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Computer Science Machine Learning

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Wednesday 27 May

Machine Learning

Bridging Chemists and AI: An Expert-Augmented Framework for Interpretable Route Evaluation

Selecting efficient multi-step synthetic routes is a central challenge in organic synthesis, particularly in medicinal and process chemistry, where route choice directly impacts feasibility, cost, and development efficiency. Data-driven assessment systems often oversimplify the multi-objective nature of synthesis design and rely on proxy datasets, such as patent routes, rather than universally grounded criteria. To address this, we introduce an expert-augmented, data-driven scoring framework that integrates machine learning with chemists' domain knowledge for both numerical and explainable route assessment. A DeepSets-based model is trained using tree edit distance between reference and machine-generated routes, and then fine-tuned with expert evaluations to produce both quantitative scores and interpretable qualitative categories: Good, Plausible, and Bad. The resulting system achieves a Spearman correlation coefficient of 0.78 and a Pearson correlation of 0.77 for category assessment prediction, and 60.2% top-1 ranking accuracy for score prediction, substantially outperforming the previous baseline of 17.5%.
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All authors Yujia Guo, Mikhail Kabeshov, Tat Hong Duong Le, Samuel Genheden, Marco V. Mijangos, Varvara Voinarvoska, Giulia Bergonzini, Ola Engkvist, Samuel Kaski

Machine Learning

Model Merging by Output-Space Projection

Model merging combines fine-tuned checkpoints into a single multi-task model without retraining. Existing methods - such as task arithmetic, model soups, TIES, and DARE - are computationally efficient and empirically successful, but rely on heuristic design choices and lack formal optimality guarantees. We show that merging can be formulated as a convex quadratic programme over residual updates, yielding weights that minimise a squared-output calibration objective using calibration inputs and fine-tuned model outputs, and subsuming existing methods as special cases. Our framework yields a closed-form diagnostic - the fraction of residual energy captured by a chosen basis - that predicts downstream merge quality using only the calibration set. Empirically, the QP matches or outperforms existing methods in the single-layer setting, and we characterise when the optimal basis provides significant gains over the cheaper diagonal QP. We extend to multi-layer merging via a sequential layer-wise algorithm and demonstrate consistent gains across language and vision benchmarks.
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All authors Bethan Evans, Benjamin Etheridge, Stephen Roberts, Jared Tanner

Machine Learning · Cross-listed from cs.CV

Lightweight Complementary-Cue Fusion for Robust Video Face Forgery Detection

Current face video forgery detectors use wide or dual-stream backbones. We show that a single, lightweight fusion of two handcrafted cues can achieve higher accuracy with a much smaller model. Based on the Xception baseline model (21.9 million parameters), we build two detectors: LFWS, which adds a 1x1 convolution to combine a low-frequency Wavelet-Denoised Feature (WDF) with a phase-spectrum channel derived from Spatial-Phase Shallow Learning (SPSL), and LFWL, which merges WDF with Local Binary Patterns (LBP) in the same way. This extra module adds only 292 parameters, keeping the total at 21.9 million, smaller than F3Net (22.5 million) and less than half the size of SRM (55.3 million). Even with this minimal overhead, the fused models increase the average area under the curve (AUC) from 74.8% to 78.6% on FaceForensics++ and from 70.5% to 74.9% on DFDC-Preview, gains of 3.8% and 4.4% over the Xception baseline. They also consistently outperform F3Net, SRM, and SPSL in eight public benchmarks, without extra data or test-time augmentation. These results show that carefully paired, handcrafted features, combined through the lightweight fusion block, can provide competitive robustness at a significantly lower cost than comparable frequency-based detectors. Our findings suggest a need to reevaluate scale-driven design choices in face video forgery detection.
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All authors Sunghwan Baek, Tariq Anwaar, Karanveer Singh, Rita Singh

Machine Learning

OISD: On-Policy Internal Self-Distillation of Language Models

Recent reinforcement learning (RL) post-training approaches primarily optimize the final output policy using sparse outcome-level rewards, while largely overlooking predictive signals encoded in intermediate representations. In this paper, we introduce a new paradigm called on-policy internal self-distillation and propose the OISD framework, which improves reasoning by transferring on-policy predictive signals from the final layer to intermediate representations. During rollout and Group Relative Policy Optimization (GRPO) optimization, the final layer acts as both the policy and a detached internal teacher for selected intermediate layers, which are guided to align with it through two complementary mechanisms: logit alignment, which transfers high-level reasoning behaviors (how to think), and attention alignment, which enforces consistent attention patterns (where to look) from the final layer to the selected intermediate layer, both without requiring external privileged information. Our OISD, together with GRPO, employs signed advantage-weighted Jensen–Shannon alignment to distill informative intermediate representations while preserving policy consistency under a unified acting policy. Experimental results demonstrate the effectiveness of OISD, with substantial and consistent improvements over strong reasoning RL baselines across four mathematical reasoning tasks. The code will be released at https://github.com/THE-MALT-LAB/OISD
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All authors Xinyu Liu, Darryl Cherian Jacob, Yang Zhou, Jindong Wang, Pan He

