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Friday 9 October

Machine Learning · Cross-listed from stat.ML

Model-free Bayesian Clustering and Multimodal Posterior Summarisation

We develop a model-free, noise-aware Bayesian clustering framework that constructs a martingale posterior over clusterings from a predictive Bayesian perspective. This avoids explicit likelihood-prior model specification, expensive MCMC sampling, and mode-seeking variational approximations, while accommodating irregular cluster shapes and enabling parallel generation of posterior draws. To interpret the posterior over high-dimensional, noise-aware clusterings, we introduce a Wasserstein-type summarization method. Using a novel noise-aware loss, this approach compresses the large collection of posterior draws into a small set of weighted representatives, capturing distinct cluster structures and noise assignments. Further, we marginalise the uncertainty in the density level, avoiding reliance on a specific choice. We establish theoretical properties of the proposed loss and guarantees for the level-marginal posterior approximation. Results demonstrate the framework's effectiveness in capturing clustering and noise uncertainty.
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Machine Learning

PlacePulse: Learning Transferable Place Representations from Structural Geographic Data

Geospatial machine learning often depends on task-specific feature engineering over large collections of sociodemographic, business, and environmental variables. Geospatial foundation models offer reusable representations of place, but leading approaches typically encode dynamic signals, such as mobility and search activity, or visual signals from satellite imagery. Few models represent the static structural composition of places (who lives and works there, which businesses operate there, and which risks they face) as transferable embeddings at fine spatial resolution. We introduce PlacePulse, a structural geospatial foundation model that compresses 572 attributes, expanded to 2,288 inputs through H3 neighborhood aggregates, into 256-dimensional unit-norm embeddings for 1,055,537 H3 resolution-7 cells in the United States. We also introduce a reusable two-axis benchmark that separates intrinsic representation quality from downstream predictive utility across multiple targets and spatial supports. Intrinsically, the embeddings reconstruct standardized inputs with mean $R^2 = 0.853$, use 251 of 256 approximately decorrelated dimensions, and show strong spatial organization, with Moran's $I = 0.93$ on the leading principal component and autocorrelation persisting beyond the input radius. Extrinsically, across 74 held-out targets from 12 external sources and four spatial supports, PlacePulse outperforms a dimensionality-matched feature-selection baseline on targets unrelated to the training inputs and is competitive with Google's Population Dynamics Foundation Model, leading on health, economic, election, economic-mobility and social-vulnerability outcomes, with relative strengths that vary by domain. These findings position structural composition as a distinct and complementary modality for geospatial foundation models, not simply a fallback where behavioral or imagery data are unavailable.
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All authors Lucía García-Duarte, Miguel Álvarez, Diego Vicente, Javier Pérez Trufero, Javier de la Torre

Machine Learning

BLOKS: Scaling Kernel Solvers with Sketched Block Preconditioning

Kernel Ridge Regression (KRR) is a theoretically sound algorithm for nonparametric learning, which is also often used to investigate properties of deep learning. However, the exact KRR formulation incurs time and memory costs preventing applicability to large datasets, motivating the development of approximate solvers. These algorithms rely on (i) iterative methods, to avoid the computational burden of direct solutions; (ii) sketching or batching, to reduce the problem size; and (iii) preconditioning, to accelerate convergence. While crucial for fast convergence, preconditioning incurs memory costs that can be managed by lowering the number of free parameters of the model, potentially at the expense of expressivity and hence accuracy. To address this challenge, we propose BLOKS, a Conjugate Gradient-based solver for Nyström-sketched KRR built around a novel preconditioner that combines a block Jacobi approximation with sketching. The BLOKS preconditioner has memory cost independent of both the dataset size and the number of parameters, allowing scaling to large models. We provide a memory-efficient, GPU-accelerated implementation and show that BLOKS achieves excellent accuracy while retaining favorable time/memory complexity. Indeed, on standard large-scale datasets used to benchmark kernel solvers, BLOKS achieves comparable or better performances than state-of-the-art methods.
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All authors Giordano Vitale, Giacomo Meanti, Marco Rando, Blanca Ayuso de Dios, Lorenzo Rosasco

Machine Learning · Cross-listed from cs.CL

Overcoming Data Imbalances with Expert Selection Biases

Mixture-of-Experts (MoE) models have become the standard architecture for frontier LLMs. The multiple parallel experts in each transformer block theoretically enable expert specialization according to categories such as domains, languages, or modalities during pretraining. However, when data is imbalanced across categories, minority categories can become concentrated in a small fraction of the expert pool or spread inefficiently across them, effectively limiting their available capacity. In this work, we demonstrate that category-conditioned expert-selection biases can preferentially route tokens from different categories toward specialized expert pools. By applying biases based on input category, we provide a simple way to induce soft category-aligned specialization. This intervention encourages categories toward distinct expert subsets while retaining cross-category sharing when useful. More importantly, it enables the over-allocation of expert capacity to categories that would otherwise be disadvantaged by data scarcity. We observe performance improvements across modalities, low-resource languages, and code in models up to 10.6B parameters. At our smallest and largest model scales, these gains are equivalent to allocating 18.5% and 2.7% additional baseline training tokens, respectively. Overall, our results show that expert biases can serve as a lightweight control for category-level expert allocation, making room for low-resource categories while retaining standard MoE inference.
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Machine Learning

