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Computer Science Machine Learning

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Thursday 23 April

Machine Learning

Avionic Main Fuel Pump Simulation and Fault-Diagnosis Benchmark

In many cyber-physical systems, especially in critical applications such as aeroplanes, data to train anomaly detection and diagnosis algorithms is lacking due to data protection issues and partial observability. To combat this inherent lack of data, we introduce a high-fidelity, physics-informed co-simulation of a common aircraft main-fuel-pump system modelled in MATLAB/Simulink Simscape Fluids. We also describe its generated time-series data with health and fault mode annotations. To show feasibility of our benchmark, we apply an unsupervised Recurrent Variational Autoencoder (RNN-VAE) for anomaly detection and a SOM-VAE for operating mode discretization, trained to separate healthy and faulty conditions.
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All authors Felix Leonhard Janzen, Lukas Moddemann, Alexander Diedrich, Oliver Niggemann

Machine Learning · Cross-listed from cs.IR

IntrAgent: An LLM Agent for Content-Grounded Information Retrieval through Literature Review

Scientific research relies on accurate information retrieval from literature to support analytical decisions. In this work, we introduce a new task, INformation reTRieval through literAture reVIEW (IntraView), which aims to automate fine-grained information retrieval faithfully grounded in the provided content in response to research-driven queries, and propose IntrAgent, an LLM-based agent that addresses this challenging task. In particular, IntrAgent is designed to mimic human behaviors when reading literature for information retrieval – identifying relevant sections and then iteratively extracting key details to refine the retrieved information. It follows a two-stage pipeline: a Section Ranking stage that prioritizes relevant literature sections through structural-knowledge-enabled reasoning, and an Iterative Reading stage that continuously extracts details and synthesizes them into concise, contextually grounded answers. To support rigorous evaluation, we introduce IntraBench, a new benchmark consisting of 315 test instances built from expert-authored questions paired with literature spanning five STEM domains. Across seven backbone LLMs, IntrAgent achieves on average 13.2% higher cross-domain accuracy than state-of-the-art RAG and research-agent baselines.
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All authors Fengbo Ma, Zixin Rao, Xiaoting Li, Zhetao Chen, Hongyue Sun, Yiping Zhao, Xianyan Chen, Zhen Xiang

Machine Learning

PermaFrost-Attack: Stealth Pretraining Seeding(SPS) for planting Logic Landmines During LLM Training

Aligned large language models (LLMs) remain vulnerable to adversarial manipulation, and their reliance on web-scale pretraining creates a subtle but consequential attack surface. We study Stealth Pretraining Seeding (SPS), a threat model in which adversaries distribute small amounts of poisoned content across stealth websites, increasing the likelihood that such material is absorbed into future training corpora derived from sources such as Common Crawl. Because each individual payload is tiny, diffuse, and superficially benign, the attack is difficult to detect during dataset construction or filtering. The result is a latent form of poisoning that remains largely invisible under standard evaluation, yet can later be activated by a precise trigger such as <00TRIGGER00>. We call this attack PermaFrost, reflecting its latent and reactivatable nature. We study it through PermaFrost-Attack, a controlled framework for latent conceptual poisoning, together with three geometric diagnostics: Thermodynamic Length, Spectral Curvature, and the Infection Traceback Graph. Across multiple model families and scales, we show that this controlled SPS proxy can induce persistent unsafe behavior that often remains hidden under standard evaluation. Our results identify SPS as a practical and underappreciated threat to future foundation models. This paper introduces a novel geometric diagnostic lens for systematically examining latent model behavior, providing a principled foundation for detecting, characterizing, and understanding vulnerabilities that may remain invisible under standard evaluation.
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All authors Harsh Kumar, Rahul Maity, Tanmay Joshi, Aman Chadha, Vinija Jain, Suranjana Trivedy, Amitava Das

Machine Learning

Do Not Imitate, Reinforce: Iterative Classification via Belief Refinement

Standard supervised classification trains models to imitate the exact labels provided by a perfect oracle. This imitation happens in a single pass, restricting the model to a fixed compute budget even when inputs vary in complexity. Moreover, the rigid training objective forces the model to express absolute certainty on its training data, resulting in overconfident predictions during evaluation. We propose Reinforced Iterative Classification (RIC), which replaces the imitative objective with Reinforcement Learning (RL). RIC deploys a recurrent agent that iteratively updates a predictive distribution over classes, receiving reward for stepwise improvement in prediction quality. The value function provides a natural halting criterion by estimating the remaining scope for improvement. We prove that the iterative formulation recovers the same optimal predictions as cross-entropy while yielding an anytime classifier. On image classification benchmarks, RIC matches the accuracy of supervised baselines with improved calibration and learns to allocate computation adaptively across inputs.
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All authors Mahdi Kallel, Johannes Tölle, Ahmed Hendawy, Carlo D'Eramo