Machine Learning · Cross-listed from cs.AI

Bridging the Sim-to-Real Gap in Reinforcement Learning-Based Industrial Dispatching through Execution Semantics

Event-driven scheduling policies are increasingly deployed in industrial environments, where decisions are made under asynchronous and partially observed system states. As a result, decision states are not temporally consistent, action admissibility is not explicitly defined, and the origin of execution errors remains ambiguous. These issues limit both reliability and interpretability. To address this gap, a policy-neutral execution and measurement layer is proposed to mediate between scheduling policies and the industrial execution environment. The layer constructs decision-valid snapshots from asynchronous event streams, defines a standardized execution contract with explicit action admissibility, and records outcomes as divergences between policy intent, transactional outcomes, physical execution, and human intervention. This enables a separation between decision semantics and execution behavior and makes deployment mismatch observable and structurally attributable. The proposed framework is evaluated using a discrete-event simulation. The results show analytical benefits across all observation lag regimes, as undifferentiated execution failures are transformed into structured, typed outcomes with full attribution coverage. Operational benefits are strongest under low observation lag, where avoidable execution errors can be prevented before commitment. Overall, the layer turns execution uncertainty into supervisory data for evaluation and policy refinement.
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Machine Learning · Cross-listed from cs.CL

Structured Prompt Optimization Meets Reinforcement Learning for Global and Local Interpretability over Complex Text

LLMs have advanced text classification, yet existing paradigms face a trade-off: supervised (label only) fine-tuning is scalable but offers limited reasoning on complex text and lacks broader model transparency, while discrete prompt optimization offers human-readable instructions but struggles with performance and scalability. We introduce eXTC (eXplainable Text Classifier) with three progressive stages: (1) learning a Standard Operating Procedure (SOP, or rulebook) in natural language via a new Structured Prompt Optimization algorithm; (2) SOP-grounded reasoning distillation from a large teacher LLM into a compact LM; and (3) expanding reasoning capabilities beyond the initial SOP via reinforcement learning. This design enables eXTC to provide (i) fast inference via a compact LM, with (ii) inference-time local reasoning traces, alongside a global, modular explanation of its learned domain rules, while (iii) significantly outperforming existing paradigms across diverse benchmarks in both classification performance and explanation quality, with stage-by-stage gains.
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All authors Tianyang Zhou, Wenbo Chen, Pierre Jinghong Liang, Leman Akoglu

Machine Learning

Knowledge Offloading: Decomposing LLMs into Sparse Backbones and Memory Modules

LLMs encode both general capabilities and domain-specific knowledge in a single set of parameters. We ask whether this capacity can be reorganized: keeping broadly useful computation in a shared backbone, while moving specialized knowledge into external memory modules. We propose knowledge offloading (KOFF), a framework for decomposing a pretrained LLM into a sparse shared backbone and domain-specific memories. Starting from a frozen base model, we either jointly or sequentially learn a structured pruning mask and lightweight recovery modules, implemented as LoRA adapters and learned key-value caches. Across Llama and Qwen models from 3B to 14B, we find that 12% to 20% of capacity can be moved out of the shared backbone while largely preserving perplexity and MMLU performance (up to 90% of the full model). We show that LoRA and learned KV memories are complementary, and analyses suggest that the offloaded knowledge is specialized: mismatched memories do not yield the same gains, and language-specific neurons are preferentially removed while language-neutral neurons largely remain in the backbone. These results suggest that the knowledge of a pretrained LLM can be reallocated between a shared core and swappable external memories.
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Machine Learning

Diffusion Model-Based Data Assimilation for Real-World Energy Consumption Forecasting

Accurate estimation and forecasting of energy consumption are important for power-system operation, planning, and demand-side management. In practice, however, complete and timely measurements may not always be available, and the observed data can be partial, noisy, or delayed. This motivates the use of learned forecasting models for predicting the evolving consumption state, together with data assimilation methods for sequential forecast correction. In this work, we study a high-dimensional data assimilation problem for real energy-consumption data. \modeltext{The forward prediction is supplied by a pretrained black-box spatio-temporal forecasting model, which is treated as the state propagator in the filtering procedure.} We employ the Ensemble Score Filter (EnSF) to assimilate partial and noisy observations and to correct the forecast trajectory over time. The EnSF uses score-based diffusion models to approximate filtering distributions and avoids retraining neural-network score models during assimilation by using a closed-form score representation and Monte Carlo approximation. Numerical experiments demonstrate that open-loop propagation of the learned forecasting model can become unreliable over long horizons, while EnSF-based correction substantially improves state estimation. Comparisons with the Ensemble Kalman Filter (EnKF) further show that EnSF provides stronger correction under the nonlinear observation setting considered in this work.
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All authors Ruoyu Hu, Dahai Yu, Feng Bao, Guang Wang, Guannan Zhang