Opening the Black Box of Classifier-Free Guidance via Information Bottleneck

Classifier-free guidance (CFG) is a standard technique for improving conditional generation in diffusion models, yet its activation schedule is usually selected heuristically. In practice, most existing CFG-based methods rely on a pre-defined activation policy throughout inference, while recent dynamic variants often depend on hand-designed schedules without a principled theoretical explanation of when conditional information is most useful. In order to understand how the informational relevance between conditioning inputs and the score function evolves over the course of generation, we explore when guidance should be activated from an information-theoretic perspective. In this work, we formulate the diffusion trajectory as a time-dependent information bottleneck and show that the effectiveness of conditional information is not uniform throughout sampling, but becomes significantly stronger after a critical stage characterized by a Fisher-information balance condition. Motivated by this insight, we propose a training-free dynamic CFG strategy for inference. Rather than prescribing a fixed schedule in advance, our method constructs a stochastic process from conditional and unconditional score statistics and activates guidance when the estimated guidance gain crosses a prescribed threshold. This yields an adaptive activation rule that aligns condition injection with the underlying generation dynamics, while also recovering interval-based guidance as a limiting special case. Extensive experiments across diverse architectures and tasks, demonstrate that our method is effective, robust, and broadly applicable. Beyond empirical improvements, our framework provides an interpretation of dynamic guidance methods and a principled foundation for inference-time control in conditional diffusion models.
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All authors Jiayang Gao, Tianyi Zheng, Jiayang Zou, Fengxiang Yang, Luyao Fan, Lv Tang, Bo Li, Jia Wang

Machine Learning · Cross-listed from cs.SE

AgentSWE: Can Coding Agents Build the Agent You Actually Want?

As the production of software passes into the hands of software itself, coding agents are increasingly commissioned to build agents fitted to their users' own workflows. This delegation carries a quiet assumption, that the delivered agent will faithfully serve the requirement it was built for, rather than merely appear to. No existing benchmark tests that assumption. We introduce AgentSWE, a benchmark for agent software engineering spanning three stages of the agent development lifecycle: Creation of a complete agent from a natural-language requirement, Editing of production agent codebases, and Optimization toward a measurable target. Each of its 25 tasks is framed as a commission rather than an exam: the builder iterates against a handful of illustrative cases, while acceptance exercises the frozen submission on held-out cases designed to span the full requirement, grading behavior against requirement-derived rubrics under hard pass/fail gates or, for Optimization, against the source benchmark's own objective. Evaluating a range of coding agents across models and harnesses, we find that none comes close to delivering what a requirement asks for: the gap between what a builder demonstrates and what it delivers is the norm, not the corner case. An accompanying empirical analysis of the failure trajectories identifies recurring failure modes, among them overfitting to the visible cases, hollow runtimes behind code that looks complete, and unsupported claims of completion, each a signal by which coding agents can learn to build the agents they are asked for.
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All authors Jiahao Wang, Hongjin Qian, Yuyang Hu, Jiajun Zhang, Zheng Liu

Machine Learning · Cross-listed from cs.MM

EmoGavel: Grounding-Aware Reinforcement Learning with Verifiable Rewards for Multimodal Emotion Preference Learning

Multimodal emotion preference learning uses pairwise comparisons to identify which open-ended emotion descriptions align more closely with human judgments. However, existing methods primarily focus on the final preference decision and provide little explicit supervision for localizing and correcting erroneous content. To address this limitation, we propose EmoGavel, a Grounding-Aware reinforcement learning framework with Verifiable rewards for multimodal Emotion preference Learning. We first introduce grounded supervised fine-tuning (Grounded SFT), which exploits controlled-error construction information to jointly learn preference prediction, error localization, repair, and missing-evidence recovery. We then optimize these verifiable outcomes with grounding-aware group relative policy optimization (GA-GRPO), combining preference-gated grounding rewards with dynamic zero-variance rescue to prioritize preference correctness and recover learning signals from all-wrong groups. Experiments on EmoPrefer and controlled-error evaluation sets show that EmoGavel improves both natural preference prediction and controlled-error discrimination while maintaining strong error-grounding performance. Our code and model checkpoints will be released once the paper is accepted.
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All authors Zilong Huang, Kong Aik Lee, Zezhong Jin, Man-Wai Mak, Tatsuya Kawahara

