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Physics Physics

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Tuesday 17 February

Physics and Society · Cross-listed from q-bio.PE

Household size can explain 40% of the variance in cumulative COVID-19 incidence across Europe

Household size impacts the spread of respiratory infectious diseases: Larger households tend to boost transmission by acquiring external infections more frequently and subsequently transmitting them back into the community. Furthermore, mandatory interventions primarily modulate contagion between households rather than within them. We developed an approach to quantify the role of household size in epidemics by separating within-household from out-household transmission, and found that household size explains 41% of the variability in cumulative COVID-19 incidence across 34 European countries (95% confidence interval: [15%, 46%]). The contribution of households to the overall dynamics can be quantified by a boost factor that increases with the effective household size, implying that countries with larger households require more stringent interventions to achieve the same levels of containment. This suggests that households constitute a structural (dis-)advantage that must be considered when designing and evaluating mitigation strategies.
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All authors Seba Contreras, Philipp Dönges, Maciej Filinski, Joel Wagner, Viktor Bezborodov, Marcin Bodych, Barbara Pabjan, Franciszek Rakowski, Jan Pablo Burgard, Tyll Krueger, Viola Priesemann

Biological Physics · Cross-listed from cond-mat.soft

Virtual ultrasound machine operating in a GHz to MHz frequency range for particle-based biomedical simulations

Ultrasound-matter interactions underpin numerous biomedical and soft-matter applications, yet simulating these phenomena is challenging due to the large separation of viscous and sonic time scales. Continuum methods capture large-scale wave propagation but cannot resolve microscale interactions, while particle-based approaches offer molecular resolution but struggle with efficiency and stability at larger scales. We introduce a particle-based virtual ultrasound machine that uses a novel smoothed dissipative particle dynamics variant with an implicit pressure solver and a negative-pressure stabilization scheme, required to mimic acoustic propagation across MHz-GHz frequencies. We demonstrate its capabilities by modeling the acoustophoresis of encapsulated microbubbles, a key mechanism in ultrasound-mediated drug delivery. Beyond this application, the approach establishes a generalizable platform for simulating wave-matter interactions in soft and biological materials, opening new directions for computational studies of acoustics-driven phenomena in science and engineering.
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Geophysics · Cross-listed from astro-ph.EP

The First Instrumentally Documented Fall of an Iron Meteorite: atmospheric trajectory and ground impact

Iron meteorite falls are rare compared to stony meteorites, and until recently no iron meteorite had a reliably determined pre-atmospheric orbit. This changed on 2020 November 7, when a bright fireball was observed across Sweden and neighboring regions, with optical, acoustic, and seismic detections extending up to 665 km from the trajectory. After a month-long recovery effort, a 13.8 kg iron meteorite was discovered near Ådalen, representing the first instrumentally recorded and recovered fall of its type and the first iron meteorite with a derivable heliocentric orbit; the event also exhibited the lowest terminal height measured for a well-documented fireball. We combine optical, infrasound, and seismic data to reconstruct the luminous trajectory and employ a Monte Carlo model to simulate the dark flight phase and predicted strewn field, while also investigating the plausibility of a ricochet prior to final deposition. Our analysis identifies distinct aerodynamic properties of iron meteoroids compared to stony bodies, including the influence of streamlined shapes and deep regmaglypts on drag and flight stability, underscoring the need to incorporate iron-specific parameters into entry models to constrain atmospheric dynamics and improve recovery predictions for future events.
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Atomic and Molecular Clusters · Cross-listed from cond-mat.mes-hall

Isotope effect in the work function of lithium

The work functions of 7Li and 6Li metals have been measured as a function of temperature, by using photoionization of pure isolated metal nanoparticles in a beam. These data reveal a marked isotope effect in the temperature variation of these work functions. Furthermore, for both isotopes the curvature of this temperature variation is found to be significantly larger than may be ascribed purely to a change in the electron gas density. These findings enhance the characterization of lithium as a quantum material in which the interplay between electronic and ionic degrees of freedom is nontrivial, and call for a microscopic understanding beyond simple models. Additionally, the slope of the work function curves was observed to vanish in the low temperature limit, as had been predicted on the basis of the Third Law of thermodynamics.
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Atomic and Molecular Clusters · Cross-listed from cond-mat.mes-hall

