScale: LLM Compression with SVD-based Low-Rank Decomposition and Learned Scaling Matrices
We present SigmaScale, a method for learning auxiliary scaling matrices $S$ to aid truncated Singular Value Decomposition (SVD) based Large Language Model (LLM) compression. Instead of deriving scaling matrices analytically, SigmaScale optimizes two sets of vectors that define diagonal row and column scaling transformations under an activation-aware compression loss. We show that learned scaling lowers the effective intrinsic rank of weight matrices, as reflected by reductions in effective-rank entropy, and that this reduction is strongly correlated with compression loss. Experiments on Llama 3.1 8B Instruct and Qwen3-8B show that SigmaScale is competitive with closely related state-of-the-art SVD-based compression methods across perplexity and zero-shot benchmarks. By using learned activation-aware transformations, SigmaScale explores a more flexible route to low-rank LLM compression by adapting to the structure of individual model weights. The advantage observed in specific tasks makes our approach a valid option for applications requiring a reduced LLM-inference computing cost.
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Machine Learning
The discovery of the effects of women employment participation on the fertility of developing countries: A panel data approach
The fertility trend in developing countries has experienced a significant decline in the last few decades; at the same time, the role of women in the workplace has improved. To have a better insight of the causality of the rate of women participation in the labor market on the total fertility rate in developing world, this paper divides the dataset of 115 developing countries in the period of 1991-2018 into four continents group (Africa, North/South America, Asia/Pacific, Europe) and then applies a data-driven panel data econometric procedure to mitigate omitted bias. The results suggest that the fertility behaviors of women in the North/South America continents are influenced by their career choice; meanwhile in society of other regions, other factors might be more important to women when thinking of having children. In conclusion, policymakers can reference to the paper and formulate policies to have more incentives in making reproductive decisions and further research in the field needs to consider family policies and patrilocality of developing countries as important data.
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Machine Learning
Residual-Controlled Multiplier Learning for Stochastic Constrained Decision-Making
Stochastic constrained decision-making requires optimizing performance objectives while enforcing statistical requirements such as safety or fairness. However, standard primal–dual methods struggle to update multipliers robustly under stochastic mini-batch feedback, as the noise of mini-batch gradients and constraint estimates can be directly accumulated into the multiplier memory. To address this issue, we propose Residual-Controlled Multiplier Learning (RCML), which reformulates multiplier updating as projected-pressure feedback. The central idea is to decompose the projected multiplier into an effective pressure signal for primal descent and a pressure-memory residual for finite-gain multiplier tracking. To handle heterogeneous and noisy observations, we further augment this residual-integral backbone with modular stochastic stabilization components. For the convex-affine backbone, we establish finite-gain convergence, derive a stochastic residual bound under mini-batch feedback, and show that the residual feedback law admits a local KKT-residual interpretation near regular KKT points of nonconvex problems. Experiments across optimization, allocation, and fair-ranking tasks show that RCML improves feasibility control and multiplier stability while maintaining competitive objective performance. Code is released at https://anonymous.4open.science/r/RCML-3114/.
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Machine Learning · Cross-listed from cs.CV
An Adaptive Data cleaning Framework for Noisy Label Detection
Deep neural networks (DNNs) excel in computer vision tasks given large annotated datasets. In real-world applications, however, labels are often corrupted by ambiguity, human error, or dynamic environments. Over-parameterized DNNs easily memorize these noisy labels during training, degrading model accuracy and generalization. Existing data-cleaning and sample-selection strategies often rely on manually specified thresholds, prior knowledge of the noise ratio, or a single metric (either learning dynamics or geometric structure), making them unstable in complex data regimes. This paper proposes a self-adaptive data-cleaning framework that integrates local, global, and learning dynamics cues for robust noisy-label detection. Samples are mapped into a unified low-dimensional feature space through a modular feature concatenation paradigm. We provide two instantiations: a 2D metric integrating class-adaptive KNN-based local disagreement with k-means-based global centroid distance, and a 3D multi-metric that additionally incorporates a z-normalized score. Unlike conventional 1D Gaussian Mixture Models applied to a single scalar metric, our framework performs multi-metric clustering on the feature space to adaptively partition samples into clean-dominant and noise-dominant components without requiring manual thresholds or noise priors. Experiments on CIFAR-10, MNIST, and ImageNet-100 with 5% to 40% symmetric label noise show high recall across settings, including near-perfect recall (>=98%) on ImageNet-100 at 40% noise. Subsequent training yields accuracy gains across evaluated settings, especially under severe corruption on ImageNet-100. These findings suggest that multi-metric integration provides a threshold-free, practical, and low-tuning strategy for noisy label detection.
