Machine Learning · Cross-listed from cs.CL
Position: The Term "Machine Unlearning" Is Overused in LLMs
Sangyeon Yoon, Yeachan Jun and Albert No
Large
language models increasingly face demands to "forget" training data, knowledge, or behaviors due to regulatory deletion obligations, copyright/licensing disputes, and safety or product-policy requirements. This position paper argues that machine unlearning is overused as a term in LLM research and should be reserved for
dataset-defined deletion: removing the training influence of a precisely specified forget set such that the resulting model is approximately indistinguishable from retraining without that data. We contend that many tasks currently labeled "unlearning" (e.g., refusal for harmful requests, entity/knowledge removal, or targeted suppression) pursue different, often policy-dependent objectives and therefore require different terminology and baselines (e.g.,
alignment, suppression, editing, obfuscation). We further argue that this confusion is not cosmetic: because papers make different implicit guarantees under the same label, metrics and
benchmarks are frequently reused outside their intended scope, rewarding surface-level non-disclosure (e.g., low ROUGE/forget accuracy) even when retraining-equivalence is not tested and derived capabilities remain. We conclude by calling for stricter terminology tied to explicit guarantees and reference models, and for evaluations that match the claimed objective.
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Machine Learning · Cross-listed from cs.NE
Kernel Foundry: A Diagnosis-driven Evolutionary Kernel Optimizer with Multi-Experts
Zixuan Huang, Da Chen, Kecheng Huang et al. (+5 more)
Generating high-performance GPU kernels remains challenging due to the need for both correctness and hardware-aware optimization. While large
language models (LLMs) show promise in code generation, they often fail to produce kernels that are both correct and efficient. We propose Kernel Foundry, a diagnosis-driven evolutionary framework for automatic GPU kernel optimization. Our method combines expert-guided,
retrieval-augmented initialization with a multi-island evolutionary search, where candidate kernels are iteratively refined using structured diagnostic feedback. A centralized experience library accumulates reusable optimization knowledge to guide subsequent
evolution, while explicit mechanisms prevent cheating behaviors that bypass kernel-level computation. Experiments on KernelBench show that our method consistently improves both correctness and performance over strong baselines, achieving up to 100% correctness on Level~2.
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All authors Zixuan Huang, Da Chen, Kecheng Huang, Lihao Yin, Xing Li, Huiling Zhen, Mingxuan Yuan, Zili Shao
Machine Learning · Cross-listed from cs.NE
Benchmarking Fairness in Spiking Neural Networks: Data Bias, Spurious Features, and Hardware Effects
Hudi He, Fukun Wang, Zhe Wang et al. (+7 more)
Evaluating
fairness in Spiking Neural Networks (SNNs) demands rigorous
benchmarks that reflect real-world complexities, yet existing assessments remain limited by superficial
dataset diversity and idealized hardware assumptions. This work introduces the first systematic
fairness benchmark for SNNs, addressing three critical dimensions of realism: (1) demographic coverage gaps in training data, (2) spurious feature leakage (e.g., skin tone as a proxy for class labels), and (3) deployment-environment mismatches (e.g., edge devices with constrained spike encoding). Our framework integrates four cross-demographic
datasets with controlled bias injections and three neuromorphic hardware simulators (Loihi 2, SpiNNaker), enabling isolated analysis of
fairness-performance trade-offs under resource constraints. Standardized evaluations of 12 state-of-the-art SNNs reveal stark disparities: models trained on biased data exhibit 23% higher false positive rates for underrepresented groups, while hardware limitations (e.g., reduced spike precision) further amplify accuracy gaps by up to 41% in edge deployments. Critically, bias mitigation strategies developed for cloud-based SNNs often degrade under resource constraints, highlighting the need for co-design principles that jointly optimize
fairness and hardware efficiency. By bridging algorithmic
fairness research with neuromorphic engineering, our
benchmark provides a foundation for trustworthy SNNs in socially critical applications such as healthcare and autonomous systems. Our code is available at: https://anonymous.4open.science/r/SNN-
Benchmarks-8017.