Temperature-dependent photoionization thresholds of alkali-metal nanoparticles reveal thermal expansion and the melting transition

A precision measurement of the photoionization of pure sodium and potassium nanoparticles isolated in a beam enabled an accurate determination of their work functions as a function of temperature. In addition to resolving and quantifying the initial gradual decrease of the work function with temperature, which is associated with thermal expansion, the experiment revealed that the work function then undergoes a distinct drop both in magnitude and in slope that signifies the onset of nanoparticle melting. This establishes that a structural phase transition can be detected via a high-resolution measurement of the photoemission threshold. The melting temperature of nanoparticles with diameters of 7-9 nm is reduced by nearly 100 K relative to the bulk value. This suppression aligns with predictions from the Gibbs-Thomson equation which describes finite-size phase transitions.
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Plasma Physics

Flux pumping and bifurcated relaxations of helical core in 3D magnetohydrodynamic modelling of ASDEX Upgrade plasmas

Flux pumping was achieved in recent hybrid scenario experiments in the ASDEX Upgrade (AUG) tokamak, which is characterized by a sawtooth-free helical quiescent state and the anomalous radial redistribution of toroidal current density and poloidal magnetic flux. In this article, the self-regulation mechanism of the AUG core plasma during flux pumping is investigated at realistic parameters using the JOREK code based on the two-temperature, nonlinear, full magnetohydrodynamic (MHD) model. A key milestone in AUG flux pumping modelling is achieved by quantitatively reproducing the clamped current density and safety factor profiles in the plasma core, demonstrating the effectiveness of the dynamo effect in sustaining the flux pumping state. The dynamo term, that is of particular interest, is primarily generated by the pressure-gradient driven m/n = 1/1 quasi-interchange-like MHD instability. The work systematically extrapolates the parameter regimes of flux pumping from the above AUG base case by scanning dissipation coefficients and plasma beta. The simulation results reveal bifurcated plasma behaviours at different Hartmann numbers, including distinct states such as flux pumping (helical core with a flat current density), sawteeth (periodic kink-cycling), single crash (without subsequent cycle), and quasi-stationary magnetic island (peaked current density). Transitions from marginal flux pumping state to sawteeth are observed in long-term simulations. The relationships between system dissipation, plasma beta, and different plasma states are carefully analyzed. For practical purposes, the potential operational window for flux pumping, as determined by plasma density and temperature, is estimated. The modelling efforts advance the understanding of flux pumping and facilitate the development of a fast surrogate model for efficient evaluation of flux pumping.
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All authors H. Zhang, M. Hoelzl, I. Krebs, A. Burckhart, A. Bock, S. Guenter, V. Igochine, K. Lackner, D. Bonfiglio, E. Fable, F. Stefanelli, R. Ramasamy, H. Zohm, JOREK TEAM, ASDEX UPGRADE TEAM

Atomic and Molecular Clusters · Cross-listed from cond-mat.mes-hall

Photoionization of temperature-controlled nanoparticles in a beam: Accurate and efficient determination of ionization energies and work functions

A beam of free alkali metal nanoparticles is produced by a condensation source, passed through a thermalizing tube adjustable over a broad temperature range, and ionized by tunable light. High stability of the particle flux and an automated data acquisition routine allow efficient collection of photoionization yield curves. A careful fit of the data to the universal Fowler function makes it possible to obtain nanoparticle ionization energies, and from those, the metal work functions, with $\sim$0.2% precision. The experimental arrangement, nanoparticle thermalization rates, and ionization threshold analysis are described in detail. The use of ultrapure and temperature-controlled gas-phase nanoparticles facilitates the analysis of electronic properties, such as work functions, and of their interplay with thermal lattice dynamics.
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All authors Atef A. Sheekhoon, Abdelrahman O. Haridy, Sebastian Pedalino, Vitaly V. Kresin