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Machine Learning
On the Geometry of On-Policy Distillation
On-policy distillation (OPD) is increasingly used to improve large language model reasoning, but its training dynamics remain poorly understood. We characterize the trajectory of OPD updates in parameter space and compare it with supervised fine-tuning (SFT) and reinforcement learning with verifiable rewards (RLVR). A suite of parameter-space diagnostics consistently places OPD in a relaxed off-principal regime: compared with SFT, its updates affect fewer weights and avoid principal directions more strongly, while compared with RLVR, they remain less tightly constrained. Beyond this static localization, OPD exhibits subspace locking: its cumulative updates rapidly enter a narrow low-dimensional channel. Constraining training to the update subspace formed early in training preserves OPD performance but substantially degrades SFT, indicating that the locked subspace is functionally sufficient for OPD. Control experiments further show that sparsifying the update tokens and shifting rollout generation off-policy preserve the rank dynamics, whereas mixing the OPD objective with RLVR changes them. Overall, these results suggest that OPD is not merely an intermediate point between SFT and RLVR, but induces its own update geometry in parameter space.
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Machine Learning
SlimSearcher: Training Efficiency-Aware Web Agents via Adaptive Reward Gating
Deep research agents have demonstrated remarkable capabilities in complex information-seeking tasks, yet this power comes at a steep computational cost. Driven by accuracy-focused training paradigms, current models adopt brute-force strategies characterized by blind tool dependency and performative reasoning-generating long, redundant trajectories that are far from necessary for resolving these tasks, leading to wasteful tool calls and excessive token consumption. To overcome this efficiency trap, we propose SlimSearcher, a principled framework that pushes the Pareto frontier between accuracy and computational cost across both Supervised Fine-Tuning (SFT) and Reinforcement Learning (RL). In the SFT stage, SlimSearcher employs Pareto-efficient filtration to distill trajectories that are both successful and economical, guiding the model toward inherently efficiency-aware search behaviors. During RL, we introduce Adaptive Reward Gating, a dynamic reward-shaping mechanism that evaluates relative tool and token efficiency within a sampled cohort. By cascading these adaptive efficiency metrics with a strict correctness gate, our approach effectively avoids the brevity bias associated with absolute penalties and mitigates reward hacking. Extensive experiments on long-horizon benchmarks, including GAIA, BrowseComp, and XBenchDeepSearch, demonstrate that SlimSearcher reduces average tool-call rounds by 17%-58% while maintaining or improving accuracy.
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Machine Learning
Bias in Filter Feature Selection Evaluation: A Meta-Analysis of Datasets, Baselines, and Experimental Design Choices
Background: Since 1990 many feature selection methods have been proposed across heterogeneous applications. To validate the usefulness of a new method, it needs to be compared against at least one baseline method from the existing literature on a feature selection task using at least one dataset. Recent developments in tabular Deep Learning (DL) and data valuation in Machine Learning (ML) suggest that the evaluation of new methods, algorithms, and models may be consciously or unconsciously biased. We hypothesise that a similar trend exists in feature selection (FS), particularly in filter feature selection (FFS). The aim of this study is therefore to examine FFS studies to identify factors that influence the evaluation and that might consist entry point for biases in order to recommend stronger principles for FFS evaluation. Methods: We analyse a sample of 28 high profile FFS studies published between 1994 and 2025. The analysis provides reflections on how to examine FFS studies, highlights lessons learned throughout the process, and gives five evidence-based recommendations for future FFS evaluation. Results: Multivariate Linear Regression analysis achieved a score of $R^2=0.33$. It means that 33% of the variance in the performance of new methods against chosen baselines (win rate) is explained by the number of datasets (#Datasets), the number of baselines (#Baselines), and the number of new methods (#NewMethods). Discussion: $R^2=0.33$ is considered medium explanation; which is promising given that this is the first such study. The medium explanation result is due to the fact that win rate is influenced by additional factors such as the maturity of the feature selection domain, the type of datasets and baselines, and the simplicity of the regression model used to explain the relationship.