Machine Learning · Cross-listed from cs.AI

Robust and Efficient Guardrails with Latent Reasoning

Maintaining the safety of large language models (LLMs) is crucial as they are increasingly deployed in real-world applications. Existing safety guardrails typically rely on single-pass classification or, more recently, distilled reasoning. Reasoning-based guardrails significantly outperform classification-only baselines, but they incur substantial query latency and token overhead that make them impractical for highthroughput deployment. To address this challenge, we propose COLAGUARD, a guardrail model that transfers multi-step safety reasoning into a continuous latent space through a stage-wise training curriculum, enabling direct hidden-state propagation at inference. Evaluated on ten prompt- and response-moderation settings spanning eight safety benchmarks, COLAGUARD improves macro-F1 by 8.24 points over Llama Guard 3 and matches our explicit reasoning baseline, GuardReasoner, in macroF1 while delivering a 12.9X speedup and 22.4X reduction in token usage. Our results suggest that latent reasoning offers a practical alternative to explicit rationale generation for deployable guardrails, jointly improving safety robustness and inference efficiency rather than treating them as competing objectives.
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Machine Learning

Parallel Adaptive Multi-Objective Evolutionary Learning of Discretized Bayesian Network Classifiers for Clinical Data

Bayesian Networks (BNs) are of interest from an explainable AI viewpoint, offering transparent probabilistic models for decision support. Baymex is a recently introduced multi-objective evolutionary algorithm for learning discretized BNs, enabling experts to trade-off different objectives of interest, such as likelihood, model complexity, and prior beliefs. While Baymex has been shown to outperform state-of-the-art BN learning approaches, Baymex still 1) requires a lot of computation time and 2) has only been evaluated on synthetic data. To improve scalability, we introduce a parallelization strategy as well as a mechanism that enables adaptively steering optimization toward networks that overfit less. We furthermore reconfigure Baymex to train a BN classifier through multi-objective optimization of cross-entropy loss and the BIC complexity term so as to evaluate its performance on real-world clinical classification tasks. Besides observing speedups up to over 54 times on a 16-core CPU, comparisons against clinically familiar baselines (decision trees, logistic regression, naive Bayes, and random forests) on two open-source (RADCURE and SUPPORT) and one in-house dataset, show that Baymex obtains statistically similar or better predictive performance while producing compact, clinically inspectable BNs. Importantly, Baymex finds multiple plausible BN classifiers that contain predictors consistent with established clinical factors.
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All authors Damy M.F. Ha, Thalea Schlender, Yvette M. van der Linden, Peter A.N. Bosman, Tanja Alderliesten

Machine Learning · Cross-listed from cs.AI

Differentiable Belief-based Opponent Shaping

Human coordination often relies on the ability to influence the beliefs of others through strategic action. In multi-agent reinforcement learning, opponent shaping attempts to replicate this influence, though existing methods typically operate within an opponent's parameter, policy, or value space. Meanwhile, belief-manipulation techniques in hidden-role games often rely on hard-coded objectives, such as deception or belief saturation. We propose Differentiable Belief-based Opponent Shaping (D-BOS), a first-order method that treats each observer's belief as the shaped opponent state and differentiates through $k$-step softmax-Bayes belief dynamics. Rather than explicitly rewarding deceptive or cooperative behavior, our method treats the belief state as the target for shaping. This allows the optimal strategy to emerge naturally from the environment's reward structure. This belief-space formulation provides an opponent-shaping signal by differentiating through opponent belief updates, and naturally extends to multiple observers by aggregating gradients over their individual inferred belief trajectories. Empirically, D-BOS outperforms PPO and BBM in hidden-role games, with the largest gains in mixed-motive settings.
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Machine Learning

Moment Matching Q-Learning

Score-based and flow-based generative models exhibit remarkable expressive capacity in capturing complex distributions, and have been extensively deployed in tasks ranging from image generation to reinforcement learning. Nevertheless, these models suffer from prolonged inference latency, which imposes a significant computational bottleneck in RL with iterative sampling. To overcome this limitation, we propose a new framework named Moment Matching Q-Learning (MoMa QL), which utilizes a technique from statistical hypothesis testing known as maximum mean discrepancy (MMD) that intend to match all orders of statistics between the original and target distribution. By enforcing strong regularization on all moment statistics, this algorithm guarantees distribution-level convergence for conditional score function and remains stable under various hyperparameters. Empirically, we show that our method MoMa QL is more computationally efficient with a comparable if not competitive performance in various D4RL tasks. Remarkably, by accelerating the action sampling process for flow-based policies, MoMa QL demonstrates superior performance in offline-to-online RL tasks because of faster and stronger adaptability for online interactive finetuning.
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Machine Learning