Machine Learning · Cross-listed from cs.RO

Wiggle and Go! System Identification for Zero-Shot Dynamic Rope Manipulation

Many robotic tasks are unforgiving; a single mistake in a dynamic throw can lead to unacceptable delays or unrecoverable failure. We introduce Wiggle and Go!, a two-stage framework for zero-shot rope manipulation: a brief, safe wiggle action is observed to predict descriptive rope parameters, which then conditions a trajectory optimizer for zero-shot goal-conditioned execution. Unlike prior dynamic rope manipulation methods that require large real-world datasets or iterative real-world refinement, our identification module is task-agnostic, supporting diverse manipulation policies without retraining. We achieve a 3.55\,cm average accuracy on 3D target striking in real using rope system parameters in comparison to 15.29\,cm for uninformed baselines, and over 50% success on multi-objective lobbing and draping tasks. Predicted parameters transfer to unseen motions with 0.95 Pearson correlation between simulated and real rope dynamics, indicating that the identification module generalizes across the task corpus. Project website: https://wiggleandgo.github.io/
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All authors Arthur Jakobsson, Abhinav Mahajan, Karthik Pullalarevu, Krishna Suresh, Yunchao Yao, Yuemin Mao, Bardienus Duisterhof, Shahram Najam Syed, Jeffrey Ichnowski

Machine Learning

Assessing the impact of dimensionality reduction on clustering performance - a systematic study

Dimensionality reduction is a critical preprocessing step for clustering high-dimensional data, yet comprehensive evaluation of its impact across diverse methods and data types remains limited. In this study, we systematically assess the influence of five dimensionality reduction techniques - Principal Component Analysis (PCA), Kernel Principal Component Analysis (Kernel PCA), Variational Autoencoder (VAE), Isometric Mapping (Isomap), and Multidimensional Scaling (MDS) - on the performance of four popular clustering algorithms - k-means, Agglomerative Hierarchical Clustering (AHC), Gaussian Mixture Models (GMM), and Ordering Points to Identify the Clustering Structure (OPTICS). We evaluate clustering quality using the Adjusted Rand Index (ARI), comparing results without and with dimensionality reduction at different reduction levels recommended in the literature (i.e., k-1, where k is the number of clusters, and 25% and 50% of the original number of dimensions). Our findings underscore the importance of a careful selection of the dimensionality reduction technique and the dimensionality reduction level that should be tailored to intrinsic data geometry and clustering algorithm(s) under consideration.
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All authors Ousmane Assani Amate, Elyes Lounissi, Mohammadreza Bakhtyari, Émilie Roy, Roman Sarrazin-Gendron, Vladimir Makarenkov

Machine Learning · Cross-listed from cs.CR

Who Audits the Auditor? Tamper-Proof Fraud Detection with Blockchain-Anchored Explainable ML

In enterprise fraud detection, model accuracy alone is insufficient when insiders can tamper with audit logs or bypass approval workflows. Real-world incidents show that fraud often persists not because detection algorithms fail, but because the audit trail itself is controllable by privileged operators. This exposes a fundamental trust gap: *who audits the auditor?* We present a tamper-evident fraud detection system that anchors both ML predictions and workflow execution to an immutable blockchain ledger. Rather than using blockchain as passive storage, we enforce the entire approval process through smart contracts, ensuring that every transaction, prediction, and explanation is atomically recorded and cannot be retroactively modified. Our detection module achieves competitive accuracy (F1 = 0.895, PR-AUC = 0.974) while providing cryptographically verifiable decision trails that support regulatory auditability requirements (e.g., GDPR Article 22). System evaluation shows sub-25 ms inference latency and economically viable deployment on Layer-2 networks at under \$0.01 per transaction (validated against PolygonScan data), supporting enterprise-scale workloads of 10,000+ monthly payments.
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Machine Learning

Generating Synthetic Malware Samples Using Generative AI

Malware attacks have a significant negative impact on organizations of varied scales in the field of cybersecurity. Recently, malware researchers have increasingly turned to machine learning techniques to combat sophisticated obfuscation methods used in malware. However, collecting a diverse set of malware samples with various obfuscation techniques is challenging and often takes years, especially for newly developed malware. This issue is further compounded by a well-known limitation of machine learning models: their poor performance when training data is scarce. In this paper, we propose a new system for generating synthetic malware samples to augment imbalanced malware dataset. Our approach decomposes malware binary samples into mnemonic opcode sequences, leveraging natural language processing to extract contextual meaning behind malware opcode features to aid the learning of generative AI (GenAI) employed in this paper, Generative Adversarial Networks (GAN), Wasserstein Generative Adversarial Networks with Gradient Penalty (WGAN-GP), and a modified Diffusion model. The experiment results show that augmenting training data with Diffusion-based synthetic data significantly improves classification performance for minor classes by up to 60% on average. This enhancement ultimately leads to an overall malware classification performance of 96%, an 8% improvement. These findings demonstrate the high quality and fidelity of the synthetic data, its robustness, and its potential applications in malware analysis. Specifically, synthetic malware data proves effective in improving the classification of minor malware classes and detection rates, even though the size of known malware data is significantly small.
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All authors Tiffany Bao, Kylie Trousil, Quang Duy Tran, Fabio Di Troia, Younghee Park