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All authors Hudi He, Fukun Wang, Zhe Wang, Xinyi Wang, Shuhan Ye, Jiarui Liu, Qing Qing, Ziqi Xu, Xikun Zhang, Renqiang Luo
Machine Learning · Cross-listed from q-bio.MN
Graph neural network explanations reveal a topological signature of disease-associated hubs in biological networks
Kyle Higgins, Ivan Laponogov, Dennis Veselkov et al. (+1 more)
Graph neural networks (GNNs) are increasingly used to model biological systems, yet the reliability of post-hoc explanation methods for recovering meaningful molecular mechanisms remains unclear. Here, we systematically evaluate four widely used approaches: Saliency Attribution (SA), Integrated Gradients (IG), GNNExplainer, and Layer-wise Relevance Propagation (LRP) for identifying disease-relevant structure in breast cancer RNA-seq data projected onto a
protein-
protein interaction network. Using synthetic
benchmarks with known ground-truth motifs, we show that explanation methods recover distinct signal organizations: SA performs best for sparse single-node drivers, whereas IG and LRP preferentially recover distributed pathway-like and cascade-like signals. In TCGA BRCA data, we identify a consistent topological signature of disease-associated hubs in which attribution peaks in the immediate 1-hop neighborhood and decays across successive network shells, a pattern most pronounced for IG and LRP and associated with strong enrichment of known cancer hubs. We further observe a trade-off between local hub enrichment and global gene ranking performance, with IG optimizing local enrichment and SA achieving superior global discrimination. Motivated by these complementary behaviors, we introduce a framework combining a shell-based hub score with consensus ranking across explainers. Consensus scores improve prioritization of canonical cancer genes (TP53, BRCA1, ESR1, MYC), reduce dependence on node degree, and, especially when tuned, outperform individual methods. Pathway enrichment further reveals improved recovery of biologically coherent cancer programs, including ERBB2, RTK, MAPK, immune, and cytokine signaling. Together, these results demonstrate that
topology-aware integration of graph explanations can improve biological interpretability and biologically relevant molecular recovery.
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All authors Kyle Higgins, Ivan Laponogov, Dennis Veselkov, Kirill Veselkov
Machine Learning
Augmenting Human Evaluation with LLM Judges: How Many Human Reviews Do You Need?
Jane Paik Kim
Large
language models (LLMs) are increasingly used as automated evaluators of AI systems, including in high-stakes applications. In this role, LLMs are used to generate judgments about the quality, appropriateness, or even safety of model outputs. This approach is motivated by practical constraints. Expert human ratings are costly and difficult to scale, whereas LLM ratings can be produced quickly at low cost. However, current approaches to deploying LLM evaluators are ad hoc, typically limited to reporting agreement metrics between human and LLM judges as a justification for substitution of human ratings, and lack a formal basis for study design. This paper (1) shifts the role of the LLM judge from substitutive to auxiliary, and (2) formulates the LLM-as-a-judge paradigm as one of augmenting human evaluation through a two-stage sampling design, where LLM evaluations are measured for all observations at the first stage and human ratings are partially observed for a subsample at the second stage. We propose to use a doubly robust
estimator from the missing data literature, which takes advantage of the robustness property against the prediction model, since the missingness model is known by design. Using the asymptotic variance of this
estimator, we propose how sample sizes of human and LLM ratings can be determined to achieve a targeted level of power. We also show that a study can be efficiently designed by allocating more human ratings for types of evaluations where the predictability of LLM ratings is not high. To the best of our knowledge, there is very little guidance on how much human oversight should be retained when validating
benchmarks.
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Machine Learning · Cross-listed from cs.IR
LARGER: Lexically Anchored Repository Graph Exploration and Retrieval
Yuntong Hu, Tongli Su, Liang Zhao et al. (+2 more)
Repository-level coding
agents must first localize the files and symbols relevant to a task; failures at this stage can cascade across downstream objectives ranging from patch generation to test writing and codebase question answering. Existing
agents navigate repositories primarily through lexical search, often missing structural relations such as imports, call chains, type hierarchies, and code-test links. Graph-based
retrieval can recover such dependencies, but existing approaches often require separate graph tools or traversal stages that fragment the
agent's interaction loop. We formalize repository context localization as Lexically Anchored Structural Localization, where success depends on turning lexical matches into high-precision structural entry points and exposing the most useful confidence-filtered local neighborhoods within the
agent's existing search loop. We introduce LARGER (Lexically Anchored Repository Graph Exploration and
Retrieval), a lexically anchored active-set
retrieval framework that starts from lexical matches, aligns them to graph anchors, and performs confidence-filtered local expansion within the
agent's existing search loop. LARGER integrates directly into existing CLI coding
agents without requiring external graph databases or specialized graph interfaces. Across four
benchmarks spanning localization, test generation, and codebase understanding, LARGER improves file-level Acc@5 on LocBench by +13.9 points with tuned hyperparameters and still gains +11.8 points with fixed hyperparameters over the strongest baseline, while delivering consistent gains on MuLocBench, SWE-Atlas Test Writing, and SWE-Atlas Codebase QA.