Theoretical Foundations and Effective Algorithms for Policy-Aware Simulator Learning

Model-based reinforcement learning (MBRL) agents typically learn world models by minimizing predictive loss. However, powerful RL optimizers inevitably exploit minor model inaccuracies, leading to simulator exploitation and a reality gap where policies succeed in simulation but fail in the real world. We propose that the objective for learning simulators should be strategic robustness rather than predictive accuracy, and formulate this as a zero-sum minimax game between a model player and an adversarial policy player. We provide a comprehensive theoretical analysis: (1) an online learning guarantee showing the game is learnable with sublinear regret bounds; (2) a tractable critic-based simplification bounding the global policy-value gap by the local critic's loss; and (3) an Error-MDP duality, proving that finding the worst-case policy is formally dual to a standard RL problem where the reward is the one-step critic error. This duality yields a provably convergent active data selection algorithm. Experiments on continuous control tasks demonstrate that our approach reduces prediction error in strategically important regions by $1.5$-$2.2\times$ and enables policies trained purely in simulation to match near-optimal real-world performance.
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Machine Learning

Return-to-Go Is More Than a Number: Q-Guided Alignment for Return-Conditioned Supervised Learning

Conditioned Sequence Models (CSMs) learn policies by treating return-to-go (RTG) as a control signal. However, existing CSMs often treat the RTGs as simple numerical inputs rather than aligning them with the performance of their policies. In this paper, we propose Q-ALIGN DT, a framework that enforces this alignment by ensuring the $Q$-value of the output policy is consistent with the input RTG. By leveraging a $Q$ function to provide dense guidance to CSMs and further fine-tuning it using an RTG-perturbation technique with the CSM, our method ensures that higher RTGs are consistently mapped to trajectories with higher expected returns. Theoretically, we show that Q-ALIGN DT can efficiently learn the desired policy and output a near-optimal one when the RTG is sufficiently high. Empirically, we demonstrate through extensive experiments that Q-ALIGN DT achieves superior controllability and performance across the D4RL benchmark. Remarkably, our model effectively learns a structured family of policies that maintains precise alignment and generalizes to tasks like velocity-tracking where prior methods fail.
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Machine Learning

Designing Active Tether-Net Systems for Space Debris Capture with Graph-Learning-Aided Mixed-Combinatorial Optimization

Active tether-net systems are a promising solution for capturing large non-cooperative targets, such as space debris, by deploying a flexible net manipulated by maneuverable units (MUs). However, concurrent systematic explorations of design and control choices of the tether-net system to understand its full potential remain limited, partly due to the complex, constrained, nonlinear optimization problem that it presents – one that involves a mixture of continuous, integer and categorical variables, with the latter two arising from net connectivity and component choices, respectively. Classical binary encoding methods are often ineffective for solving highly nonlinear and multimodal Mixed Combinatorial Nonlinear Programmings (MCNLPs) in engineering design, while integer coding approaches can introduce spurious relations among combinations. Given the graph-structured characteristics of the combinatorial space, this paper adopts and extends a new graph-learning-aided optimization approach to solve this MCNLP problem. Here, a Graph Neural Network (GNN) is trained to score (as output) and thereof recommend candidate combinations represented as nodes in a graph, with the continuous variable vector portion of a candidate design given as input. As a result, the MCNLP optimization reduces to an NLP, which can be solved using standard solvers. While this reduction approach is agnostic to the choice of the NLP solver, here a state-of-the-art Particle Swarm Optimization (PSO) algorithm with gradient-based fine-tuning is used as the solver. Demonstrated on the problem of concurrently designing the morphology of the net, choice of mass and thrusters in the MUs and aiming points used by the controller of the tether-net system, the GNN-based recommender is shown to provide significantly faster convergence to similar optimal solutions, compared to direct solution of the MCNLP problem.
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All authors Feng Liu, Achira Boonrath, Gishnu Madhu, Eleonora M. Botta, Souma Chowdhury

Machine Learning · Cross-listed from astro-ph.IM

Three-dimensional Conditional Diffusion Models for Cosmological 21 cm Lightcone Emulation