Fluid Dynamics

A Robust Truncated-Domain Approach for Cone–Jet Simulations in Electrospinning and Electrospraying

Direct numerical simulations of electrospinning and electrospraying are computationally demanding due to large-scale separation between the needle and the tip-to-collector distance. The cone-jet mode that occurs in the vicinity of the needle arises from a delicate balance between surface tension, viscous stresses, inertia, and electric stresses. This mode has a central role in determining the subsequent instabilities of the jet and the eventual outcomes on the collector. Truncated-domain simulations offer a viable alternative but depend critically on the accuracy of far-field electrostatic boundary conditions. Existing truncated-domain approaches based on analytical expressions for the electric potential systematically underestimate the electric field near the needle tip and require empirical tuning informed by prior experiments or full-domain simulations, thereby limiting their predictive capability. Here, we present a general truncated-domain framework for electrohydrodynamic (EHD) simulations of the cone-jet mode that avoids these limitations. Our approach exploits inexpensive full-domain electrostatic simulations to obtain the exact electric field and potential distributions near the needle, which are then imposed as boundary conditions in an EHD simulation carried out on a truncated domain. Comparisons with full-domain EHD simulations and experimental data demonstrate that the proposed approach accurately reproduces cone-jet shapes as well as key physical quantities, including electric currents, charge distributions, velocity fields, and Maxwell stresses, while converging at substantially smaller domain sizes. The formulation eliminates tunable parameters, does not require prior knowledge of the cone-jet configuration, and significantly reduces computational cost, providing a reliable and predictive framework for studying electrohydrodynamic cone-jet flows.
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Classical Physics

Development and validation of a sharp interface immersed boundary method for high-speed flows

This study presents an advanced sharp-interface immersed boundary method (IBM) integrated with the blastFOAM library on the OpenFOAM platform for high-speed compressible flow simulations. The developed solver extends the existing IBM techniques available in OpenFOAM to compressible regimes, tackling challenges such as shock waves, expansions, and dynamic geometries without needing body-fitted meshes. A novel contribution of this work is the implementation of a slip boundary condition for velocity at immersed surfaces, specifically designed to handle inviscid highspeed flows. The method also combines the second-order polynomial IBM reconstruction with multiple flux schemes such as Kurganov, Tadmor, HLL (Harten-Lax-van Leer), and AUSM+up (Advection Upstream Splitting Method Plus Upwind). The technique achieves significant accuracy across diverse high-speed flow conditions. Extensive validation is performed through supersonic flow cases over a wedge, a cylinder, an aerofoil, a sphere, and a moving piston. Results show excellent agreement with analytical and body-fitted solutions, with sharp resolution of shocks, minimal numerical oscillations, and shock reflections. A grid convergence study confirms the solver's reliability across varying mesh resolutions, while three-dimensional simulations highlight its capability for scaled-up applications. This solver provides a flexible, efficient, and accurate tool for capturing high-speed flow phenomena across various Mach numbers and geometries. It offers significant advantages in mesh handling, particularly for dynamic or intricate configurations, making it ideal for aerospace and engineering applications involving compressible flows.
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All authors Punit Pandey, Ankit Bansal, Krishna Mohan Singh, Yannick Hoarau

Applied Physics

Tailoring reflectionless complex media for non-Abelian braiding of acoustic modes