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All authors Yuntong Hu, Tongli Su, Liang Zhao, Bowen Zhu, Hasibul Haque
Machine Learning
PALM: Physically-Anchored Latent-timescale Mamba for Stable Representations under Distribution Shift
Sangyoon Bae, Shinjae Yoo and Jiook Cha
Scientific foundation models are built to reuse representations across
datasets and acquisition protocols, yet their representations degrade under distribution shift. We trace one source of this failure to selective state-space models (SSMs). Their
memory depends on the step Delta and the state
matrix A only through their product, so data do not identify the physical timescale of
memory, and under a shift the resulting
memory no longer matches the signal's timescales. We call this failure
memory-timescale misalignment. To resolve it, the split between Delta and A must be tied to physical units. We therefore propose Physically-Anchored Latent-timescale Mamba (PALM), which disentangles A from Delta by anchoring both to acquisition units: Delta through spectrum-estimated knee frequencies and A through a physical
memory range. We evaluate PALM against parameter-matched baselines in two domains, under temporal-context truncation, low-resource transfer, and
brain-state shift on fMRI and under held-out-station
forecasting on Weather-5K. Under fMRI context truncation with run-level spectral calibration, PALM keeps its latent timescales in physical units and retains 11% higher representation similarity than Mamba2. At geographically isolated weather stations never seen during training, PALM achieves the lowest error on every variable and horizon, 15.2% below the best baseline on average, and outperforms zero-shot
forecasting foundation models. Across both domains, the gains come from where the backbone places
memory in physical time rather than from model size. We therefore argue that physically anchored latent timescales are a design requirement for scientific foundation models that must transfer across acquisition conditions.
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Machine Learning
Federated Nested Learning: Collaborative Training of Self-Referential Memories for Test-Time Adaptation
Hong Chen, Pengcheng Wu, Yuanguo Lin et al. (+4 more)
We rethink
Federated Learning (FL) from a nested learning perspective, framing the core challenge as how to collaboratively learn optimization rules, not just static models, to tackle Non-IID client data. To address this, we propose
Federated Nested Learning (FedNL), a novel framework that reformulates FL as a three-level nested optimization system. FedNL embeds Titans-based linear
attention into FL, enabling clients to perform lightweight, zero-shot test-time adaptation by treating a delta rule as an online gradient step. Experiments on Non-IID MMLU and long-context
benchmarks show that FedNL achieves competitive performance in short-context
reasoning, enhances the performance of long-context
retrieval and streaming Cross-
Entropy, and maintains constant inference
memory.
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All authors Hong Chen, Pengcheng Wu, Yuanguo Lin, Peilin Zhao, Xiuze Zhou, Fan Lin, Han Yu
Machine Learning
Geometric Asymmetry in MoE Specialization: Functional Decorrelation and Representational Overlap
Feilong Liu
Mixture-of-Experts (MoE) architectures achieve scalable capacity through sparse routing, yet the
geometric structure of expert specialization remains poorly understood. We introduce a unified Jacobian-PCA-Grassmann framework for analyzing MoE layers in both function space and representation space. Across pretrained MoE
Transformers (Mistral, Qwen), we find a consistent structural asymmetry: experts exhibit strong functional decorrelation (consistently low, near-zero cross-expert Jacobian
alignment) while their routed representations occupy distinct but partially overlapping subspaces. This indicates that functional decorrelation and representation overlap coexist rather than coincide in MoE specialization. Controlled routing experiments further indicate that routing sparsity appears to be a key factor shaping this geometry: top-k routing induces sharper functional separation and larger subspace divergence, whereas fully soft routing yields more entangled expert structure. Together, these results suggest a
geometric interpretation in which MoE layers may be viewed as implementing locally decorrelated operators over overlapping submanifolds on a shared representation
manifold, and provide a general diagnostic framework for studying conditional computation in modern
Transformer architectures.