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Machine Learning
Constructing VAE Latent Spaces with Prescribed Topology
Variational autoencoders (VAEs) learn low-dimensional latent representations of high-dimensional data. When the data lies on a manifold with non-Euclidean topology, the standard Gaussian prior introduces a topological mismatch that degrades reconstruction quality and prevents faithful representation. We present a constructive mathematical framework that resolves this mismatch for all manifolds that admit a product covering space. These are manifolds expressible as products of elementary factors (circles, intervals, or lines) or as quotients of such products by a finite symmetry group. The class includes cylinders, tori, Möbius strips, Klein bottles, and real projective spaces. Factorized distributions over the elementary factors yield product topologies with closed-form, decoupled KL divergences, so that each latent factor can be shaped independently while keeping training tractable. We catalogue reparametrizable encoder-prior pairs for periodic, bounded, and unbounded supports, and provide coordinate transformations that allow standard neural networks to output non-Euclidean parameters with smooth gradients. For quotient manifolds, the decoder receives group-invariant features of the covering-space coordinates, so that identified points produce identical outputs. Anchor constraints fix the coordinate system relative to the data or create soft topological holes. Experiments on synthetic manifolds and real-image datasets (rotated and cyclically shifted MNIST) confirm that a topology-matched prior aligns KL regularization with the data manifold. The resulting topology-aware models outperform the Gaussian baseline at all practically relevant regularization strengths. The code is available at https://github.com/JvHulst/VAE-Topology.
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Machine Learning · Cross-listed from cs.CL
TRACE: Trajectory Reasoning through Adaptive Cross-Step Evidence Aggregation for LLM Agents
Autonomous LLM agents can pursue hidden malicious objectives through sequences of individually benign actions, making sabotage difficult to detect using standard trajectory-level monitoring. Existing approaches either evaluate complete trajectories in a single pass or partition them into independently scored windows, limiting their ability to connect evidence across temporally distant actions. We propose TRACE, a monitoring framework for long-horizon LLM agent trajectories. TRACE operates through a TIJ (Triage-Inspect-Judge) loop that identifies high-signal regions, performs targeted inspection while maintaining accumulated evidence across reasoning steps, and synthesizes a trajectory-level verdict. We evaluate TRACE on ten task domains from SHADE-Arena against state-of-the-art baselines. TRACE achieves an aggregate F1 of 0.713 and recall of 0.844, with the largest gains on tasks requiring long-range evidence linking.
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Machine Learning · Cross-listed from cs.CV
TrioPose: Native Triple-Stream Diffusion Transformers for Pose-Guided Text-to-Image Generation
Pose-guided text-to-image generation often suffers from limb distortions and feature crosstalk in complex multi-person scenarios. While existing UNet-based adapters struggle with long-range spatial dependencies, emerging Multimodal Diffusion Transformers (MM-DiTs) offer superior global modeling. However, naive signal concatenation in MM-DiTs severely disrupts pre-trained latent distributions. To address this, we propose TrioPose, a native pose-driven framework built upon the SD3.5M architecture. Specifically, we introduce a Triple-Stream Pose-Aware DiT (TSPA-DiT) that treats pose as an independent modality. It employs layer-wise activation and zero-initialized dual-residual injection to smoothly enforce geometric constraints while preserving pre-trained latent stability. To resolve severe multi-instance occlusions, we design a Learnable Relational Bias Mask that categorizes topological connectivity into fine-grained physical states, mapping them into continuous attention soft constraints to effectively decouple inter-instance interference. Furthermore, a Pose-Guided Spatial Loss Weighting strategy modulates the native diffusion objective using heatmap-derived error maps, focusing anatomical supervision strictly on distortion-prone regions. Extensive experiments demonstrate that TrioPose achieves state-of-the-art performance across challenging benchmarks, including Human-Art, CrowdPose, and OCHuman. Notably, it attains an AP of $64.33$ on Human-Art, representing a $30\%$ improvement over prior arts, while setting new standards for visual fidelity and text-image semantic alignment in complex multi-human generation.