Multiple scattering of sound and light can be tailored for diverse applications. Despite the great progress enabled by technologies such as time-reversal propagation and wavefront shaping, the full control of the transmission matrix remains a significant challenge. In this work, we propose a multi-scattering-based approach to design reflectionless complex media with an arbitrary unitary transmission matrix. As such, the perfect transmission of waves through such a medium performs a unitary operation. Based on this principle, we experimentally demonstrated braiding of multiple waveguide modes in an acoustic waveguide via multiple scattering and showed non-Abelian characteristics arising from the concatenation of distinct complex media. Furthermore, we show that the principle can be extended for realizing arbitrary unitary operations beyond braiding. Our scheme uses generalized Wigner-Smith operators to design the optimal acoustic complex media with near-arbitrary targeted functionalities. The scheme is generally applicable beyond acoustics, with broad implications to other wave types. Our results demonstrate unprecedented control over multiple-scattering waves and establish complex media as a viable route to modal control and operations on compact platforms, providing a new design paradigm for multimode, reconfigurable wave-based devices with potential applications in multiplexed communication, imaging, and the manipulation of quantum waves.
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Optics

Optofluidic light routing via analytically configuring streamlines of micro-flow

Transformation optics (TO) is a new method to design metamaterials that can manipulate electromagnetic fields. Inspired by the traditional TO techniques which is mostly based on the solid metamaterials with a limited range of tunability, a novel streamline tracing-based transformation optofluidics (STTOF) method is proposed to manipulate the light path by analytically designating the light-carrying streamlines of the flow in a two-dimensional circular bounded domain. A dipole flow model is built to analytically calculate the streamlines of the flow field inside the domain which allocates the optical/fluidic source and sink pairs at arbitrary positions. Liquid core/liquid cladding (L2) configuration is used in the experiment to trace the light via a specific streamline. Experimental results verify that the light paths agree well with the theoretical predictions, and demonstrate that a good range of tunability can be achieved by adjusting the flow rates and the source-sink positions of optical/fluidic source and sink pairs.
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All authors R. Yan, Y. Yang, X. Tu, T. Huang, Y. Liu, C. Song

Chemical Physics

Machine learning of electronic structure and atomistic properties from the external potential

Electronic structure calculations remain a major bottleneck in atomistic simulations and, not surprisingly, have attracted significant attention in machine learning (ML). Most existing approaches learn a direct map from molecular geometries, typically represented as graphs or encoded local environments, to molecular properties or use ML as a surrogate for electronic structure theory by targeting quantities such as Fock or density matrices expressed in an atomic orbital (AO) basis. Inspired by the Hohenberg-Kohn theorem, in this work, we propose an operator-centered framework in which the external (nuclear) potential, expressed in an AO basis, serves as the model input. From this operator, we construct hierarchical, body-ordered representations of atomic configurations that closely mirror the principles underlying several popular atom-centered descriptors. At the same time, the matrix-valued nature of the external potential provides a natural connection to equivariant message-passing neural networks. In particular, we show that successive products of the external potential provide a scalable route to equivariant message passing and enable an efficient description of long-range effects. We demonstrate that this approach can be used to model molecular properties, such as energies and dipole moments, from the external potential, or learn effective operator-to-operator maps, including mappings to the Fock matrix and the reduced density matrix from which multiple molecular observables can be simultaneously derived.
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Optics · Cross-listed from cond-mat.mes-hall

Transition radiation in helical metamaterials with strong spatial dispersion

The theory of transition radiation in helical metamaterials with strong spatial dispersion is developed in the framework of an effective field theory approach. The average number of photons radiated by a charged particle passing through a plate made of this metamaterial is obtained. Given the positions of the transition radiation maxima in momentum space for different velocities of a charged particle, the method for reconstruction of the dispersion law of plasmon-polaritons in metamaterials is proposed. Applying this method conversely, one can predict the radiation spectrum and polarization properties of transition radiation by means of the dispersion law of plasmon-polaritons in the metamaterial known, for example, from the effective model. It is shown that the strong spatial dispersion alters qualitatively the properties of transition radiation from a charged particle traversing normally a plate made of the helical metamaterial along its symmetry axis in the paraxial regime, viz., there is a nonzero forward radiation in contrast to transition radiation in media without strong spatial dispersion. Vavilov-Cherenkov radiation and the anomalous Doppler effect in helical metamaterials with strong spatial dispersion are described.
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Instrumentation and Detectors