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Machine Learning
Flow-Direct: Feedback-Efficient and Reusable Guidance for Flow Models via Non-Parametric Guidance Field
Kim Yong Tan, Yueming Lyu, Ivor Tsang et al. (+1 more)
Training-free guidance enables pre-trained
diffusion and flow models to optimize application-specific objectives using feedback from external black-box reward functions. However, existing methods are feedback-inefficient because reward feedback is used only transiently to inform a localized gradient approximation or a discrete search decision, and is subsequently discarded. To address this limitation, we propose Flow-Direct, a framework that guides the generation process via a persistent guidance field. Theoretically, this guidance field is analytically derived from the log-density ratio between the base and reward-weighted target distributions; it transports the pre-trained distribution to the target distribution. In practice, the field is implemented as a non-parametric
estimator constructed from all accumulated reward-evaluated samples. As more samples are collected during optimization, this empirical guidance field becomes increasingly accurate. This persistent formulation yields two major advantages. First, Flow-Direct is highly feedback-efficient: because every evaluated sample is used to refine the global guidance field, no reward information is wasted. Second, the framework is naturally reusable: once optimization is complete, the collected
dataset defines a reusable guidance field for generating novel target samples without additional reward evaluations, and distinct guidance fields can be combined to generate samples that simultaneously satisfy multiple objectives.
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All authors Kim Yong Tan, Yueming Lyu, Ivor Tsang, Yew-Soon Ong
Machine Learning
HPC-LLM: Practical Domain Adaptation and Retrieval-Augmented Generation for HPC Support
Nourin Shahin and Izzat Alsmadi
Modern scientific research increasingly depends on High-Performance Computing (HPC) infrastructures, yet many researchers face significant operational barriers when interacting with cluster environments, job schedulers, GPU resources, and parallel computing frameworks. General-purpose large
language models (LLMs) provide useful coding assistance but often lack the domain-specific operational knowledge required for reliable HPC support. This paper presents HPC-LLM, a
retrieval augmented and domain-adapted assistant designed to support common HPC workflows including Slurm scheduling, MPI execution, GPU utilization, filesystem management, and cluster troubleshooting. The proposed framework integrates automated documentation ingestion, dense
retrieval, lightweight domain adaptation using QLoRA, and local inference within a modular orchestration pipeline. To support domain adaptation, we construct an HPC-oriented corpus from publicly available university HPC documentation, curated operational examples, and synthetic instruction-answer pairs generated from retrieved HPC content. The resulting
dataset contains approximately 9,000 to 24,000 HPC-focused training examples spanning job scheduling, GPU computing, distributed training, storage systems, and cluster administration topics. We fine-tune Llama 3.1 8B using QLoRA and evaluate the resulting model against several open weight baselines under
retrieval-augmented settings on JetStream2 infrastructure. Experimental results indicate that the adapted 8B model achieves performance comparable to substantially larger general-purpose models while operating under significantly lower GPU
memory requirements and inference latency. In particular, the adapted model approaches the performance of Qwen 2.5 14B while requiring substantially fewer computational resources.
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Machine Learning
PropGuard: Safeguarding LLM-MAS via Propagation-Aware Exploration and Remediation
Bingyu Yan, Xiaoming Zhang, Jinyu Hou et al. (+4 more)
LLM-based multi-
agent systems (LLM-MAS) have become a promising paradigm for solving complex tasks through role specialization, tool use,
memory, and collaborative
reasoning. However, these interactions create new security risks that malicious instructions injected through messages, tools, or
memories can propagate across
agents and rounds, causing system-level compromise. Existing defenses largely rely on local filtering or graph-based anomaly detection, but they often fail to trace fine-grained propagation paths or remediate contaminated states without disrupting benign collaboration. We propose PropGuard, a propagation-aware framework for safeguarding LLM-MAS. PropGuard constructs a dual-view spatio-temporal graph that combines response-centric risk estimation with full-state evidence preservation. Guided by these risk priors, a GE-GRPO trained inspector sequentially explores the full-state graph to recover compact suspicious propagation subgraphs. PropGuard then verifies harmful propagation through subgraph-aware diagnosis and applies source-guided remediation to correct upstream contamination and replay affected downstream interactions. Experiments across four communication architectures and five attack settings demonstrate that PropGuard consistently lowers attack success while maintaining high task-level defense success, achieving a favorable effectiveness–efficiency trade-off.