Machine Learning

Hidden Data Challenges in Clinical Machine Learning

Widely reused preprocessing pipelines for electronic health records can encode assumptions about when information became available, what clinical episode a label represents, and what missingness means. These assumptions are rarely audited systematically and may propagate across subsequent studies when preprocessing pipelines are reused or adapted. Using MIMIC-IV as a case study, we identify and quantify violations of three complementary forms of preprocessing alignment, i.e., temporal, semantic, and population alignment, which manifest as temporal leakage, feature-task misalignment, and biased imputation. We show how ambiguities in timestamp semantics, episode definitions, endpoint construction, modality selection, and missingness handling can alter the information available to a model and affect the interpretation of its predictions. Through analyses of MIMIC-IV data and empirical case studies, we demonstrate that such choices may remain largely invisible in aggregate predictive performance while changing the signals on which models rely. We derive practical recommendations for temporally valid, clinically aligned, and reproducible preprocessing of MIMIC-IV and related electronic health record datasets. The code for our experiments, including our proposed preprocessing, is available at: https://github.com/m2l-lab/mimic-iv-preprocess.
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All authors Carolin Cissée, Dennis Fast, Raneen Younis, Alexander Löser, Wolfgang Nejdl, Zahra Ahmadi

Machine Learning

Understanding Mamba-3 Through Oscillatory Dynamics

Mamba-3 introduces input-dependent rotations into recurrent state updates, but their contribution beyond state retention remains unclear. We interpret these rotations as underdamped second-order dynamics, providing a framework for investigating the role of oscillation in sequence modeling. Controlled comparisons show that underdamped dynamics outperform non-oscillatory damping regimes on state-tracking tasks, while language-model pretraining demonstrates benefits for long-context prediction and length generalization. Interventions in pretrained models further establish the importance of learned phase, and state analysis suggests that rotation regulates how retained information combines with incoming updates. Taken together, these findings identify underdamped dynamics as a useful mechanism for recurrent computation and suggest that oscillation supports long-context processing by regulating how information accumulates.
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Machine Learning

AgentTune: A Unified Training Lifecycle for Tool-Using LLM Agents

Tool-using agents increasingly require a common substrate for building, training, evaluating, distilling, and maintaining agentic systems, yet existing tooling typically addresses these stages in isolation. We present AgentTune, a source-available Python library that provides a unified framework for developing and optimizing tool-using agents. At its core, AgentTune introduces a two-tier EventLog representation that preserves agent trajectories while supporting consistent projections for training, evaluation, and auditing. Building on this substrate, the library provides a shared agent runtime, tool-calling reinforcement learning, agentic distillation, retrieval-augmented generation, decision workflows, evaluation utilities, and a designed path toward self-healing agents. These components are exposed through composable interfaces so that agent strategies, training methods, evaluation procedures, and recovery mechanisms can be combined without requiring separate representations or pipelines. We demonstrate the framework across agentic tasks including legal contract search and domain-specific applications, illustrating its use for trajectory-based optimization, tool-use evaluation, and cross-task agent development. AgentTune is released as a source-available library at https://github.com/Lexsi-Labs/AgentTune
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All authors R E Zera Marveen Lyngkhoi, Abhivansh Gupta, Vidushee Vats, Ram Mohan Rao Kadiyala, Vinay Kumar Sankarapu, Pratinav Seth

Machine Learning

PDE-PFN: Prior-Data Fitted Neural PDE Solver

Motivated by the success of large language models (LLMs) with broad generalizability and robustness to noisy or unreliable pre-training data, we explore in-context prediction of PDE solution fields using approximate pre-training data. In addition, inspired by the posterior predictive mean-based inference mechanism of the in-context learning in prior-data fitted networks (PFNs), we propose PDE-PFN, a prior-data fitted neural solver that approximates the posterior predictive mean of PDE solutions via in-context learning. PDE-PFN builds on a PFN architecture with self- and cross-attention mechanisms of Transformer and is pre-trained on noisy approximate solutions generated by physics-informed neural networks, serving as diverse but not necessarily exact priors. Through experiments on a range of two-dimensional PDEs, we demonstrate that PDE-PFN achieves empirical generalization across heterogeneous equations, robustness under noisy priors, and zero-gradient-update in-context inference capability. PDE-PFN achieves competitive or improved predictive accuracy relative to the evaluated baselines while supporting flexible context and query representations.
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All authors Jaehyeon Park, Mingu Kang, Dongseok Lee, Woojin Cho, Kookjin Lee, Anthony Gruber, Youngjoon Hong, Noseong Park

Machine Learning · Cross-listed from cs.AI

Masked Diffusion Language Agents for Tool-Integrated Chemical Reasoning

Designing tool-integrated reasoning agent systems for complex chemical tasks remains a fundamental challenge. Although recent chemical agents have demonstrated promising performance through the integration of external tools, they are still built on the autoregressive paradigm, which is inherently constrained by causal attention and left-to-right generation. As a result, they often struggle with bidirectional molecular understanding, global coordinated tool planning and multi-source evidence integration. To address this challenge, we introduce ChemDiffAgent, the first masked diffusion language agent for tool-integrated chemical reasoning. It reformulates chemical reasoning as iterative denoising over interleaved reasoning and tool-use trajectories, enabling tool-use decisions to be jointly determined under full-trajectory context and thereby better aligning the agent's decision boundary with its knowledge boundary. We further analyze how this paradigm benefits agentic reasoning through harder infilling subproblems during training and flexible arbitrary-order decoding during inference. Then we develop a two-stage post-training framework, comprising agentic supervised fine-tuning and variance-reduced preference optimization, to enhance tool-use and reasoning capabilities. We also construct a comprehensive benchmark covering six chemistry tasks across both single-turn and multi-turn tool-use scenarios. Under matched budgets and evaluation, ChemDiffAgent consistently outperforms autoregressive agents, achieving an overall improvement of approximately 20%. Notably, our 8B model achieves performance comparable to, in some cases surpassing, significantly larger frontier models, such as GPT 5.5 and Claude Opus 4.7. Code is available at https://github.com/bilemond/ChemDiffAgent.
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All authors Mengdi Liu, Chenghao Jia, Hong Chang, Shiguang Shan