Three-dimensional Compton imaging of undepleted volumes of germanium detectors

The shape of the undepleted volume of a p-type Broad Energy Germanium detector has been imaged at various bias voltages by measuring spatially-resolved three-dimensional Compton-scattering efficiency. The bias voltage was raised stepwise from $-50\,\text{mm}$ to the full-depletion voltage.The geometric acceptance was determined at full depletion. Below full depletion, the relative acceptance observed for $2\times2\times2\,\text{mm}^3$ voxels was used to create the image of the undepleted volume for each bias voltage. The images were fitted with predictions from the open-source software package SolidStateDetectors$.$jl to extract the radial impurity density profile of the detector. The strong radial decrease in the impurity density obtained in the outermost centimeter was validated using independent capacitance measurements. This novel method to determine the impurity density via three-dimensional Compton-scattering efficiency maps provides a powerful tool for advanced detector bulk characterization.
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All authors Iris Abt, Arthur Butorev, Felix Hagemann, David Hervas Aguilar, Johanna Lührs, Julia Penner, Oliver Schulz

Medical Physics · Cross-listed from cs.RO

OSCAR: An Ovipositor-Inspired Self-Propelling Capsule Robot for Colonoscopy

Self-propelling robotic capsules eliminate shaft looping of conventional colonoscopy, reducing patient discomfort. However, reliably moving within the slippery, viscoelastic environment of the colon remains a significant challenge. We present OSCAR, an ovipositor-inspired self-propelling capsule robot that translates the transport strategy of parasitic wasps into a propulsion mechanism for colonoscopy. OSCAR mechanically encodes the ovipositor-inspired motion pattern through a spring-loaded cam system that drives twelve circumferential sliders in a coordinated, phase-shifted sequence. By tuning the motion profile to maximize the retract phase relative to the advance phase, the capsule creates a controlled friction anisotropy at the interface that generates net forward thrust. We developed an analytical model incorporating a Kelvin-Voigt formulation to capture the viscoelastic stick–slip interactions between the sliders and the tissue, linking the asymmetry between advance and retract phase durations to mean thrust, and slider-reversal synchronization to thrust stability. Comprehensive force characterization experiments in ex-vivo porcine colon revealed a mean steady-state traction force of 0.85 N, closely matching the model. Furthermore, experiments confirmed that thrust generation is speed-independent and scales linearly with the phase asymmetry, in agreement with theoretical predictions, underscoring the capsule's predictable performance and scalability. In locomotion validation experiments, OSCAR demonstrated robust performance, achieving an average speed of 3.08 mm/s, a velocity sufficient to match the cecal intubation times of conventional colonoscopy. By coupling phase-encoded friction anisotropy with a predictive model, OSCAR delivers controllable thrust generation at low normal loads, enabling safer and more robust self-propelling locomotion for robotic capsule colonoscopy.
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All authors Mostafa A. Atalla, Anand S. Sekar, Remi van Starkenburg, David J. Jager, Aimée Sakes, Michaël Wiertlewski, Paul Breedveld

Atomic Physics · Cross-listed from astro-ph.IM

GPS constellation search for exotic physics messengers coincident with the binary neutron star merger GW170817