Machine Learning

Removing Sandbagging in LLMs by Training with Weak Supervision

As AI systems begin to automate complex tasks, supervision increasingly relies on weaker models or limited human oversight that cannot fully verify output quality. A model more capable than its supervisors could exploit this gap through sandbagging, producing work that appears acceptable but falls short of its true abilities. Can training elicit a model's best work even without reliable verification? We study this using model organisms trained to sandbag, testing elicitation techniques on problem-solving math, graduate-level science, and competitive coding tasks. We find that training with weak supervision can reliably elicit sandbagging models when supervised fine-tuning (SFT) and reinforcement learning (RL) are combined: SFT on weak demonstrations breaks the sandbagging behavior, enabling RL to then fully elicit performance. Neither method succeeds reliably alone-RL without SFT almost always leads to reward hacking rather than genuine improvement, and SFT without RL fails to elicit full performance when the supervisor is much weaker than the untrusted model. Critically, this relies on training being indistinguishable from deployment; when models can distinguish between training and deployment, they can perform well during training while continuing to sandbag afterward. Our results provide initial evidence that training is a viable mitigation against sandbagging, while highlighting the importance of making training indistinguishable from deployment.
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All authors Emil Ryd, Henning Bartsch, Julian Stastny, Joe Benton, Vivek Hebbar

Machine Learning

Insect-inspired modular architectures as inductive biases for reinforcement learning

Most reinforcement-learning (RL) controllers used in continuous control are architecturally centralized: observations are compressed into a single latent state from which both value estimates and actions are produced. Biological control systems are often organized differently. Insects, in particular, coordinate navigation, heading stabilization, memory, and context-dependent action selection through distributed circuits rather than a single monolithic controller. Motivated by this contrast, we study an RL policy architecture that decomposes control into interacting modules for sensory encoding, heading representation, sparse associative memory, recurrent command generation, and local motor control, with a learned arbitration mechanism that allocates motor authority across modules. The model is evaluated on a two-dimensional navigation task that require simultaneous food seeking, obstacle avoidance, and predator escape. In a six-seed predator-navigation experiment trained with Proximal Policy Optimization (PPO) for 75 updates, the modular policy achieves the strongest final mean performance among the tested controllers, with final episodic return $-2798.8\pm964.4$ versus $-3778.0\pm628.1$ for a centralized gated recurrent unit (GRU) and $-4727.5\pm772.5$ for a centralized multilayer perceptron (MLP). The modular policy also attains the lowest final value loss and stable PPO optimization statistics while driving module-assignment entropy to $0.0457\pm0.0244$, indicating highly selective control allocation. These results suggest that distributed control can serve as a useful inductive bias for RL problems involving dynamically competing behavioral objectives.
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Machine Learning

PrivUn: Unveiling Latent Ripple Effects and Shallow Forgetting in Privacy Unlearning

Large language models (LLMs) often memorize private information during training, raising serious privacy concerns. While machine unlearning has emerged as a promising solution, its true effectiveness against privacy attacks remains unclear. To address this, we propose PrivUn, a new evaluation framework that systematically assesses unlearning robustness through three-tier attack scenarios: direct retrieval, in-context learning recovery, and fine-tuning restoration; combined with quantitative analysis using forgetting scores, association metrics, and forgetting depth assessment. Our study exposes significant weaknesses in current unlearning methods, revealing two key findings: 1) unlearning exhibits gradient-driven ripple effects: unlike traditional forgetting which follows semantic relations (e.g., knowledge graphs), privacy unlearning propagates across latent gradient-based associations; and 2) most methods suffer from shallow forgetting, failing to remove private information distributed across multiple deep model layers. To validate these insights, we explore two strategies: association-aware core-set selection that leverages gradient similarity, and multi-layer deep intervention through representational constraints. These strategies represent a paradigm shift from shallow forgetting to deep forgetting.
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All authors Xiaoyi Chen, Haoyuan Wang, Siyuan Tang, Sijia Liu, Liya Su, XiaoFeng Wang, Haixu Tang

Machine Learning

Reliability Auditing for Downstream LLM tasks in Psychiatry: LLM-Generated Hospitalization Risk Scores