Machine Learning

DuoRate: Two-Rate Per-Expert Precision Allocation for Mixture-of-Experts Serving

Serving a Mixture-of-Experts (MoE) model pays for expert precision twice: the resident footprint pays for every expert the router can reach, while each batch-one decode step pays only for the experts it selects. These are two different rate functionals over the same per-expert widths, yet published per-expert MoE allocators constrain only the first. We call the difference the store-read gap; in the released BitsMoE checkpoint, 2.54 bits per weight (bpw) of storage become 7.50 bpw of decode traffic. We propose DuoRate, which stores once and reads per workload. Offline, it stores one uniform tier of a prefix-readable weight stream and bakes a distortion tensor. Online, it profiles a workload's own prefill without labels and solves a Lagrangian rate-distortion allocation under the decode functional; routing frequency provably cancels from every per-expert decision, and the solve costs one dot product per expert and a bisection. A deployment therefore keeps a single artifact that prefill reads at the stored rate and decode reads at the workload's own rate. On Qwen3-30B-A3B, DuoRate reading 2.3 bpw exceeds every 2-bit-class baseline by 6.3 to 47.0 points of average accuracy, and at 2.9 bpw it matches 4-bit formats that read 1.4-1.6 bpw more. The advantage is largest under long decoding: on GSM8K, DuoRate at 2.9 bpw matches or exceeds every 4-bit format and trails BF16 by only 0.25 points, and at 2.6 bpw it still matches or exceeds the 4.5-bit NF4 and FP4. Against controls in its own format, the allocation alone is worth 0.07-0.11 bpw of read rate. Code will be released upon publication.
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All authors Mengqi Guo, Zhe Wei, Yuan Yuan, Jiunn Bin Lim, Boyi Pan, Michael Bi Mi

Machine Learning · Cross-listed from cs.DC

Taking Tokenization off the Host for Agentic LLM Serving

Agentic workloads resend long contexts that barely change between calls. Prefix caching now skips most of their prefill, yet every request must still be tokenized in full before the cache can even be consulted. Tokenization, a CPU stage long treated as negligible, becomes the largest part of time-to-first-token (TTFT), and a frontend that tokenizes for a whole GPU fleet limits how many GPUs it can feed. We present GraphTok, a GPU tokenizer that runs the entire encoding pipeline, from pre-tokenization through byte-pair encoding (BPE) merging to token-ID assembly, as one replayable CUDA graph. GraphTok reproduces the reference token IDs bit-for-bit on GPT-2, Llama 3, Qwen 2.5, DeepSeek-V3, and Gemma 3, hands short inputs to a CPU engine where the GPU cannot win, and plugs into unmodified vLLM and NVIDIA Dynamo. GraphTok encodes one million GPT-2 tokens in 1.7-3.2 ms including data transfers, and on Llama 3 it is 4.7-6.0x faster than gigatoken, the strongest CPU tokenizer. On TokTier's own single-request benchmark, it is 2.6-3.9x faster than gigatoken and up to 18.1x faster than TokTier. In vLLM with a cached prefix, it lowers mean TTFT by 2.1-2.4x. The largest gain is capacity. Within a 2 s P99 target, one Dynamo frontend with GraphTok sustains 518 requests/s of 121k-token traffic, the busiest-hour load of 56 GPUs, against 296 with gigatoken and 18.5 with the default tokenizer. Across 121k to one million tokens, this is 1.75-2.5x the load gigatoken sustains, with a P99 up to 64x lower where gigatoken's tail breaks.
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All authors Mohammad Siavashi, Pascal Schwinte, Ali Banaei, Gerald Q. Maguire Jr., Marco Chiesa, Dejan Kostić

Machine Learning

SBNO : Schrödinger Bridge Neural Operator for the Forward and Inverse Problems under Missing Information

Partial differential equation (PDE) surrogate modeling often relies on either dense observations or access to governing equations/physics constraints. In practice, observations can be sparse and partial, and the underlying physics may be partially specified or unavailable. We introduce SBNO, an equation-free paired-data diffusion bridge matching framework that learns conditional operators for both forward and inverse PDE problems under partial observations. SBNO uses diffusion Schrödinger bridge matching to learn a pair of time-dependent drifts from a mask-aware endpoint coupling that preserves empirical input-solution pairing during training and supports both PDE-task directions within a single framework. At inference time, SBNO produces a deterministic point reconstruction by integrating the probability-flow ODE constructed from the learned drift pair, without inference-time observation or PDE guidance-weight tuning. On five PDE benchmarks with 5% observations, SBNO achieves superior or comparable accuracy to baselines while demonstrating lower test-instance error dispersion. Furthermore, SBNO is at least $9.7 \times$ faster and reduces GPU memory by at least $4.3 \times$ compared to guided-diffusion baselines.
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Machine Learning · Cross-listed from eess.SP