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All authors Bingyu Yan, Xiaoming Zhang, Jinyu Hou, Chaozhuo Li, Ziyi Zhou, Xiaozhe Zhang, Litian Zhang
Machine Learning
Goal-Conditioned Supervised Learning for LLM Fine-Tuning
Shijun Li, Kaiwen Dong, Xiang Gao et al. (+1 more)
Large
language models often require fine-tuning to better align their behavior with user intent at deployment. Existing approaches are commonly divided into online and offline paradigms. Online methods, such as RL-based
alignment, can directly optimize outcome quality but typically rely on external reward models and iterative rollouts, making them costly and difficult to deploy in many cases. Offline methods are more efficient, but prevailing approaches such as supervised fine-tuning (SFT) and direct preference optimization (DPO) remain limited: SFT typically collapses graded feedback into binary supervision, while DPO depends on paired preference data that is often unavailable or expensive to construct. In this paper, we propose goal-conditioned supervised learning (GCSL) as an offline fine-tuning framework for LLMs. Our core idea is to treat feedback signals directly as an explicit goal and train the model, purely through supervised learning, to generate responses that achieve that goal. To better exploit graded feedback, we further introduce a novel goal formulation that defines learning as consistently pursuing outcomes above a target quality threshold, rather than imitating samples from a selected high-quality subset. This design mitigates the bounded-learning effect by learning transferable patterns of meeting or exceeding quality thresholds. We also propose natural-
language goal representations to further connect these patterns to the LLM's pretrained knowledge and generalization capabilities. We evaluate our method on three tasks: non-toxic generation, code generation, and LLM for recommendation. Results show that our approach consistently outperforms standard offline fine-tuning baselines while retaining the efficiency, scalability, and simple data requirements of supervised learning.
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All authors Shijun Li, Kaiwen Dong, Xiang Gao, Joydeep Ghosh
Machine Learning · Cross-listed from cs.IR
A Production-Ready RL Framework for Personalized Utility Tuning with Pareto Sweeping in Pinterest Recommender Systems
Yichu Zhou, Mehdi Ben Ayed, Lin Yang et al. (+9 more)
Large-scale recommenders encode multi-objective trade-offs by combining multiple predicted outcomes into a single utility score. Although this utility layer can be updated independently of the ranker, weight tuning remains largely manual, globally applied, slow to adapt to changing environments and business needs, and hard to govern as priorities shift. We propose PRL-PUTS, a Production-ready, ranker independent RL framework for Personalized Utility-weight Tuning with Pareto Sweeping. We cast utility tuning as a one-step, value-based RL problem: given request context, an
agent selects a utility-weight vector that re-weights ranker predictions to maximize request-level engagement rewards. To visualize performance across the trade-off spectrum and allow decision makers to update the deployed operating policy instantly, we adopt an inference-time Pareto frontier sweeping via a scalarization parameter, producing a family of policies and an empirical Pareto frontier used as a governance artifact for operating policy selection. PRL-PUTS runs in parallel with ranking inference without adding serving latency. We validate PRL-PUTS with offline analysis using unbiased exploration logs and online experiments on Pinterest Homefeed where PRL-PUTS showed significant increases in engagement compared to baseline such as +0.13% increase in successful session, a core metric for user engagement.
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All authors Yichu Zhou, Mehdi Ben Ayed, Lin Yang, Jiacong He, Andreanne Lemay, Jiaye Wang, Jaewon Yang, Josie Zeng, Dhruvil Deven Badani, Yijie Dylan Wang, Jiajing Xu, Charles Rosenberg
Machine Learning
LoopQ: Quantization for Looped Language Models
Rui Fang, Hsi-Wen Chen, Chia-Ming Cheng et al. (+1 more)
Looped
language models (LoopLMs) increase effective computational depth by repeatedly applying shared
Transformer blocks without increasing the parameter count. However, this reuse makes them particularly sensitive to post-training quantization (PTQ). We systematically study PTQ in LoopLMs and identify three sources of degradation: distribution shift across roles, state reuse across loop transitions, and recursive error accumulation. We propose LoopQ, a loop-aware PTQ framework that preserves a shared quantized backbone while introducing lightweight adaptations. LoopQ combines loop-aware activation scaling and selective transformations to accommodate changing hidden-state distributions, cross-loop state
alignment to stabilize transitions, and trajectory-aware calibration to limit accumulated error. Under W4A4 quantization, LoopQ achieves a 67.8% average relative improvement in five-task mean accuracy across four backbones and a conservative estimate of 75.2% for the average relative perplexity reduction across eight backbone-
dataset pairs, compared with the strongest static PTQ baseline for each comparison.