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Machine Learning
Hierarchical Forecast Reconciliation for Urban Rail Transit Demand Prediction under Operational Disruptions
Accurate and coherent passenger demand forecasting is essential for Urban Rail Transit (URT) operations. Passenger demand is hierarchical: origin–destination (OD) flows aggregate to station-level inflows and outflows through conservation constraints. However, independently generated station- and OD-level forecasts may violate these constraints and limit information sharing across levels. This paper develops a hierarchical forecast reconciliation framework for joint station- and OD-level demand prediction. A neural Fully Connected Reconciler (FCR) maps incoherent base forecasts to coherent predictions with exact structural consistency by construction. We benchmark FCR against classical and machine-learning reconciliation methods using one year of Rejsekort smart-card and Banedanmark operational data from a 12-station Copenhagen S-train subnetwork, covering one-step, multi-step, and disruption forecasting. We also compare against a matched-parameter multi-task station–OD baseline with a soft consistency penalty. Reconciliation improves aggregate OD accuracy while enforcing exact coherence. Under standard conditions, FCR is competitive with statistical methods, while an oracle experiment using observed station demand reduces OD MSE by about 34%. Under train delays and cancellations, reconciliation continues to improve OD accuracy, with FCR achieving larger reductions than MinT-Sample in disruption-affected subsets. Greater cross-level disagreement is associated with larger reconciliation gains, highlighting the value of hierarchical reconciliation under both regular and disrupted operations.
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Machine Learning · Cross-listed from cs.CV
STREAM: Stochastic Riemannian Flow Matching with Anisotropic Decoder for Digital Histopathology Image Generation
Synthetic histopathology image generation addresses patient-privacy concerns and the growing data demands of foundation models. Existing state-of-the-art histopathology generative models use pretrained Vision Foundation Models (VFMs) as conditioning signals. We show this yields conditioning-dominated diversity: on TCGA-BRCA, 62-75% of their output diversity is attributable to the conditioning signal rather than the learned latent space, while de novo synthesis still requires a VFM at inference. We instead use histopathology VFMs as the latent space itself: their patch tokens are $\ell_2$-normalized on the unit hypersphere $\mathcal{S}^{d-1}$ with strong angular dominance and intrinsic curvature, motivating a Riemannian formulation. We present STREAM, the first framework to apply Riemannian flow matching in the histopathology domain, in two stages: 1) a bridge-type stochastic perturbation that establishes per-token rectifiability on $\mathcal{S}^{d-1}$ for training a Diffusion Transformer, and 2) a novel decoder training design whose noise covariance is anisotropic in the left-singular basis of the per-token tangent-projected velocity-field Jacobian, spending a large robustness budget on its low-response directions and a small one on its high-response directions. Across TCGA-BRCA and TCGA-COADREAD, STREAM achieves state-of-the-art gFID and ranks first on nearly all histopathology-specific metrics as well. Code and a public gallery of generated images are available at https://chokevin8.github.io/STREAM-Patho/.
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Machine Learning
CF-JEPA: Mask-free forward prediction with asymmetric encoder utilization for time-series representation learning
Self-supervised learning (SSL) for time-series representation learning is dominated by two paradigms: contrastive methods, which face challenges in constructing positive or negative pairs, and masking-based methods, which disrupt the temporal continuity of time-series signals. Joint-Embedding Predictive Architecture (JEPA) offers a promising alternative by predicting in representation space rather than reconstructing raw inputs. However, existing time-series JEPA variants still rely on masking and therefore inherit its continuity problem. Crop-based Forward JEPA (CF-JEPA) is proposed as an innovative mask-free framework that replaces masking with multi-horizon forward prediction: random crops serve as context views, and short-, mid-, and long-horizon future representations are predicted in the forward temporal direction, directly leveraging the inherent temporal ordering of time-series data as a learning signal. A strong asymmetry is also identified between the online encoder and the exponential moving average (EMA) target encoder, both produced from a single training run: the online encoder develops higher-rank discriminative features, while the EMA target encoder develops smoother, lower-rank temporal features. Exploiting this asymmetry, classification is routed to the online encoder and forecasting or anomaly detection to the EMA target encoder, achieving a 27% reduction in multivariate forecasting mean squared error (MSE) at no additional training cost. Across 126 University of California, Riverside (UCR) and 26 University of East Anglia (UEA) classification datasets, eight electricity transformer temperature forecasting benchmarks, and Key Performance Indicator /Yahoo anomaly detection, CF-JEPA achieves the highest average accuracy and rank on UCR and UEA among self-supervised baselines and ranks second on univariate forecasting and k-nearest neighbors-scored anomaly detection.