JEPA-kMMVAE: CSI Prediction for Time-Varying Wireless Channels

This paper considers channel state information (CSI) prediction using neural networks for time-varying multi-antenna channels from noisy historical observations. The main challenge is to exploit temporal correlation while distinguishing channel evolution from observation noise. We propose JEPA-kMMVAE, which combines a joint-embedding predictive architecture with a k-memory Markov variational autoencoder to predict future CSI through temporally structured latent representations. The framework supports direct prediction and residual corrections relative to the latest latent state and noisy CSI observation. Simulation results show that the residual configuration outperforms the evaluated baselines at moderate and high input CSI signal-to-noise ratios, while sequence baselines remain more accurate under stronger noise.
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All authors Efstathios Chatziloizos, Konstantinos Vandikas, Aneta Vulgarakis Feljan, Zheng Chen, Nikolaos Pappas

Machine Learning

Sustainable Cloud-Fog-Edge Systems for Smart Buildings: Algorithmic Adaptation under Memory Constraints and Dynamic Orchestration Strategies

The escalating environmental footprint of the Information and Communication Technol- ogy (ICT) sectorwith global Data Center electric- ity usage potentially reaching 3% by 2030 and the imperative for real-time responsiveness in smart buildings demand a foundational shift towards Edge Computing. This article proposes a holis- tic architectural and algorithmic approach for cre- ating autonomous, resilient, and privacy-preserving learning systems within smart buildings, advancing the core concept of the building itself as the data center. Our contributions, demonstrating originality compared to conventional centralized systems, are structured around three main pillars: 1) Validation of resilient data acquisition chains using the af- fordable Arduino ecosystem (Uno R4 WiFi/BME280) and secure persistence solutions including centralized archiving (Node-RED/MySQL) and secure remote transfer (Python/rsync/SSH). 2). The proposal of a lightweight, KOptim orchestration framework, inter- operable with the FIWARE standard, for the dynamic management of Service Level Agreements (SLA). 3) The adaptation and experimental valida- tion of the Generalized Hebbian Algorithm (GHA) for Principal Component Analysis (PCA) on low- power microcontrollers,We introduce and compare an iterative learning strategy using data buffers, featuring sorting and explicit preservation of extreme samples to maintain diversity. Experimental results on the high-dimensional Tour Perret sensor data confirm that this novel method, despite introducing a necessary temporal complexity of O(W log W ) due to sorting, achieves convergence and final result quality that is visually equivalent to processing the entire dataset in full memory, reliably identifying two distinct operational states.
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Machine Learning

Structure-Aware Numerical Stabilization for Half-Precision Proximal Policy Optimization

Local online training on resource-constrained platforms requires low computational and training-state overhead. We study the numerical stability and computational efficiency of half-precision proximal policy optimization (PPO) on commodity GPUs. Directly converting PPO training to FP16 is unreliable because numerical errors feed back through policy updates and subsequent data collection, while PPO repeatedly compares a current policy with a fixed behavior policy. We propose PPO-FP16 with three structure-aware modules. Global scalar protection stabilizes statistics shared across a minibatch or parameter update. Policy-change residual protection extracts and preserves small differences between the current and behavior policies. Efficient persistent-update protection stabilizes optimizer state and parameter writeback while reducing state storage. These changes preserve the PPO objective, hyperparameters, and training budget. Across six continuous-control tasks and five seeds, PPO-FP16 achieves the lowest mean return-AUC rank (1.90) among the four methods and ranks first in 17 of 30 environment-seed comparisons. Eight of nine performance configurations yield PPO update speedups ranging from 1.16 to 2.03 times. Relative to Full FP32 Adam, optimizer-state memory is reduced by 71.7 to 74.9 percent, and peak allocated GPU memory is reduced by up to 44.5 percent. The results show that protecting a small set of structurally important quantities can deliver stable, efficient FP16 PPO without retuning.
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Machine Learning

MORAD: Reinforcement Learning with Multi-Objective Rewards for RNA Inverse Design

We introduce MORAD, an online reinforcement learning framework for backbone-conditioned RNA diffusion models that trains a single shared policy across diverse target backbones. Structure-conditioned RNA inverse design seeks nucleotide sequences compatible with a target three-dimensional backbone, yet existing reinforcement learning approaches either optimize a separate policy for each target backbone or rely on offline preference optimization, leaving online post-training of a reusable backbone-conditioned model largely unexplored. MORAD combines backbone-conditioned group sampling, group-relative reward normalization, and a forward-process diffusion objective. Beyond existing RL rewards that primarily target tertiary structural quality, MORAD jointly optimizes six measurements spanning tertiary geometry, base pairing, ensemble behavior, and sequence composition. To aggregate these heterogeneous objectives despite differences in scale and optimization direction, MORAD maps each measurement to a bounded desirability score and combines them with a weighted geometric mean. Compared with a tertiary-structure-only reward, this multi-objective formulation improves 10 of the 11 evaluation metrics that have a preferred direction. Applied to pretrained RIDE, MORAD improves GDT-TS by 16.0% (from 0.3300 to 0.3827) and pairing MCC by 19.4% (from 0.6110 to 0.7295), while reducing normalized ensemble defect by 27.5% (from 0.3906 to 0.2830). On the test set, MORAD outperforms RiboDiffusion, gRNAde, and RDesign across tertiary structural accuracy, secondary-structure pairing, and thermodynamic quality, establishing a new state of the art in structure-conditioned RNA inverse design.
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Machine Learning