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All authors Rui Fang, Hsi-Wen Chen, Chia-Ming Cheng, Ming-Syan Chen
Machine Learning
DACA-GRPO: Denoising-Aware Credit Assignment for Reinforcement Learning in Diffusion Language Models
Amin Karimi Monsefi, Dominic Culver, Nikhil Bhendawade et al. (+4 more)
Diffusion large
language models are a compelling alternative to autoregressive models, yet existing RL methods for
diffusion treat all denoising steps as equally important and rely on biased, high-variance likelihood estimates. We identify two fundamental weaknesses: the absence of temporal credit assignment across the denoising trajectory, and the systematic bias of mean-field likelihood estimates used for policy optimization. To address these, we propose Denoising-Aware Credit Assignment for GRPO (DACA-GRPO), a lightweight, plug-and-play enhancement for any GRPO-style trainer. DACA-GRPO introduces two complementary mechanisms: Denoising Progress Scores, which extract per-
token importance weights from intermediate predictions at no additional forward cost, and Stratified Masking Likelihood, which partitions
token positions into strata so that each
token is predicted with most of the sequence as context, reducing the mean-field bias. Applied on top of three GRPO base methods, DACA-GRPO achieves consistent improvements across seven
benchmarks spanning mathematical
reasoning, code generation, constraint satisfaction, and constrained generation, with gains of up to 5.6pp on math
reasoning, 7.4pp on code generation, 36.3pp on constraint satisfaction, and 5.9pp on JSON schema adherence.
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All authors Amin Karimi Monsefi, Dominic Culver, Nikhil Bhendawade, Lokesh Boominathan, Manuel R. Ciosici, Yizhe Zhang, Irina Belousova
Machine Learning
Hierarchical Multi-Scale Graph Neural Networks: Scalable Heterophilous Learning with Oversmoothing and Oversquashing Mitigation
Md Sazzad Hossen and Avimanyu Sahoo
Graphs with heterophily, where adjacent nodes carry different labels, are prevalent in real-world applications, from social networks to molecular interactions. However, existing spectral Graph Neural Network (GNN) approaches tailored for heterophilous graph classification suffer from hub-dominated (node with large degree) aggregation and oversmoothing, as their suboptimal
polynomial filters introduce approximation errors and blend distant signals. To address the degree-biased aggregation and suboptimal
polynomial filtering, we introduce a Hierarchical Multi-view HAAR (HMH), a novel spectral graph-learning framework that scales in near-linear time . HMH first learns feature- and structure-aware signed affinities via a heterophily-aware encoder, then constructs a soft graph hierarchy guided by these
embeddings. At each hierarchical level, HMH constructs a sparse, orthonormal, and locality-aware Haar basis to apply learnable spectral filters in the frequency domain. Finally, skip-connection unpooling layers combine outputs from all hierarchical levels back into the original graph, effectively preventing hub domination and long-range signal bottleneck (over-squashing). Experimentation shows that HMH outperforms state-of-the-art spectral baselines, achieving up to a 3% improvement on node classification and 7% points on graph classification
datasets, all while maintaining linear scalability.
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Machine Learning
Vertex-Softmax: Tight Transformer Verification via Exact Softmax Optimization
Navid Rezazadeh and Arash Gholami Davoodi
Certified verification of
transformer attention requires bounding the softmax function over interval constraints on the pre-softmax scores. Existing verifiers relax softmax ndependently of the downstream objective, leaving avoidable slack. We prove that the exact optimum of this score-box problem is attained at a vertex of the constraint box, and establish a threshold structure
theorem showing that, after sorting the objective coefficients, the optimum lies among only linearly many candidates, yielding the Vertex-Softmax primitive with log-linear complexity in the sequence length. We further prove a formal optimality result showing that Vertex-Softmax is the tightest sound bound obtainable from score intervals alone, characterizing precisely what additional structure (score correlations, score-value coupling) is needed for further improvement. Integrated into a CROWN Convex Relaxation based Optimization for Worst-case
Neurons)-style verifier with a formal soundness guarantee, Vertex-Softmax significantly improves certified rates and substantially tightens lower bounds across MNIST, Fashion-MNIST, and CIFAR-10
attention models, while consistently matching or outperforming alpha-CROWN and branch-and-bound baselines at a fraction of their cost.