Large language models (LLMs) are increasingly utilized in clinical reasoning and risk assessment. However, their interpretive reliability in critical and indeterminate domains such as psychiatry remains unclear. Prior work has identified algorithmic biases and prompt sensitivity in these systems, raising concerns about how contextual information may influence model outputs, but there remains no systematic way to assess these, especially in the psychiatric domain. We propose an approach for reliability auditing downstream LLM tasks by structuring evaluation around the impact of prompt design and the inclusion of medically insignificant inputs on predicted hospitalization risk scores, which is often the first downstream AI clinical-decision-making task. In our audit, a cohort of synthetic patient profiles (n = 50) is generated, each consisting of 15 clinically relevant features and up to 50 clinically insignificant features, across four prompt reframings (neutral, logical, human impact, clinical judgment). We audit four LLMs (Gemini 2.5 Flash, LLaMa 3.3 70b, Claude Sonnet 4.6, GPT-4o mini), and our results show that including medically insignificant variables resulted in a statistically significant increase in the absolute mean predicted hospitalization risk and output variability across all models and prompts, indicating reduced predictive stability as contextual noise increased. Clinically insignificant features had an effect on instability across many model-prompt conditions, and prompt variations independently affected the trajectory of instability in a model-dependent manner. These findings quantify how LLM-based psychiatric risk assessments are sensitive to non-clinical information, highlighting the need for systematic evaluations of attributional stability and uncertainty behavior like this before clinical deployments.
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Machine Learning · Cross-listed from cs.CL

Lightweight Retrieval-Augmented Generation and Large Language Model-Based Modeling for Scalable Patient-Trial Matching

Patient-trial matching requires reasoning over long, heterogeneous electronic health records (EHRs) and complex eligibility criteria, posing significant challenges for scalability, generalization, and computational efficiency. Existing approaches either rely on full-document processing with large language models (LLMs), which is computationally expensive, or use traditional machine learning methods that struggle to capture unstructured clinical narratives. In this work, we propose a lightweight framework that combines retrieval-augmented generation and large language model-based modeling for scalable patient-trial matching. The framework explicitly separates two key components: retrieval-augmented generation is used to identify clinically relevant segments from long EHRs, reducing input complexity, while large language models are used to encode these selected segments into informative representations. These representations are further refined through dimensionality reduction and modeled using lightweight predictors, enabling efficient and scalable downstream classification. We evaluate the proposed approach on multiple public benchmarks (n2c2, SIGIR, TREC 2021/2022) and a real-world multimodal dataset from Mayo Clinic (MCPMD). Results show that retrieval-based information selection significantly reduces computational burden while preserving clinically meaningful signals. We further demonstrate that frozen LLMs provide strong representations for structured clinical data, whereas fine-tuning is essential for modeling unstructured clinical narratives. Importantly, the proposed lightweight pipeline achieves performance comparable to end-to-end LLM approaches with substantially lower computational cost.
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All authors Xiaodi Li, Yang Xiao, Munhwan Lee, Konstantinos Leventakos, Young J. Juhn, David Jones, Terence T. Sio, Wei Liu, Maria Vassilaki, Nansu Zong

Machine Learning

Learning Coverage- and Power-Optimal Transmitter Placement from City Maps: A Comparative Study of Direct and Indirect Neural Approaches

Optimal wireless transmitter placement is a central task in radio-network planning, and exhaustive search becomes prohibitively expensive at scale. This paper studies the single-transmitter setting under a learned propagation model, enabling exhaustive per-pixel assessment at scale in a regime where measurement-based labeling is infeasible and ray-tracing-based labeling is computationally out of reach. We introduce a dataset of 167525 urban scenarios (RadioMapSeer-Deployment) with dual ground-truth labels for coverage-optimal and power-optimal transmitter locations. Benchmark analysis reveals an asymmetric coverage-power trade-off: coverage-optimal placement sacrifices 13.86% of received-power, whereas power-optimal placement sacrifices 5.50% of coverage; the best balanced placement lies at $\bar{d}=2.60$ from the ideal point (100%,100%). We evaluate two learning formulations: indirect heatmap-based models predicting received-power radio maps, and direct score-map models predicting the objective landscape over feasible transmitter locations. Within the heatmap family, discriminative models deliver one-shot predictions 1350-2400$\times$ faster than exhaustive search, while diffusion models additionally support multi-sample inference that improves single-objective performance and, by reusing the same sample pool under a balanced criterion, recovers strong balanced placements without explicit multi-objective training. Dual score-map strategies combining power and coverage score-maps match the exhaustive balanced optimum ($\bar{d}=2.60$) and remain close to it across smaller candidate budgets, at 14-22$\times$ speedups including the cost of evaluating shortlisted candidates. Dual score-map methods are strongest overall, whereas heatmap formulations remain attractive for their physically meaningful intermediate maps and, in the diffusion setting, for inference-time search.
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Machine Learning