The Global Positioning System (GPS) includes a continuously operating, planet-scale network of atomic clocks that, beyond navigation and time dissemination, enables precision tests of fundamental physics. Here we use GPS carrier phase archival data to perform a retrospective search for exotic low-mass fields (ELFs) that might be emitted by the binary neutron-star merger GW170817, complementing gravitational wave and electromagnetic modalitiesnin multi-messenger astronomy. Such ultra-relativistic fields would imprint a dispersive, anti-chirp signature in clock-frequency time series, delayed with respect to the LIGO-Virgo gravitational wave detection. We construct network-median pseudo-frequency data from eighteen Rb satellite clocks referenced to a terrestrial hydrogen maser and conduct a template-bank search spanning ELF pulse duration, arrival delay, and characteristic frequency. No statistically significant signal is observed after accounting for noise statistics and template-bank trials. We derive 95% confidence-level lower bounds on the interaction energy scale $\Lambda_\alpha$ of quadratic couplings driving variations in electromagnetic fine-structure constant. These limits improve upon existing astrophysical and gravity-test constraints across the ELF-energy range $\approx10^{-18}$–$10^{-14}\,\mathrm{eV}$. This demonstrates that mature global satellite-clock networks provide an observational capability for retrospective, multi-messenger searches for new physics using decades of archival timing data.
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All authors Arko P. Sen, Geoffrey Blewitt, Andrey Sarantsev, Paul Ries, Andrei Derevianko

Atomic Physics

Highly correlated electronic bounding and spin effect: confirmation of an autodetaching state of O$^-$

The existence of an auto-detaching state of O$^-$ with a lifetime on the scale of a hundred nanoseconds is demonstrated both experimentally and theoretically. The O$^-$ lifetime values are determined using two recently developed methods. The experimental approach is based on a derivation from measured electron-loss cross sections combined with time-of-flight spectrometry. For the theoretical approach, the continued Green's function within the formalism of Fano-Feshbach is applied. We present the measured lifetime value of $100 \pm 10 \text{ ns}$. The calculated lifetime value is 75 ns, and is associated with the (2p$^3$3s$^2$)$^4$S state of O$^-$. We discuss how the existence of a 100-ns-lifetime oxygen metastable anion can impact the modeling of oxygen-containing systems.
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All authors Marcelo M. Sant'Anna, Aldo A. Martínes-Calderón, Ginette Jalbert, A. B. Rocha, Guillermo Hinojosa

Monday 16 February

Physics and Society

Cross-disciplinary integration towards sustainable construction

The built environment is the basis for human experience in the world, yet its current practices contribute significantly to global greenhouse gas emissions, resource depletion, and environmental degradation. This chapter explores the critical role of cross-disciplinary integration in achieving sustainable construction, emphasising the need to bridge the gaps between material science, architecture, engineering, environmental studies, and social sciences. By examining past and present examples and trends we explore how holistic, systems-oriented approaches can drive innovation and sustainability. We examine how the siloed nature of modern disciplines has hindered progress, leading to fragmented outcomes and missed opportunities for circularity and resource efficiency. We present the case for a paradigm shift towards cross-disciplinarity, where stakeholders across sectors and disciplines collaborate to create cohesive solutions that balance technical and economic performance, environmental stewardship, and social equity. This chapter addresses the economic and regulatory barriers that impede the adoption of sustainable materials and practices, advocating for structural changes in education, industry, and policy and highlighting the tools that are now enhancing this integration of knowledge. Ultimately, this work underscores the transformative potential of cross-disciplinary integration in redefining the built environment, offering a roadmap for achieving sustainability through collaboration, innovation, and a shared commitment to planetary well-being.
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Fluid Dynamics · Cross-listed from cond-mat.soft

The effect of water on granular liquid flows: from debris to mud flows

In this work, we show how the rheology of granular suspensions can be related to the properties of the fluctuations of the velocity field inside the medium. In particular, effective Navier-Stokes equations in the different flow regimes are constructed and compared to an actual geophysical model that was so far purely phenomenological. Then, it is shown that a direct cascade of kinetic energy is present when the flow becomes turbulent, but with a scaling law that is quantitatively very different from that of usual Newtonian fluids.
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Computational Physics · Cross-listed from math-ph

Conductive Heat Flux Driven by a Pressure Gradient in Non-Maxwellian Reference States