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Machine Learning
Rotation-Preserving Supervised Fine-Tuning
Hangzhan Jin, Tianwei Ni, Lu Li et al. (+3 more)
Supervised fine-tuning (SFT) improves in-domain performance but can degrade out-of-domain (OOD) generalization. Prior work suggests that this degradation is related to changes in dominant singular subspaces of pretrained weight
matrices. However, directly identifying loss-sensitive directions with Hessian or Fisher information is computationally expensive at LLM scale. In this work, we propose preserving projected rotations in pretrained singular subspaces as an efficient proxy for Fisher-sensitive directions, which we call Rotation-Preserving Supervised Fine-Tuning (RPSFT). RPSFT penalizes changes in the projected top-$k$ singular-vector block of each pretrained weight
matrix, limiting unnecessary rotation while preserving task adaptation. Across model families and sizes trained on math
reasoning data, RPSFT improves the in-domain/OOD trade-off over standard SFT and strong SFT baselines, better preserves pretrained representations, and provides stronger initializations for downstream RL fine-tuning. Code is available at \href{https://github.com/jinhangzhan/RPSFT.git}{https://github.com/jinhangzhan/RPSFT}.
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All authors Hangzhan Jin, Tianwei Ni, Lu Li, Pierre-Luc Bacon, Mohammad Hamdaqa, Doina Precup
Machine Learning
Steering Without Breaking: Mechanistically Informed Interventions for Discrete Diffusion Language Models
Hanhan Zhou, Shamik Roy and Rashmi Gangadharaiah
Discrete
diffusion language models (DLMs) generate text by iteratively denoising all positions in parallel, offering an alternative to autoregressive models. Controlled generation methods for DLMs, imported from autoregressive models, apply uniform intervention at every denoising step. We show this uniform schedule is inefficient and degrades quality, and the damage compounds when multiple attributes are steered jointly. To diagnose the failure, we train sparse autoencoders on four DLMs (124M-8B parameters) and find that different attributes commit on distinct schedules, varying in timing, sharpness, and magnitude. For instance, topic commits within the first 2% of denoising on MDLM, whereas sentiment emerges gradually over 20% of the process. Motivated by these profiles, we propose an adaptive scheduling mechanism that concentrates intervention where each attribute is actively forming. An idealized allocation analysis predicts that attributes with more sharply concentrated emergence benefit more from adaptive scheduling, a prediction we confirm empirically. Across seven single- and multi-attribute steering tasks on four DLMs, adaptive steering consistently improves the control-quality balance over uniform and interval-restricted baselines.
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Machine Learning · Cross-listed from cs.CV
MicroDiffuse3D: A Foundation Model for 3D Microscopy Imaging Restoration
Yongkang Li, Brian Wong, King Wai Chiu et al. (+5 more)
Chemical imaging enables label-free visualization of
cells, tissues and living systems while providing direct biochemical information that is difficult to obtain with conventional fluorescence microscopy. Despite its promise in applications ranging from intraoperative diagnosis to drug-response analysis, its broader use remains limited by slow data acquisition, particularly for three-dimensional imaging. Here we present MicroDiffuse3D, a pretrained foundation model for 3D microscopy image restoration that recovers high-quality volumetric structure from degraded low-resolution measurements acquired at substantially higher throughput. We evaluated MicroDiffuse3D across three challenging restoration settings, including 3D super-resolution under 16-fold volumetric sparsity, joint degradation in resolution and noise, and 3D denoising in the low signal-to-noise ratio (SNR) regime, where the model delivered clear gains over strong baselines. Under the sparse 3D super-resolution setting, MicroDiffuse3D produced clearer continuity across depth with fewer artifacts and improved
segmentation quality by 10.58% and line-profile concordance by 15.59%. Together, our results establish pretrained 3D restoration as a broadly applicable strategy for overcoming the throughput and SNR limitations in volumetric chemical imaging, enabling high-resolution analysis at scales and speeds that were previously difficult to achieve.