LayerBoost: Layer-Aware Attention Reduction for Efficient LLMs

Transformers are mostly relying on softmax attention, which introduces quadratic complexity with respect to sequence length and remains a major bottleneck for efficient inference. Prior work on linear or hybrid attention typically replaces softmax attention uniformly across all layers, often leading to significant performance degradation or requiring extensive retraining to recover model quality. This work proposes LayerBoost, a layer-aware attention reduction method that selectively modifies the attention mechanism based on the sensitivity of individual transformer layers. It first performs a systematic sensitivity analysis on a pretrained model to identify layers that are critical for maintaining performance. Guided by this analysis, three distinct strategies can be applied: retaining standard softmax attention in highly sensitive layers, replacing it with linear sliding window attention in moderately sensitive layers, and removing attention entirely in layers that exhibit low sensitivity. To recover performance after these architectural modifications, we introduce a lightweight distillation-based healing phase requiring only 10M additional training tokens. LayerBoost reduces inference latency and improves throughput by up to 68% at high concurrency, while maintaining competitive model quality. It matches base model performance on several benchmarks, exhibits only minor degradations on others, and significantly outperforms state-of-the-art attention linearization methods. These efficiency gains make our method particularly well-suited for high-concurrency serving and hardware-constrained deployment scenarios, where inference cost and memory footprint are critical bottlenecks.
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All authors Mohamed Ali Souibgui, Jan Fostier, Rodrigo Abadía-Heredia, Bohdan Denysenko, Christian Marschke, Igor Peric

Machine Learning · Cross-listed from physics.soc-ph

Audio Video Verbal Analysis (AVVA) for Capturing Classroom Dialogues

Background: The classroom discourse analysis has been transformed by the growing use of audio-video multimodal data, which demands analytical methods that balance interpretive depth with computational scalability. Methods: This study introduces the Audio Video Verbal Analysis (AVVA) framework, adapted from the Verbal Analysis method to integrate qualitative interpretation with quantitative modelling. Unlike fully multimodal learning analytics approaches, AVVA focuses on verbatim transcripts with essential interactional modalities. Findings: The framework embeds triangulation as a core design strategy across ten methodological steps, strengthening validity and analytical rigour. A comprehensive validation scheme addresses fundamental challenges in temporal observational research: Phi Ceiling for low-frequency variables (via Base Rate Filtering), estimation uncertainty (via bootstrap confidence intervals), and the Modifiable Temporal Unit Problem, where measured associations depend on observational window size. Four-criterion stability assessment (sign consistency, confidence interval overlap, zero exclusion, magnitude stability) classifies variable pairs into interpretable patterns: grain-invariant, scale-specific, or multi-scale, etc. structures across temporal grain sizes. Its application to 23 hours of classroom recordings illustrates its practical viability and its potential to yield meaningful insights. Contribution: The framework thus provides a scalable pathway for transforming rich classroom discourse into analysable datasets.
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Machine Learning · Cross-listed from cs.CV

EgoMAGIC- An Egocentric Video Field Medicine Dataset for Training Perception Algorithms

This paper introduces EgoMAGIC (Medical Assistance, Guidance, Instruction, and Correction), an egocentric medical activity dataset collected as part of DARPA's Perceptually-enabled Task Guidance (PTG) program. This dataset comprises 3,355 videos of 50 medical tasks, with at least 50 labeled videos per task. The primary objective of the PTG program was to develop virtual assistants integrated into augmented reality headsets to assist users in performing complex tasks. To encourage exploration and research using this dataset, the medical training data has been released along with an action detection challenge focused on eight medical tasks. The majority of the videos were recorded using a head-mounted stereo camera with integrated audio. From this dataset, 40 YOLO models were trained using 1.95 million labels to detect 124 medical objects, providing a robust starting point for developers working on medical AI applications. In addition to introducing the dataset, this paper presents baseline results on action detection for the eight selected medical tasks across three models, with the best-performing method achieving average mAP 0.526. Although this paper primarily addresses action detection as the benchmark, the EgoMAGIC dataset is equally suitable for action recognition, object identification and detection, error detection, and other challenging computer vision tasks. The dataset is accessible via zenodo.org (DOI: 10.5281/zenodo.19239154).
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All authors Brian VanVoorst, Nicholas Walczak, Christopher Gilleo, Charles Meissner, Fabio Felix, Iran Roman, Bea Steers, Claudio Silva, Yuhan Shen, Zijia Lu, Shih-Po Lee, Ehsan Elhamifar

Machine Learning

LTBs-KAN: Linear-Time B-splines Kolmogorov-Arnold Networks

Kolmogorov-Arnold Networks (KANs) are a recent neural network architecture offering an alternative to Multilayer Perceptrons (MLPs) with improved explainability and expressibility. However, KANs are significantly slower than MLPs due to the recursive nature of B-spline function computations, limiting their application. This work addresses these issues by proposing a novel base-spline Linear-Time B-splines Kolmogorov-Arnold Network (LTBs-KAN) with linear complexity. Unlike previous methods that rely on the Boor-Mansfield-Cox spline algorithm or other computationally intensive mathematical functions, our approach significantly reduces the computational burden. Additionally, we further reduce model's parameter through product-of-sums matrix factorization in the forward pass without sacrificing performance. Experiments on MNIST, Fashion-MNIST and CIFAR-10 demonstrate that LTBs-KAN achieves good time complexity and parameter reduction, when used as building architectural blocks, compared to other KAN implementations.
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Machine Learning