We investigate conditional diffusion modeling for three-dimensional 21 cm lightcone emulation, focusing on cubes with a sky-plane size of $64\times64$ and a line-of-sight depth up to 1024 cells. Relative to earlier 2D studies, the 3D setting is substantially harder because memory limits enforce very small micro-batches while the underlying voxel distribution is highly skewed and long tailed. We perform controlled comparisons across preprocessing choices, dynamic-range compression settings, architecture depth, and training duration using $25{,}600$ training lightcones and validation ensembles at fixed parameter points. For validation, each reference parameter point contains 800 21cmFAST realizations with independent initial conditions, and we use 800 samples per model and per reference set for the reported ensemble comparisons. We evaluate generated lightcones with complementary diagnostics in both image and summary-statistic spaces: brightness-temperature slices, the global signal, the power spectrum, and reduced scattering coefficients. Across the tested configurations, preprocessing is the dominant factor governing stable training and the resulting physical fidelity. Among the configurations explored here, Yeo-Johnson preprocessing combined with moderate amplitude compression gives the most consistently favorable trade-off, with the strongest quantitative support coming from rankings based on the standard-deviation-normalized mean absolute error ($\mathrm{MAE}_{\rm std}$) of the global signal and qualitatively compatible behavior in the complementary diagnostics. At the same time, visually plausible 3D samples still retain measurable biases in two-point and higher-order statistics. We therefore view the present work as a simulation-level baseline for three-dimensional 21 cm emulation and for future studies that incorporate more realistic observational effects.
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Machine Learning

Label-Free Reinforcement Learning via Cross-Model Entropy

Post-training large language models with reinforcement learning is bottlenecked by the reward signal. Existing approaches require either ground-truth verifiable rewards, restricting training to domains with automatic correctness checks (e.g., mathematics, code execution), or human preference labels, which are expensive to collect and prone to reward hacking. Recent label-free methods replace ground-truth verifiers with self-referential signals like majority voting or token entropy over a model's own outputs, but risk reinforcing a model's own errors. In this work we propose Cross-Model Entropy (CME), the mean log-likelihood of a generator's response under a separate verifier model, as a label-free reward signal for RL post-training. CME is continuous, training-free, and grounded in the principle that responses a verifier finds unsurprising are likely correct or high quality. Because the verifier is independent of the generator, the signal cannot be gamed through self-consistency. We integrate CME into GRPO with no other changes to the training loop, extending label-free RL to open-ended instruction following – a regime where self-referential signals are inapplicable or poorly suited. On open-ended instruction following (UltraFeedback prompts, evaluated on AlpacaEval 2.0), CME rewards beat the untrained base in head-to-head LLM-as-Judge comparisons across four model families (Qwen, Llama, Gemma, OLMo) and three training regimes (pretrained, SFT, and instruction-tuned), with tie-adjusted win rates ranging from 52.5% to 71.4%. Code will be released upon publication.
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Machine Learning

Causal Intelligence for Constraint-Aware Intervention Design to Induce State Transitions

Driving a system from one state to another through targeted interventions is a fundamental challenge in science, yet most predictive models offer limited mechanistic insight and no principled framework for decision-making. Here we present COAST (Causally Optimal Actions for State Transitions), a causal-intelligence approach for the in-silico design of constrained interventions that induce user-defined state transitions. Given data characterizing source and target states, COAST learns context-specific causal graphs and structural causal models, attributes observed distributional shifts to mechanism-level causal drivers, and introduces a novel constraint-aware multi-objective optimization formulation that balances transition efficacy, intervention complexity, and target-state stability. The approach is modular and domain-agnostic, integrating feature selection, causal discovery, causal modeling, and intervention identification and evaluation through interchangeable components. Across synthetic benchmarks and real biological datasets, COAST recovers key causal drivers and identifies robust single- and multi-target intervention strategies that achieve desired state transitions, accompanied by transparent mechanistic rationales to guide experimental validation.
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Machine Learning

LoRe: Adaptive Interaction-Evaluation Routing with Per-Step Interaction Budgets for Iterative Graph Solvers

Diffusion-based neural solvers for combinatorial optimization repeatedly re-evaluate dense edge/factor interactions, making inference expensive in wall-clock time and often memory-bound at scale. Inspired by the computational methodologies of many-body physics, we introduce LoRe, a training-free, inference-time drop-in wrapper that enforces per-step interaction-evaluation budgeting: at each iteration, it evaluates only a fixed fraction of interactions by dynamically routing computation to high-conflict or high-uncertainty interactions, instead of using a fixed sparsification (e.g., static kNN graphs or static masks). Under fully inclusive end-to-end wall-clock accounting, LoRe substantially improves scalability on the Maximum Independent Set (MIS) problem, extending feasible inference more than $3\times$ beyond the baseline's out-of-memory limit, delivering a $\sim 8\times$ speedup and a $\sim 12\times$ peak-memory reduction, with solution quality preserved in this regime. Demonstrating cross-task generality on the large-scale Traveling Salesperson Problem (TSP) and zero-shot robustness to topology shifts, LoRe achieves a $\sim 15\times$ speedup at $n=1000$ with a $44\times$ memory reduction and competitive tour quality.
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All authors Jintao Li, Yong-Yi Wang, Zheng-An Wang, Heng Fan