DAG Structure Learning with Node-Varying Heavy-Tailed Disturbances

DAG structures can be learned from observations by incorporating acyclicity via smooth constraints, such as DAGMA's log-determinant function. Typically, observations and the underlying DAG are related through linear structural equation models, with Gaussianity assumption on the disturbances at each node. Extending DAG learning methods that account for scale and tail behavior of disturbances that vary across nodes remains a challenge. We propose a node-varying Student-$t$ DAGMA that jointly estimates the graph structure, node-specific disturbance scales, and the degrees-of-freedom parameter. A Gaussian scale-mixture representation yields an iteratively reweighted formulation that down-weights large standardized residuals. Building on existing results, we also establish identifiability of the graph and disturbance parameters. Synthetic experiments demonstrate improved structural recovery under heterogeneous heavy-tailed disturbances, and experiments on real finance data show that the proposed method yields lower test negative log-likelihood than the evaluated baselines.
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Machine Learning · Cross-listed from cs.CV

Sonic-AMG: Streaming Human Motion Generation from Spatial Audio

Modeling human reactions to spatial audio requires understanding both what is heard and where it comes from. Prior work generates motion offline from complete acoustic and spatial input sequences. Humans, however, react to sounds without knowing what they will hear next. We present Sonic-AMG, to our knowledge the first framework for streaming human motion generation from spatial audio. The model encodes acoustic content and body-relative source geometry as separate tokens. Conditioned on these tokens, a causal transformer with a flow head generates continuous motion latents, from which a causal decoder reconstructs motion segments. Standard teacher-forced training derives motion histories and body-relative source locations from ground-truth motion, whereas streaming inference relies on generated motion for both, resulting in a training-inference mismatch. To reduce this history discrepancy, we introduce rehearsal training, which combines full-sequence teacher-forced supervision with supervised prediction along short autoregressive self-rollouts. To keep spatial conditioning consistent with generated motion, we propose spatial feedback, which recomputes body-relative source locations from generated root poses during both rehearsal training and inference. On SAM, Sonic-AMG achieves state-of-the-art FID and R-precision. It further supports real-time online generation of coherent reactions across sound events and source locations. Project page: https://jingchengni.com/sonic-amg/.
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All authors Jingcheng Ni, Zekun Li, Zhiyang Dou, Xiaoyan Cong, Ziyao Zeng, Hongyang Du, Randall Balestriero, Taku Komura, Srinath Sridhar

Machine Learning · Cross-listed from cs.CV

Decoding Register Tokens Preserves Global Scene Details

Pretrained vision transformers learn structured image representations spanning spatial patch tokens and non-spatial tokens. Recent analyses suggest that non-spatial register tokens encode global scene properties such as illumination, blur, and style. Yet patch-based image decoders discard these outputs, leaving the decoder to recover image appearance from patches alone. We investigate whether retaining register features improves decoding when the complete spatial patch representation is already available. We study this question using representation autoencoders (RAEs) with frozen register-equipped encoders. Our decoder processes four register tokens together with all patch tokens through joint self-attention. Appearance probes, paired reconstruction-error analysis, and fixed-decoder register substitutions examine which global image properties are accessible from registers and how their values affect reconstructed pixels. For generation, we train a multi-head attention pooling (MHAP) predictor to recover register features from sampled patches, keeping the pretrained diffusion model and its samples unchanged. On ImageNet-1K, our ViT-B decoders achieve mean reconstruction FIDs of 0.472 with DINOv2 and 0.442 with DINOv3, reductions of 9.5% and 5.2% relative to their respective patch-only baselines. The corresponding PSNRs are 19.73 and 20.54 dB. For generation, our DINOv2 models achieve a mean FID of 1.641, 9.8% below the patch-only baseline on identical sampled patches.
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Machine Learning