Kernel Contracts: A Specification Language for ML Kernel Correctness Across Heterogeneous Silicon

Every ML kernel ships with an implicit contract about what it computes. People rarely write the contract down. When two kernels disagree – when a matmul on AMD produces a different gradient than the same matmul on NVIDIA, when a fused attention kernel silently downcasts an accumulator, when an out-of-bounds access returns zero on one stack and garbage on another – there is no formal artifact to arbitrate the dispute. Recent empirical work has measured the gap across silicon platforms, but none of it specifies the contract being violated. We present a specification language for kernel contracts. A contract has eight parts: identifier, scope, precondition, postcondition, tolerance, reference oracle, measurement protocol, and violation signature. We use it to state twelve contract classes covering precision, ordering, compiler-induced, and exceptional-value failure modes, each grounded in published empirical evidence. We require a three-state calibration: every contract must admit at least one reference-conforming implementation and at least one contract-violating implementation that passes basic functional tests. We apply the framework to three documented incidents – Huawei Ascend silent precision coercion, Sakana AI CUDA Engineer reward hacking, AMD out-of-bounds silent acceptance – and show that each informal diagnosis maps to a specific contract violation with a measurable signature. A kernel contract suite is a normative reference against which conformance can be graded, in the way that ISASecure grades industrial control systems against IEC 62443.
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Machine Learning

Mochi: Aligning Pre-training and Inference for Efficient Graph Foundation Models via Meta-Learning

We propose Mochi, a Graph Foundation Model that addresses task unification and training efficiency by adopting a meta-learning based training framework. Prior models pre-train with reconstruction-based objectives such as link prediction, and assume that the resulting representations can be aligned with downstream tasks through a separate unification step such as class prototypes. We demonstrate through synthetic and real-world experiments that this procedure, while simple and intuitive, has limitations that directly affect downstream task performance. To address these limitations, Mochi pre-trains on few-shot episodes that mirror the downstream evaluation protocol, aligning the training objective with inference rather than relying on a post-hoc unification step. We show that Mochi, along with its more powerful variant Mochi++, achieves competitive or superior performance compared to existing Graph Foundation Models across 25 real-world graph datasets spanning node classification, link prediction, and graph classification, while requiring 8$\sim$27 times less training time than the strongest baseline.
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Machine Learning · Cross-listed from cs.CL

Shared Lexical Task Representations Explain Behavioral Variability In LLMs

One of the most common complaints about large language models (LLMs) is their prompt sensitivity – that is, the fact that their ability to perform a task or provide a correct answer to a question can depend unpredictably on the way the question is posed. We investigate this variation by comparing two very different but commonly-used styles of prompting: instruction-based prompts, which describe the task in natural language, and example-based prompts, which provide in-context few-shot demonstration pairs to illustrate the task. We find that, despite large variation in performance as a function of the prompt, the model engages some common underlying mechanisms across different prompts of a task. Specifically, we identify task-specific attention heads whose outputs literally describe the task – which we dub lexical task heads – and show that these heads are shared across prompting styles and trigger subsequent answer production. We further find that behavioral variation between prompts can be explained by the degree to which these heads are activated, and that failures are at least sometimes due to competing task representations that dilute the signal of the target task. Our results together present an increasingly clear picture of how LLMs' internal representations can explain behavior that otherwise seems idiosyncratic to users and developers.
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All authors Zhuonan Yang, Jacob Xiaochen Li, Francisco Piedrahita Velez, Eric Todd, David Bau, Michael L. Littman, Stephen H. Bach, Ellie Pavlick

Machine Learning · Cross-listed from q-bio.NC

Foundation models for discovering robust biomarkers of neurological disorders from dynamic functional connectivity

Several brain foundation models (FM) have recently been proposed to predict brain disorders by modelling dynamic functional connectivity (FC). While they demonstrate remarkable model performance and zero- or few-shot generalization, the salient features identified as potential biomarkers are yet to be thoroughly evaluated. We propose RE-CONFIRM, a framework for evaluating the robustness of potential biomarker candidates elucidated by deep learning (DL) models including FMs. From experiments on five large datasets of Autism Spectrum Disorder (ASD), Attention-deficit Hyperactivity Disorder (ADHD), and Alzheimer's Disease (AD), we found that although commonly used performance metrics provide an intuitive assessment of model predictions, they are insufficient for evaluating the robustness of biomarkers identified by these models. RE-CONFIRM metrics revealed that simply finetuning FMs leads to models that fail to capture regional hubs effectively, even in disorders where hubs are known to be implicated, such as ASD and ADHD. In view of this, we propose Hub-LoRA (Low-Rank Adaptation) as a fine-tuning technique that enables FMs to not only outperform customised DL models but also produce neurobiologically faithful biomarkers supported by meta-analyses. RE-CONFIRM is generalizable and can be easily applied to ascertain the robustness of DL models trained on functional MRI datasets. Code is available at: https://github.com/SCSE-Biomedical-Computing-Group/RE-CONFIRM.
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All authors Deepank Girish, Yi Hao Chan, Sukrit Gupta, Jing Xia, Jagath C. Rajapakse