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Machine Learning · Cross-listed from cs.SD
Phonetic Error Analysis of Raw Waveform Acoustic Models
We analyse error patterns of raw waveform acoustic models on TIMIT phone recognition beyond the overall phone error rate (PER). PER is decomposed across three broad phonetic class (BPC) categorisations, and confusion matrices are constructed from substitution errors. Our models combine parametric (SincNet, Sinc2Net) or non-parametric CNNs with Bidirectional LSTMs, achieving 13.9%/15.3% PER on Dev/Test, the best reported results for raw waveform models on TIMIT. Transfer learning from WSJ reduces PER to 11.3%/12.3%, surpassing the Filterbank baseline. Per-BPC analysis reveals that BLSTM layers benefit transition-dependent classes most, while WSJ transfer learning improves consonants roughly three times more than vowels. Confusion patterns are consistent across raw waveform and Filterbank systems, indicating that the dominant confusions reflect inherent phonetic similarities.
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Machine Learning
A Geometric View for Understanding Concept Learning and Neuron Interpretation in Sparse Autoencoders
We propose a unified mathematical framework for a geometric understanding of concept learning and neuron interpretation in sparse autoencoders (SAEs). While SAEs improve interpretability of neural networks by learning sparse feature representations, a principled definition of ”concept” and ”learning” remains unclear. We formalize concepts as sets of data points and cast concept learning as a set-alignment problem between human-defined and model-induced concepts. This formulation distinguishes three increasingly strong notions of learning – detection, separation, and approximation – and yields geometric conditions, error bounds, and capacity constraints for when concepts can be represented by individual neurons or multi-neuron units. It also provides a set-theoretic account for common SAE phenomena, including feature splitting, feature absorption, feature families, and hierarchical concepts. Finally, we connect concept learning and neuron interpretation through formal concept analysis, showing that the two directions need not agree and that their many-to-many structure can be organized by concept lattices. Experiments on synthetic data with ReLU and Top-$K$ SAEs illustrate the theory and reveal the effects of SAE size and sparsity on concept learning.
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Machine Learning
RASFT: Rollout-Adaptive Supervised Fine-Tuning for Reasoning
Supervised fine-tuning (SFT) is a prevailing method for adapting large language models to reasoning tasks by imitating offline expert demonstrations, often treating a single expert trajectory as the target behavior. However, reasoning is not simple path imitation: rigidly following one demonstrated solution may overfit to surface forms and suppress the model's own reasoning distribution. We propose Rollout-Adaptive Supervised Fine-Tuning (RASFT), a policy-aware SFT framework that calibrates expert supervision according to problem-level solvability estimated from verified on-policy rollouts. For each problem, RASFT strengthens expert guidance when the current policy struggles, while relaxing rigid imitation and incorporating correct self-generated trajectories when the model already exhibits reliable reasoning behavior. To preserve useful reasoning priors, RASFT further introduces a clipped inverse ratio between the frozen reference model and the current policy to constrain excessive policy drift. Experiments across multiple models on six mathematical reasoning benchmarks and two code reasoning benchmarks show that RASFT achieves better overall performance than SFT, SFT variants, and representative RL methods. The code is available at https://github.com/zjd1sq/RASFT.
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Machine Learning
Accelerating Reproducible Research in Synthetic EHR Generation
The generation of high-fidelity synthetic Electronic Health Records (EHR) is crucial for advancing medical research while preserving patient privacy. However, head-to-head comparison of existing generative models is hindered by disjointed codebases, incompatible data loaders, conflicting library dependencies, and inconsistent evaluation protocols. To address these gaps, we introduce a lightweight, end-to-end benchmarking framework for reproducible synthetic EHR evaluation, organized as a unified pipeline spanning data ingestion, standardized model training, and architecture-agnostic evaluation. Our current implementation targets the generation of longitudinal ICD diagnosis codes – the most commonly studied modality in this literature – and is built on the community-maintained PyHealth library. We reimplement and unify strong baselines (MedGAN, CorGAN, PromptEHR, HALO) under full ICD-9 vocabulary granularity, and add a lightweight GPT-2 baseline from the general-purpose sequence-modeling literature. We contribute a rigorous, architecture-agnostic privacy-utility evaluation suite that applies identically to GAN- and transformer-based generators, and report bootstrapped confidence intervals across all metrics. We further analyze the poor long-tailed performance of existing models and discuss the extensibility of our framework beyond diagnosis codes. By lowering the engineering barrier to running, extending, and evaluating under a single pipeline, we introduce a starting point for community-driven reproducibility and benchmarking synthetic EHR models.