Standard Navier–Stokes–Fourier theory and Maxwellian-based Grad 13-moment closures yield no independent pressure-gradient driving of the conductive heat flux in an isothermal, single-component gas in the hydrodynamic (small-Knudsen) regime. This absence is specific to the Maxwellian local-equilibrium weight. We show that when the closure is constructed about a generalized class of isotropic non-Maxwellian reference weights with finite fourth moment – characterized by a single shape parameter (a kurtosis-like moment ratio) that deforms the distribution continuously away from a Maxwellian – the small-Knudsen constitutive reduction retains a bulk pressure-gradient (barothermal) contribution to the conductive heat flux. This mechanism predicts pressure-driven conduction as a direct kinetic signature of non-Maxwellian equilibrium moment structure.
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Fluid Dynamics

On the turbulent wake of the actuated fluidic pinball: dynamics, bifurcations and control authority

We present the first comprehensive experimental and numerical study featuring the turbulent wake of the fluidic pinball for a large actuation range. The fluidic pinball is a cluster of three equal circular cylinders centered on the vertices of an equilateral triangle, pointing upstream in uniform flow. This configuration has become a canonical benchmark for control-oriented reduced-order modeling, for nonlinear control design and for a large kaleidoscope of drag reduction mechanisms. While the literature covers well the laminar two-dimensional Reynolds number regime, we focus on unexplored terra incognita: experiments of the symmetrically actuated turbulent regime at a Reynolds number of Re=9100. In other words, the upstream cylinder is kept stationary, while the two downstream cylinders rotate with equal and opposite angular velocities. A large range of base-bleeding and boat-tailing actuation parameters is investigated with time-resolved particle image velocimetry and aerodynamic force measurement with a companion Reynolds-averaged Navier-Stokes simulation. Our results indicate that the turbulent wake of the fluidic pinball can be approximated by a three-dimensional actuation manifold comprising two inverse pitchfork bifurcations. In the boat-tailing limit, a reduced control authority with a new low-frequency shedding state is observed.
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All authors Alicia Rodríguez-Asensio, Luigi Marra, Ignacio Andreu-Angulo, Andrea Meilán-Vila, Juan Alfaro Moreno, Guy Y. Cornejo Maceda, Bernd R. Noack, Andrea Ianiro, Stefano Discetti

Chemical Physics

HBAT 2: A Python Package to Analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures

Hydrogen bonds and other non-covalent interactions play a crucial role in maintaining the structural integrity and functionality of biological macromolecules such as proteins and nucleic acids. Accurate identification and analysis of these interactions are essential for understanding molecular recognition, protein folding, and drug design. HBAT (Hydrogen Bond Analysis Tool) is software for analysing hydrogen bonds and other weak interactions in macromolecular structures. This paper presents HBAT 2, an updated Python reimplementation of the original HBAT tool published in 2007. HBAT 2 is a Python package for automated analysis of hydrogen bonds and other non-covalent interactions in macromolecular structures available in Protein Data Bank (PDB) file format. The software identifies and analyses traditional hydrogen bonds, weak hydrogen bonds, halogen bonds, X-H$\cdots$$\pi$, $\pi$-$\pi$ stacking, and n$\rightarrow$$\pi$* interactions using geometric criteria. It also detects cooperativity and anticooperativity chains and renders them as 2D visualisations. The latest version offers improved cross-platform tkinter-based graphical user interface (GUI), a web-based interface, a simple command-line interface (CLI), and a developer-friendly API, making it accessible to users with different computational backgrounds.
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Chemical Physics

High-throughput screening and mechanistic insights into solid acid proton conductors