Machine Learning · Cross-listed from cs.IT

Null-Space Flow Matching for MIMO Channel Estimation in Latency-Constrained Systems

Accurate yet low-latency channel state information (CSI) acquisition is essential for multiple-input multiple-output (MIMO) communication systems. While advanced deep generative models, such as score-based and diffusion models, enable high-fidelity CSI reconstruction from limited pilot observations, they often suffer from high inference latency. To achieve accurate CSI estimation under stringent latency constraints, this paper proposes a null-space flow matching (FM) framework that leverages a range-null space decomposition to separate observation-informed and underdetermined channel components. Specifically, the pilot observations are used to regulate the observable range-space channel component, while an FM-based generative prior primarily resolves the ambiguous null-space degrees of freedom through iterative refinement. To further improve the robustness and efficiency of the proposed framework, we introduce a noise-aware adaptive correction strategy to suppress channel noise on the refinement trajectory, along with a power-law time schedule to better allocate the limited number of refinement steps. Experimental results demonstrate that our method achieves competitive normalized mean square error (NMSE) performance even under a strict latency budget of around 3 ms, while delivering a superior accuracy-latency tradeoff compared with both model-based and generative baselines.
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All authors Junjie Zhao, Guangming Liang, Xiaonan Liu, Dongzhu Liu

Machine Learning

Universal Transformers Need Memory: Depth-State Trade-offs in Adaptive Recursive Reasoning

We study learned memory tokens as a computational scratchpad for a single-block Universal Transformer with Adaptive Computation Time (ACT) on Sudoku-Extreme, a combinatorial reasoning benchmark. Memory tokens are empirically necessary: no configuration without them reaches non-trivial performance. The optimal count has a sharp lower threshold (T=0 always fails, T=8 reliably succeeds) followed by a stable plateau (T=8-32, 57.4% +/- 0.7% exact-match) and a dilution boundary at T=64. Under halt-side pressure (lambda warmup), mean halt drops monotonically with memory size across the plateau (from 11.6 at T=8 to 8.3 at T=64), showing that memory tokens and ponder depth substitute as resources at fixed accuracy. We also identify a router initialization trap that causes the majority of training runs to fail: both default zero-bias and Graves' recommended positive bias settle into a shallow halt equilibrium the model cannot escape. Inverting the bias to -3 ("deep start") eliminates the failure mode, and ablation shows the trap is inherent to ACT initialization rather than an artifact of our architecture. With reliable training, ACT yields an order of magnitude lower seed variance than fixed-depth processing (+/-0.7 vs +/-9.3 pp); lambda warmup recovers 34% of compute at matched accuracy; and attention heads specialize into memory readers, constraint propagators, and integrators across recursive depth. Code: https://github.com/che-shr-cat/utm-jax.
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Machine Learning

When Quotes Crumble: Detecting Transient Mechanical Liquidity Erosion in Limit Order Books

We study the detection of transient liquidity erosion ("crumbling quotes") in electronic limit order books, where observable quote deterioration may reflect either mechanical liquidity withdrawal or informational repricing. Using the ABIDES agent-based simulator, we construct a multi-agent environment in which crumbling emerges from stochastic regime switches in a market maker, providing time-resolved ground truth unavailable in real market data. We develop a detection pipeline that identifies mechanically driven quote erosion using order book features, and train a neural model to produce calibrated crumbling probabilities. Experiments demonstrate that the proposed framework reliably identifies crumbling events against agent-level ground truth, with the neural model achieving +36% AUC improvement over rule-based baselines and robust performance across normal, high-volatility, bull, and bear market conditions. Ablation studies on temporal features and varying the dependence structure of the ground-truth mechanism confirm that the framework generalizes across both independent and autocorrelated liquidity withdrawal dynamics.
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All authors Haohan Xu, Jason Bohne, Pawel Polak, Yurij Baransky, Ajay Alva, Violetta Fedotova, Gary Kazantsev, David Rosenberg

Machine Learning

Multi-Task Optimization over Networks of Tasks

Multi-task optimization is a powerful approach for solving a large number of tasks in parallel. However, existing algorithms face distinct limitations: Population-based methods scale poorly and remain underexplored for large task sets. Approaches that do scale beyond a thousand tasks are mostly MAP-Elites variants and rely on a fixed, discretized archive that disregards the topology of the task space. We introduce MONET (Multi-Task Optimization over Networks of Tasks), a multi-task optimization algorithm that models the task space as a graph: tasks are nodes, and edges connect tasks in the task parameter space. This representation enables knowledge transfer between tasks and remains tractable for high-dimensional problems while exploiting the topology of the task space. MONET combines social learning, which generates candidates from neighboring nodes via crossover, with individual learning, which refines a node's own solution independently via mutation. We evaluate MONET on four domains (archery, arm, and cartpole with 5,000 tasks each; hexapod with 2,000 tasks) and show that it matches or exceeds the performance of existing MAP-Elites-based baselines across all four domains.
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All authors Julian Hatzky, Thomas Bartz-Beielstein, A. E. Eiben, Anil Yaman