Machine Learning

FedQHD: Closed-Form Function-Space Federated Reinforcement Learning

Federated reinforcement learning enables decentralized agents to collaboratively improve policies or value estimates without exchanging raw trajectories. However, FedAvg-style parameter averaging is not function-space consistent: when clients use heterogeneous encoders or even identical nonlinear networks, averaged parameters need not correspond to the weighted average of client value functions in any common function space. We propose FedQHD, a federated Q-learning method using hyperdimensional (random-feature) state encoders with a linear readout, so that Q-functions are nonlinear in state yet linear in trainable parameters. This linear structure enables closed-form aggregation. With a shared encoder, the function-space consensus update coincides exactly with weighted averaging of local readout matrices. With heterogeneous encoders, the server constructs a global teacher by averaging client Q-values on a shared anchor-state set, and each client compiles this teacher into its local representation via a single ridge projection. We formalize the federation gap – the error incurred when compiling a federated teacher into a heterogeneous client representation – relative to a client-specific oracle projection. We show that this gap decomposes into subspace misalignment, anchor-set conditioning, and regularization bias. We further identify the anchor-to-dimension ratio $m \geq D_i$ as the well-conditioned regime in which the gap reduces to a multiple of the encoder heterogeneity floor. On four continuous-state, discrete-action control benchmarks, FedQHD matches or outperforms FedAvg-style baselines and distillation-based alternatives while requiring substantially less computation, and the empirical dependence of the federation gap on encoder dimension matches our theoretical analysis.
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All authors Yuchen Hou, Yongshan Chen, Zhuowen Zou, Calvin Yeung, Mohsen Imani, Tian Lan, Mahdi Imani

Machine Learning

FormInv: A Measurement Protocol for Semantic Invariance in Mathematical Reasoning Benchmarks

A paraphrase-quality audit of MathCheck (ICLR 2025) detected 4 semantically incorrect paraphrases in 129 groups (3.1%); removing them drops GPT-4o from rank 2 to rank 4 and elevates Claude Haiku and DeepSeek V3 above it. Cross-model unanimity found these errors automatically for under $10; in our own dataset the same protocol found that 47% of auto-generated connective-variation paraphrases were semantically incorrect. That flaw compounds a deeper measurement gap. On the theorems every model answers correctly in canonical form, a semantically equivalent rewording still flips the answer for 5-42% of them: Claude Haiku 4.5 flips a known-correct answer about 9x as often as DeepSeek V3 (41.9% vs. 4.7% on the 43 theorems all models share), a difficulty-controlled gap we call the Conditional Inconsistency Rate (CIR). The CIR ranking replicates on an independent 103-theorem set. Raw Semantic Consistency Rates (SCR) span 50-82% across 9 models, but this spread is mostly a mechanical consequence of compounding accuracy over k ~ 6 paraphrases; what CIR isolates is the within-theorem clustering of failures. Because no model dominates on all paraphrase families, the families a benchmark includes implicitly fix its model ranking (a No-Free-Benchmark corollary). FormInv supplies the audit protocol, CIR and SCR as invariance measures, evaluated on 9 models across 366-811 items whose canonical statements are Lean4-verified, and FormInvSelector for regime-aware model selection.
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Machine Learning · Cross-listed from cs.CR

Measuring Real-World Prompt Injection Attacks in LLM-based Resume Screening

LLMs are vulnerable to prompt injection attacks. However, this vulnerability has been primarily demonstrated conceptually in academic studies or through a few anecdotal case studies. Its prevalence and impact in real-world LLM-based applications are largely unexplored. In this work, we present the first systematic study of prompt-injection attacks in a widely used application: LLM-based resume screening. Our analysis is based on approximately 200K real-world resumes collected over multiple years by hireEZ. We first design tailored methods to detect prompt injection in resumes. Manual validation on a small-scale dataset demonstrates that our detectors achieve high precision and outperform state-of-the-art general-purpose detectors. We then apply our detector to the full resume dataset and conduct a comprehensive measurement study of real-world prompt injection attacks. Our analysis reveals several intriguing findings: approximately 1% of resumes contain hidden prompt injections; the prevalence of such injected resumes has increased noticeably over the past one to two years; and more than 90% of injected prompts do not use explicit instructions. These results provide the first evidence of large-scale prompt injection in real-world LLM-based applications and lay the groundwork for future studies to understand and mitigate such attacks.
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All authors Mohan Zhang, Yuqi Jia, Zhen Tan, Steven Jiang, Neil Zhenqiang Gong, Tianlong Chen, Dawn Song

Machine Learning

Learning Robust and Task-Invariant Functional Representation from fMRI through Siamese Self-Supervised Learning