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All authors Yongkang Li, Brian Wong, King Wai Chiu, Hanwen Xu, Tangqi Fang, Erin Dunnington, Dan Fu, Sheng Wang
Machine Learning
Finer is Better (with the Right Scaling)
Clemens Schaefer and Gil Tabak
Microscaling is a critical technique for preserving the quality of Large
Language Models (LLMs) quantized to ultra-low precision formats. Intuitively, finer block sizes should yield lower quantization error; however, a paradox recently identified by Fasoli et al. (2026) demonstrates that standard abs-max scaling can actually result in degraded model quality as block sizes shrink. In this work, we investigate the underlying mechanics of this phenomenon. We demonstrate that this degradation is not an inherent limitation of finer granularity, but is primarily driven by how elements in smaller blocks statistically cluster closer to their local block maximum, interacting poorly with the coarse subnormal E4M3 values used as scaling factors. Specifically, we show that i) preventing the scaling factor from underflowing to zero mitigates errors caused by extreme underflow, ii) targeted algorithmic interventions like the 4-over-6 methodology that give more flexibility to the choice of scaling factor resolve the paradox for larger values, and iii) a brute-force search establishes an optimal baseline, confirming that the theoretical Mean Squared Error (MSE) strictly improves with finer block sizes. Ultimately, our findings highlight a critical insight for hardware-software co-design: the block-size paradox is partially an artifact of naive scale selection. While using hierarchical scaling factors or wider formats like UE5M3 interchangeably resolves much of the quality loss, we found the 4-over-6 scale selection heuristic can even further improve quality, especially for very small block sizes. Consequently, maximizing the performance of next-generation ML accelerators will require treating silicon format specifications and software scaling
algorithms as tightly coupled design choices.
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Machine Learning · Cross-listed from cs.AI
Biological Plausibility and Representational Alignment of Feedback Alignment in Convolutional Networks
Jake Lance and Larry Kieu
The feedback
alignment (FA)
algorithm offers a biologically plausible alternative to backpropagation (BP) for training neural networks yet notably fails to scale to convolutional architectures. Modifications have been proposed to address this limitation, but at questionable cost to biological plausibility. In this paper, we evaluate five learning
algorithms including modified FA and standard BP, applied to the same convolutional architecture with the CIFAR-10
dataset. We provide a tripartite comparative analysis focusing on biological plausibility, interpretability, and computational complexity. Our results indicate that modified FA
algorithms converge on internal representations that are structurally similar to those produced by backpropagation. In particular, it appears the functional success of modified FA
algorithms may be rooted in their ability to mimic the representational geometry of backpropagation, converging on similar representations despite relying on fundamentally different weight update mechanisms.
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Machine Learning · Cross-listed from stat.ML
CONTRA: Conformal Prediction Region via Normalizing Flow Transformation
Zhenhan Fang, Aixin Tan and Jian Huang
Density estimation and reliable prediction regions for outputs are crucial in supervised and unsupervised learning. While conformal prediction effectively generates coverage-guaranteed regions, it struggles with multi-dimensional outputs due to reliance on one-dimensional nonconformity scores. To address this, we introduce CONTRA: CONformal prediction region via normalizing flow TRAnsformation. CONTRA utilizes the latent spaces of normalizing flows to define nonconformity scores based on distances from the center. This allows for the mapping of high-density regions in latent space to sharp prediction regions in the output space, surpassing traditional hyperrectangular or elliptical conformal regions. Further, for scenarios where other predictive models are favored over flow-based models, we extend CONTRA to enhance any such model with a reliable prediction region by training a simple normalizing flow on the residuals. We demonstrate that both CONTRA and its extension maintain guaranteed coverage probability and outperform existing methods in generating accurate prediction regions across various
datasets. We conclude that CONTRA is an effective tool for (conditional) density estimation, addressing the under-explored challenge of delivering multi-dimensional prediction regions.
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Machine Learning · Cross-listed from math.FA
Structure-Preserving Reconstruction of Convex Lipschitz Functionals on Hilbert Spaces from Finite Samples
Anastasis Kratsios
Convex functionals are ubiquitous in applied analysis, appearing as value functions, risk measures, super-hedging prices, and loss functionals in machine learning. In many applications, however, the functional is only observed through finitely many exact pointwise evaluations. We ask whether a convex functional on a separable
Hilbert space $H$ can be reconstructed, up to arbitrary uniform accuracy, by an explicit formula which preserves convexity and Lipschitz regularity and is finitely computable. We answer this affirmatively. For every compact convex $C\subseteq H$, every $L$-Lipschitz convex functional $\rho:C\to\mathbb{R}$, and every $\varepsilon>0$, we construct an explicit finite-sample reconstruction which is convex, $L$-Lipschitz, and uniformly $\varepsilon$-accurate on $C$. The construction uses only finitely many linear measurements $\langle b,\cdot\rangle_H$, with $b$ lying in a finite-dimensional subspace of $H$, and is exactly implementable by a $\operatorname{ReLU}$-MLP. Building on this, we introduce convex neural functionals (CNFs), a structured trainable architecture class containing our reconstruction, whose every admissible parameter configuration is automatically convex and Lipschitz, providing a principled foundation for learning convex functionals from finite data.
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