Recovering Irreducible Three-Body Interactions with Lagrangian Neural Networks

Lagrangian Neural Networks (LNNs) learn mechanical systems from trajectory data by parameterizing a scalar Lagrangian and deriving the dynamics through the Euler-Lagrange equations, biasing the model toward motion that respects the variational structure of mechanics. The interactions studied so far have been pairwise-additive, leaving open whether LNNs can recover an irreducible many-body interaction from motion alone. We address this using the Axilrod-Teller triple-dipole interaction, the leading three-body dispersion term, whose dependence on the collective geometry of three particles cannot be represented by any sum of pairwise terms. We prescribe the kinetic energy exactly and learn only the potential, as a function of interparticle distances and angles. Combined with a signal-aware sampling strategy that concentrates training data where the three-body signal is strongest while preserving broad coverage of configuration space, this recovers the interaction from accelerations alone. The learned potential reproduces the radial scaling, angular dependence, and characteristic sign reversal of the Axilrod-Teller interaction, and generates stable trajectories. Embedding it within a pairwise Lennard-Jones potential lets us examine its observability: the three-body term is recovered once its dynamical signature exceeds the residual modeling error, which it does cleanly at amplified coupling but not at the coupling of a real noble gas, bracketing the transition between the two. Finally, symbolic regression on the trained potential, with no assumed functional form, returns the Axilrod-Teller expression with angular numerator, radial law, and coupling constant intact. An LNN with domain-specific structure can thus recover an irreducible three-body interaction from trajectories as a closed-form law, pointing toward learning interaction laws whose structure is not known a priori.
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All authors Sena Kalabalik, Sukru Caglar, Abdullah Umut Hamzaogullari, Arkadas Ozakin

Machine Learning · Cross-listed from cs.CL

Do Prompt Optimizers Break Requirements They Are Not Scored On? A Preregistered Study

Prompt optimizers rewrite a prompt to raise one target metric, but prompts also state requirements the metric does not score, such as an output format, citations, or abstention. In a preregistered study, we run GEPA, MIPROv2, and TextGrad on HotpotQA, SQuAD 2.0, and IFEval and count per-item violations of unscored requirements with deterministic checks. By the preregistered criterion, all three optimizers produce regressions, substantially on HotpotQA, where net regression in citation validity reaches 10.7 to 41.6 points while exact match rises by 21 to 34 points. A post-hoc decomposition changes this reading. The optimized prompts elicit reasoning before the required JSON object, and under the 200-token output cap used throughout, 13.9% to 47.0% of responses end before any answer appears. Among parseable outputs, net regression is within 3 points of zero. With a 1,024-token cap, extraction failures disappear, content regression stays below 1 point, and exact match rises further. Two simple gates fail the preregistered criterion. The side effect is narrower than hypothesized: optimized prompts are more accurate and break an explicit output contract, and a lenient target metric does not show the cost.
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Machine Learning

MHR-Router: Multimodal Heterogeneous Retrieval-Enhanced Adaptive Routing for VLM Inference

Vision-language models (VLMs) exhibit complementary capabilities, yet selecting the most suitable expert for a given image-question query remains challenging due to heterogeneous multimodal inputs and varying expert strengths. Existing routing approaches rely on text-based cues or static model profiles, failing to capture fine-grained visual evidence and expert-specific failure patterns. To address this, we propose MHR-Router, a multimodal heterogeneous retrieval-enhanced adaptive routing framework for VLM inference. It accurately dispatches each multimodal query to the most suitable VLM expert via local retrieval evidence. MHR-Router consists of two stages: (1) Multimodal Routing Representation, which fuses frozen multimodal features into a comprehensive query representation; and (2) Heterogeneous Retrieval-Enhanced Adaptive Routing, which retrieves expert-specific success and failure memories as local evidence and employs a shared scorer to adaptively select the optimal expert. Experiments show that MHR-Router effectively achieves heterogeneous modality routing and consistently improves accuracy over traditional baselines.
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All authors Wenjuan Zhu, Zheming Yang, Yunqing Hu, Qi Guo

Machine Learning

CopRoute: Dependence-Aware Conformal Routing for Language Models

Set-based language model routing aims to increase the coverage of the event where at least one model answers a query correctly while controlling the number of inference calls made. Existing risk-controlled routing policies bound the all-miss risk (the probability that every model in the selected set fails) by calibrating a single conformal threshold and applying it to a nested family of model sets. Because each model is scored in isolation, these policies ignore the dependence structure of model failures. Models that share training data or architecture tend to fail on the same queries, so two individually strong models can be jointly redundant while a weaker but complementary model covers the queries that the others miss. To account for this dependence, which existing risk-controlled policies ignore, we propose CopRoute, which orders models by how many new queries each one answers correctly beyond those already selected, decides per query how far down that order to go, and then picks the smallest cutoff that still meets the target risk. We show that CopRoute's ordering attains, on the design data, the best guarantee any efficient fixed-ordering algorithm can give for the average number of calls to the first correct model, and that a separate calibration step certifies the all-miss risk of the deployed sets. On RouterBench and RouterEval, CopRoute attains the fewest certified calls on nine of ten datasets at a target risk of 0.05 and on eight of ten at 0.10, making up to 79 percent fewer calls (median 24 percent) than the state-of-the-art risk-controlled policy at the same certified all-miss risk.
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Machine Learning · Cross-listed from cs.CV