Functional magnetic resonance imaging (fMRI) is a powerful tool for investigating human brain function. However, the high cost of data acquisition and the inherent subjectivity of psychiatric rating scales often lead to datasets with small sample sizes and variable label quality, especially when targeting a specific neurological condition. Combined with the inherently high dimensionality of fMRI data, these limitations substantially increase the risk of model overfitting. Recent years have seen growing interest in developing fMRI foundation models by combining multiple datasets; however, the computational resources needed for pretraining and fine-tuning are often prohibitive. We show that a lightweight self-supervised framework yields representations that generalize across diverse downstream tasks, outperforming fully supervised baselines and approaching the performance of large-scale models. We introduce BrainSimSiam, a data-efficient self-supervised representation learning framework that leverages positive-only data pairs to learn robust and generalizable features. We demonstrate that the learned representations achieve strong performance across multiple downstream classification and regression tasks, highlighting the potential of BrainSimSiam for data-limited neuroimaging applications.
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All authors Jiyao Wang, Peiyu Duan, Nicha C. Dvornek, Lawrence H. Staib, Denis Sukhodolsky, Pamela Ventola, James S. Duncan

Machine Learning

The Hamilton-Jacobi Theory of Deep Learning

In this paper, training a neural network is identified, exactly, as a search through Hamilton–Jacobi initial-value problems: each gradient step selects the initial data of a viscous Hamilton–Jacobi equation whose Hopf–Cole propagator best fits the observations; at inference, the input is the spatial point at which that solution is evaluated and the initial condition is already encoded in the weights. The correspondence is exact for log-sum-exp layers, with ReLU, sigmoid, SiLU, and GELU each an exact limit, gradient, or moment of the same object, and exact in composition across depth and width, with a quantified error at finite depth that vanishes in the joint limit. It is structural for residual networks, transformers, and recurrent networks (RNNs, LSTMs, SSMs), each discretizing the same class of equations, at a named and quantified approximation error. A single deformation parameter $\varepsilon$ unifies all four perspectives (network, tropical algebra, viscous PDE, convex optimization) in a commutative diagram closed under Lipschitz conditions. Quantitative consequences include: the minimax optimal generalization rate $O(n^{-1/(d+2)})$ for fixed $t$; adversarial robustness controlled by $\varepsilon$; backpropagation as the co-state equation of the Hamiltonian system for residual networks (Pontryagin Maximum Principle); scaling exponents consistent with data intrinsic dimension via PDE quadrature; and a closed-form $O(N)$ influence function (softmax attribution weights $\pi_j$) whose entropy landscape undergoes fold bifurcations as $\varepsilon$ increases, each merging attribution basins.
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Machine Learning · Cross-listed from math.OC

Manifold-based Algorithms for the Hadamard Decomposition

Given a matrix $X$, and two ranks $r_1$ and $r_2$, the Hadamard decomposition (HD) looks for two low-rank matrices, $X_1$ of rank $r_1$ and $X_2$ of rank $r_2$, both of the same size as $X$, such that $X\approx X_1\circ X_2$, where $\circ$ is the Hadamard (element-wise) product. In most cases, HD is more expressive than standard low-rank approximations such as the truncated singular value decomposition (TSVD), as it can represent higher-rank matrices with the same number of parameters; this is because the rank of $X_1 \circ X_2$ is generically equal to $r_1 r_2$. In this paper, we first present some theoretical insights for HD, in particular a useful reformulation $X\approx WH^\top$ where $W$ and $H$ have $r_1 r_2$ columns and belong to certain manifolds. These allow us to develop three new algorithms for computing HD. The first one uses the representation $X\approx X_1\circ X_2$ and relies on the Manopt toolbox. The other two rely on the reformulation $X\approx WH^\top$: one is a block projected gradient method, and the other is a manifold-based gradient descent algorithm that does not require projection onto the feasible set. The last two algorithms are particularly effective for handling large sparse data. We also propose new initializations that allow us to improve the accuracy of the HD. We compare our algorithms and initialization strategies with the TSVD and with the state of the art. Numerical results show that the new methods are efficient and competitive on both synthetic and real data.
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All authors Nicolas Gillis, Subhayan Saha, Stefano Sicilia, Arnaud Vandaele

Machine Learning

Comparing Post-Hoc Explainable AI Methods for Interpreting Black-Box EEG Models in Depression Detection

Recent advances in deep learning have enabled increasingly accurate electroencephalography (EEG)-based classification of Major Depressive Disorder (MDD), but the decision-making processes of high-capacity models remain difficult to interpret. This study investigates multiple post-hoc explainability methods applied to an InceptionTime architecture trained for EEG-based MDD detection. The analysis includes Shapley-based, gradient-based, and perturbation-based attribution approaches: DeepSHAP, Integrated Gradients, GradCAM, Occlusion, and Permutation Feature Importance. Explainability analysis was performed within a subject-level stratified 5-fold cross-validation framework using global attribution aggregation across EEG segments and subjects. The evaluated methods revealed partially convergent attribution patterns, with recurring emphasis on frontal, temporal, and posterior EEG regions, particularly in the right hemisphere. Quantitative comparison demonstrated substantial agreement between gradient- and perturbation-based approaches, while DeepSHAP produced comparatively distinct attribution distributions. At the same time, variability between explainability methods highlighted the influence of methodological assumptions on the resulting explanations. Overall, the results suggest that different post-hoc explainability approaches capture partially overlapping relevance structures in EEG-based deep learning models for depression detection. Although the observed attribution patterns are broadly consistent with several previous EEG studies of MDD, the analysis should be interpreted as exploratory rather than evidence of definitive neurophysiological biomarkers or clinical applicability. The study highlights both the usefulness and limitations of post-hoc explainability for interpreting black-box EEG classifiers in psychiatric applications.
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Machine Learning