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Machine Learning
Heterogeneous Effects of Green Finance on Urban Decarbonization: Evidence from 285 Cities in China
While green finance has become a key instrument for low-carbon city transitions, its actual decarbonization effects and transmission mechanisms remain unclear. This study employs econometric models and machine learning-based analysis to examine whether and how green finance reduces city-level carbon intensity. Results show that green finance significantly lowers carbon intensity, with green bonds and green investment having the strongest impacts and evident spatial spillovers. The effects vary by development level, being most pronounced in Fourth- and Fifth-tier cities. Mediation analysis reveals that green finance operates mainly through energy structure optimization, followed by industrial upgrading, foreign direct investment, and technological innovation. SHAP analysis confirms substantial differences across financial instruments, with green bonds, funds, and credit contributing most to decarbonization. Moreover, the marginal impact is stronger in cities with low technological capacity, high industrial dependency, and coal-based energy mixes. These findings provide theoretical support and policy guidance for building a multi-level, regionally differentiated green finance system to promote inclusive low-carbon transitions. Keywords: Green Finance; Carbon Intensity; Decarbonization Effect; Machine Learning; City
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Machine Learning
Accelerating Multi-Objective Bayesian Optimisation via Predictive-Gradient Catalysts
This paper presents a general acceleration mechanism for multi-objective Bayesian optimisation (MOBO) that leverages Gaussian process predictive gradients as auxiliary signals. Rather than replacing existing Pareto-compliant acquisition functions, the proposed approach augments them with local stationarity information derived from surrogate-derived gradients, enabling faster convergence toward the global Pareto set under limited evaluation budgets. Two catalyst instantiations are investigated: an adaptive Multiple-Gradient Descent Algorithm-Based Catalyst (MGDA) and a predefined-weight variant that enables focused exploration when budgets are tight. Experiments on the DTLZ benchmark suite (using 2 objectives and 10 decision variables) show that predictive gradient catalysis can deliver significant acceleration compared to other acquisition functions (EHVI, AugTch, tMPoI, SAF) when surrogates are accurate, particularly for stationary problems.
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Machine Learning
GenPO++: Generative Policy Optimization with Jacobian-free Likelihood Ratios
Generative policies provide expressive and multimodal action distributions, making them attractive for reinforcement learning (RL) in complex continuous-control tasks. Among them, flow-based policies are especially appealing because they generate actions through deterministic transport maps. However, applying such generative policies to likelihood-based on-policy learning remains limited by the difficulty of evaluating the probability of executed actions. Existing flow RL methods either replace the true action-density ratio with approximate surrogates, which can introduce biased updates, or recover exact likelihoods through dummy-action augmentation, which enlarges the policy space and increases computation. In this work, we propose GenPO++, a reversible generative policy optimization framework that uses history states as auxiliary memory in a high-order reversible ODE solver, yielding exact inversion without changing the original action dimension. The resulting generative policy map has a log-determinant determined only by fixed solver coefficients, enabling exact and Jacobian-free likelihood-ratio computation. This design preserves the expressiveness of generative flow policies while avoiding both action ratio bias and dummy-action overhead. We evaluate GenPO++ on large-scale simulated control, fine-tuning, and real-world robotic manipulation tasks, where it achieves competitive or superior performance over state-of-the-art on-policy RL methods, while improving training stability and computational efficiency.
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Machine Learning · Cross-listed from stat.ML
Deep Single-Index Fréchet Regression
Predicting outputs that are located in non-Euclidean spaces, such as probability distributions, networks, and symmetric positive-definite matrices, is becoming increasingly important in modern data analysis, particularly when inputs are high-dimensional. We propose DeSI (Deep Single-Index Fréchet Regression), a semiparametric framework for regression with metric space-valued outputs and multivariate inputs that assumes a single-index structure for the conditional Fréchet mean. DeSI estimates an interpretable index direction, which quantifies the relative importance of inputs, using a deep neural network, and performs Fréchet regression along the resulting one-dimensional index in the target metric space. This structure mitigates the curse of dimensionality while retaining interpretability, which stands in contrast to standard deep neural networks. We establish theoretical guarantees for DeSI, including uniform approximation and convergence rates, and demonstrate its strong predictive performance through simulations on distributions, networks, and symmetric positive-definite matrices, as well as an application to compositional mood data from New Jersey.