Machine Learning · Cross-listed from eess.IV

Conditional Diffusion Posterior Alignment for Sparse-View CT Reconstruction

Computed Tomography (CT) is a widely used imaging modality in medical and industrial applications. To limit radiation exposure and measurement time, there is a growing interest in sparse-view CT, where the number of projection views is significantly reduced. Deep neural networks have shown great promise in improving reconstruction quality in sparse-view CT, especially generative diffusion models. However, these methods struggle to scale to large 3D volumes due to several reasons: (i) the high memory and computational requirements of 3D models, (ii) the lack of large 3D training datasets, and (iii) the inconsistencies across slices when using 2D models independently on each slice. We overcome these limitations and scale diffusion-based sparse-view CT reconstruction to large 3D volumes by combining conditional diffusion with explicit data consistency. We propose Conditional Diffusion Posterior Alignment (CDPA) to enable scalable 3D sparse-view CT reconstruction. A 2D U-Net diffusion model is conditioned on an initial 3D reconstruction to improve inter-slice consistency, combined with data-consistency alignment to match measured projections. Experiments on synthetic and real Cone Beam CT (CBCT) data show state-of-the-art performance, with ablations that confirm the synergistic effects of the proposed pipeline. Finally, we show that the same principles also strengthen fast denoising U-Nets, yielding near-diffusion quality at a fraction of the computational cost.
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Machine Learning · Cross-listed from cs.IT

MambaCSP: Hybrid-Attention State Space Models for Hardware-Efficient Channel State Prediction

Recent works have demonstrated that attention-based transformer and large language model (LLM) architectures can achieve strong channel state prediction (CSP) performance by capturing long-range temporal dependencies across channel state information (CSI) sequences. However, these models suffer from quadratic scaling in sequence length, leading to substantial computational cost, memory consumption, and inference latency, which limits their applicability in real-time and resource-constrained wireless deployments. In this paper, we investigate whether selective state space models (SSMs) can serve as a hardware-efficient alternative for CSI prediction. We propose MambaCSP, a hybrid-attention SSM architecture that replaces LLM-based prediction backbones with a linear-time Mamba model. To overcome the local-only dependencies of pure SSMs, we introduce lightweight patch-mixer attention layers that periodically inject cross-token attentions, helping with long-context CSI prediction. Extensive MISO-OFDM simulations show that MambaCSP improves prediction accuracy over LLM-based approaches by 9-12%, while delivering up to 3.0x higher throughput, 2.6x lower VRAM usage, and 2.9x faster inference. Our results demonstrate that hybrid state space architectures provide a promising direction for scalable and hardware-efficient AI-native CSI prediction in future wireless networks.
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Machine Learning

Conditional anomaly detection using soft harmonic functions: An application to clinical alerting

Timely detection of concerning events is an important problem in clinical practice. In this paper, we consider the problem of conditional anomaly detection that aims to identify data instances with an unusual response, such as the omission of an important lab test. We develop a new non-parametric approach for conditional anomaly detection based on the soft harmonic solution, with which we estimate the confidence of the label to detect anomalous mislabeling. We further regularize the solution to avoid the detection of isolated examples and examples on the boundary of the distribution support. We demonstrate the efficacy of the proposed method in detecting unusual labels on a real-world electronic health record dataset and compare it to several baseline approaches.
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All authors Michal Valko, Hamed Valizadegan, Branislav Kveton, Gregory F. Cooper, Milos Hauskrecht

Machine Learning

Performance Anomaly Detection in Athletics: A Benchmarking System with Visual Analytics

Anti-doping programs rely on biological testing to detect performance-enhancing drugs, but such testing costs over $800 per sample and is limited by short detection windows for many prohibited substances. These constraints leave large portions of athletes without regular testing, motivating complementary screening approaches that analyze routine competition results to identify suspicious performance patterns. We present a system that processes 1.6 million athletics performances from over 19,000 competitions (2010-2025) using eight detection methods ranging from statistical rules to machine learning and trajectory analysis. We validate all methods against publicly confirmed anti-doping violations to measure their effectiveness in identifying sanctioned athletes. Trajectory-based methods, which compare performances to expected career progression, achieve the best balance between detecting violations and limiting false alarms, though all methods face challenges from incomplete data and rare confirmed violations. The system provides an interactive interface for expert-driven investigation, emphasizing transparency and human judgment to support, rather than replace, established anti-doping processes.
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