A Training-Time Diagnostic for Generalization via the Log-Alignment Ratio

We study the log-alignment ratio (LAR), a measure of parameter-activation alignment, introduced in parameterization theory. We reformulate it as the overlap between a weight spectrum $p$ of the normalized squared singular values of a matrix and an activation spectrum $q$ of the normalized squared projections of inputs onto its singular directions. We show that unembedding LAR tracks the transition between memorization and generalization in two different settings by capturing the spread of $p$ and $q$ during training. In grokking, LAR predicts the effective dimension of the learned function: $k \approx n^{2(1-\text{LAR})}$, where $n$ is the input dimension of the matrix. In 3B-parameter language model pre-training, its deviation from a non-overfitting baseline tracks the generalization gap, and its rate of decline increases as overfitting approaches. LAR is computable from quantities available during the forward pass with negligible computational overhead, and requires no held-out validation data.
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Machine Learning · Cross-listed from stat.ML

Dynamics of Stochastic Momentum with Sparse Updates in High Dimensions

Existing theory of momentum assumes that gradients arrive at every parameter at a roughly constant rate, an assumption violated in practice by heavy-tailed data distributions and modern architectures. We theoretically analyze the dynamics of two tractable models of momentum under sparse updates: a least squares model with sparse inputs and a logistic regression model with a rare class. Both admit exact closed-form second-moment dynamics whose high-dimensional limits we characterize across three scaling exponents for sparsity, batch size, and momentum decay. The phase structure on both problems is governed by the ratio of two intrinsic timescales: a momentum retention timescale (how many active updates the buffer survives) and a learning timescale (how many active updates it takes to reduce the squared error). When learning is much slower than retention, the limit matches SGD; when learning is faster, the system is unstable; where the timescales coincide, we recover classical heavy-ball dynamics. The oscillatory dynamics occur at different momentum values for different token sparsity, creating a spectral conflict for global momentum across token frequencies.
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Machine Learning · Cross-listed from cs.CR

Optimal Rates for Differentially Private Hypothesis Testing with E-values

E-values have attracted considerable interest in recent years as flexible tools for enabling anytime-valid and adaptive data analysis. Hypothesis testing is at the core of many of these applications, which can often involve private or sensitive data. In this work, we answer a simple but important question: given two distributions $\mathbb{P}$ and $\mathbb{Q}$, what is the maximum achievable e-power when testing $X\sim \mathbb{P}^n$ against $X\sim\mathbb{Q}^n$ with e-values that satisfy $\varepsilon$-differential privacy? We characterize the optimal rate for this problem and provide an algorithm which matches it exactly. In the sequential setting, when observations arrive one-by-one and the analyst chooses when to halt, we give matching upper and lower bounds on the stopping times of any private e-process. Numerical experiments confirm the practicality of our algorithms, which require less data than the recently proposed DP-SPRT across a range of sequential testing problems and privacy levels.
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All authors Ben Jacobsen, Tomas Gonzalez, Gavin Brown, Kassem Fawaz, Aaditya Ramdas

Machine Learning · Cross-listed from hep-ph

Neural Scaling Laws for Jet Generation

Recently observed empirical scaling laws describe the performance of foundation-type models as three independent key quantities – dataset size, compute, and model parameters – are modified. Extracting these scaling laws informs the training of large complex models for which the tuning of hyperparameters in traditional ways is not feasible. This work for the first time explores if scaling laws can also be observed for the task of particle jet generation – both relevant as a pre-training objective for foundation models and as in-situ simulation by itself. We indeed replicate the key logarithmic scaling law behavior for model-size scaling. Beyond studying the next token prediction validation loss of the generative model, we also study the sliced Wasserstein distance of five physical quantities that are not immediately available to the model during training. Our study shows that this quantity is monotonically related to the next token prediction validation loss, meaning that this loss is indeed a good proxy for the physics performance. For the scaling with dataset size and compute, we observe substantially weaker scaling behavior of both the loss and the sliced Wasserstein distance. We analyze this behavior by introducing the concept of a learnable window, and argue that autoregressive next token prediction on jet constituents exhibits comparatively rapid saturation relative to language-model studies. We discuss possible origins of this behavior, including the stochastic nature of QCD radiation and differences between generative and supervised learning tasks in collider physics.
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All authors Oz Amram, Darius A. Faroughy, Tjarko Gerdes, Anna Hallin, Gregor Kasieczka, Michael Krämer, Humberto Reyes-Gonzalez, David Shih