CV-OPD: Contrastive Vision On-policy Distillation

On-policy distillation (OPD) reveals versatility and convenience during VLM post-training, providing dense supervision for student from teacher. However, we observed an anomaly that the distilled VLM could still answer the questions accurately even when the related visual regions were masked or replaced with noise. Building on this observation, our quantitative and qualitative experiments demonstrate that OPD, which uses the answer as a hint, has failed to teach students to genuinely seek out and rely on visual evidence. Our theoretical analysis suggests that this failure arises from a shortcut enabled by the lack of visual constraints during distillation. To address the issue, we introduce Contrastive Vision On-policy Distillation (CV-OPD), which compares teacher distributions induced by positive and negative crops while conditioning on the same student prefix and augments optimization with a margin-based contrastive constraint, which is modulated with discrepancy gating across token and sample level. Specifically, CV-OPD first introduces a negative teacher unrelated to the answer and designs a Contrastive Divergence Loss (CDL) that constrains the feature distribution of student by contrasting the positive and negative teachers, correcting how the student exploits visual regions. The CV-OPD introduces a Discrepancy Aware Gate (DAG) that uses token-level and sample-level discrepancies to select visually relevant tokens for optimization, directing the student's attention toward visual content. Extensive experiments across a broad range of fine-grained visual benchmarks demonstrate that CV-OPD substantially alleviates shortcut and consistently improves the visual reasoning capabilities of existing VLMs.
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All authors Haowei Wang, Hao Lin, Qi Zhu, Jiayi Ji, Deyi Ji, Liujuan Cao, Rongrong Ji

Machine Learning

Data-Adaptive Mahalanobis Metric Learning for Cross-Head Attention in Transformers

In this paper, we propose Data-Adaptive Mahalanobis Cross-Head Attention (DAMCHA), a simple and effective attention mechanism that generalizes Multi-Head Attention (MHA) through the lens of metric learning. Standard MHA implicitly learns a static, head-wise Euclidean similarity corresponding to the diagonal blocks of a unified cross-head metric matrix, discarding all off-diagonal interactions across heads. DAMCHA addresses this limitation via two key innovations. First, it learns the full cross-head metric matrix, inducing a Mahalanobis-like similarity that explicitly captures inter-head interactions beyond the restricted block-diagonal structure of MHA. Second, it parameterizes the metric matrix as an input-dependent function, enabling the attention geometry to dynamically adapt to the intrinsic manifold structure of the data rather than remaining fixed after training. We further introduce principled regularization strategies, most notably stack-wise parameter sharing, to ensure computational efficiency and stable optimization. DAMCHA serves as a drop-in replacement for MHA and its variants in various Transformer architectures, delivering superior expressive power and learning performance with comparable or reduced computational overhead. Extensive experiments demonstrate that DAMCHA-based Transformers consistently outperform competing baselines across a range of benchmark tasks. Code is available at https://github.com/erwinmsmith/DAMCHA.
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All authors Zhenke Duan, Xin Li, Jiqun Pan, Dong Xiaofei, Hanwen Ning, Xinyuan Song

Machine Learning

Neural Surrogate Modeling of Ultrasonic Wave Propagation in Heterogeneous Media

Neural surrogates provide computationally efficient auto-regressive modeling of wave propagation, enabling e.g. fast inverse solutions. Despite recent progress, the current surrogates are not yet sufficient for the needs of ultrasonic sensing, characterized by high frequency and heterogeneous propagation media. We show how methods building on Fourier Neural Operators (FNO) fail to capture essential signal features, such as reflections, whereas U-Net -based methods learn the wave fields well but lack the ability to transfer information across different spatial scales. We then propose a new surrogate that captures the best of the two worlds, by integrating FNOs and local-integral resampling into a U-Net architecture. We show it can be trained on limited data, and that the predictions are robust to input noise and work across spatial scales.
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All authors Burla Nur Korkmaz, Petro Moilanen, Ari Salmi, Harsha Vardhan Tetali, Arto Klami

Machine Learning

CAST: Credit Alignment for Cross-Tokenizer On-Policy Distillation

Cross-tokenizer on-policy distillation (OPD) requires aligning teacher and student sequences before their scores can be compared. Decoded-text alignment provides such correspondence at the chunk level, but leaves a distinct problem unresolved: credit alignment. A chunk-level signal specifies how much a span should change, but not how that signal should be distributed across student tokens, while tokens without teacher correspondence remain unconstrained. We propose CAST (Chunk-aware credit Assignment with Selective Token Anchoring), a shift-or-stay framework that addresses both issues. For aligned chunks, CAST redistributes each chunk's advantage across student tokens using predictive uncertainty and local teacher-signal smoothness, emphasizing learning opportunities supported by locally consistent teacher feedback while preserving the chunk's total advantage. The resulting weights exactly solve a KL-regularized credit-allocation problem. For unaligned positions, CAST selectively anchors the student to its initial policy through a KL penalty, limiting drift where teacher supervision is unavailable. Because credit assignment is separated from chunk construction, CAST also applies to punctuation-defined or fixed-length chunks under shared tokenization. Across six mathematics, science, and code benchmarks, CAST improves the average over the strongest evaluated baseline by $2.45$ and $1.32$ points for cross-tokenizer transfer from Qwen3-8B to Mistral-7B and Llama-3.1-8B, respectively, and by $2.10$ points for shared-tokenizer transfer to Qwen3-1.7B.
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All authors Jingru Yang, Jinhang Wu, Minjing Shi, Shengfeng He, Xuyan Li, Man Tan, Biye Li