Proton-conducting solid acids could enable water-free operation of high-temperature fuel cells. However, systematic materials screening has, hitherto, been computationally prohibitive. Here, we introduce a two-stage high-throughput screening strategy that directly computes proton diffusion coefficients, enabled by machine-learned interatomic potentials fine-tuned to ab initio data. Starting from more than six million materials, our screening – based on structural motifs rather than empirical descriptors – identifies $27$ high-performing proton conductors, including over ten previously unexplored compounds. These include sustainable and commercially available materials, candidates that have not yet been synthesized, organic systems that fall outside conventional design rules, and known proton conductors that validate our approach. Importantly, our findings reveal a universal oxygen–oxygen distance of approximately $2.5$~Å at the moment of proton transfer across diverse chemistries, providing mechanistic insight and showing that macroscopic proton conductivity emerges from the interplay between anion rotational dynamics, hydrogen-bond network connectivity, and proton-transfer probability.
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All authors Jonas Hänseroth, Max Großmann, Malte Grunert, Erich Runge, Christian Dreßler

Atmospheric and Oceanic Physics · Cross-listed from astro-ph.EP

Multi-Arrival Infrasound from Meteoroids: Fragmentation Signatures versus Propagation Effects in a Fine-Scale Layered Atmosphere

Infrasonic signatures of meteoroid fragmentation are frequently ambiguous: do multiple arrivals signify a complex breakup or merely the distorting effects of a layered atmosphere? Resolving this ambiguity is critical for accurate energy estimates and source reconstruction. In this study, we address this challenge by analyzing a unique regional dataset of well-constrained meteoroid events observed by the Southern Ontario Meteor Network and the co-located Elginfield Infrasound Array. We employ pseudo-differential parabolic equation (PPE) simulations to quantify how fine-scale gravity-wave structures in the stratosphere and lower thermosphere modify acoustic waveforms at ranges <300 km. Our modeling reveals that while fine-scale layering can stretch signals and generate diffuse oscillatory tails, it does not produce discrete, high-amplitude pulse splitting at ranges below ~140 km. By applying these results to the rare multi-arrival event 20060305, we demonstrate that its distinct double arrival at 100 km range is inconsistent with atmospheric multipathing and provides definitive evidence of separate fragmentation episodes. These findings establish new diagnostic criteria for separating source physics from propagation artifacts, improving the reliability of infrasound as a monitoring tool for natural bolides, space debris re-entries, and catastrophic launch failures.
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All authors Igor P. Chunchuzov, Oleg E. Popov, Elizabeth A. Silber, Sergey N. Kulichkov

Physics and Society

Environment-Driven Emergence of Higher-Order Collective Behavior

Collective behavior is commonly attributed to direct interactions among system components. Using a minimal stochastic model, we show that higher-order collective structure can instead emerge from shared stochastic environments, even in the absence of interactions. Quantified via the O-information, environmental fluctuations induce both redundant and synergistic dependencies, with the latter occupying larger regions of the correlation space. We establish a no-go theorem showing that time-independent coupling between the system variables and a shared stochastic environment rules out synergistic higher-order behavior. Crucially, this constraint can be overcome dynamically: transitions between redundancy and synergy arise from time-dependent environmental coupling or from the nontrivial interplay between shared environments and direct interactions. Together, these results identify environmental mediation as a distinct mechanism of higher-order collective organization beyond the conventional interaction-centric paradigm.
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All authors Felipe S. Abril-Bermúdez, David N. Fisher, Jean-Baptiste Gramain, Francisco J. Pérez-Reche

Optics

Systematic Design and Demonstration of Multipole, Coupled-Cavity Integrated Photonic Bandpass Filters with High FSR, High-Q Single-Mode Microresonators in Low-Loss Silicon Nitride Platform

Tunable, low-loss, narrowband, and frequency-stabilized filters play a critical role in the realization of transceivers for efficient signal processing in telecommunications and sensing applications in the presence of strong interference and noise. We systematically design, fabricate, and demonstrate multi-cavity, multipole integrated photonic bandpass filters with gigahertz to sub-gigahertz bandwidths. The filters feature ultra-wideband tunable center frequencies exceeding 400 GHz, ultra-low insertion loss, steep roll-off, and compact footprints, making them suitable for radio-frequency, microwave, and millimeter-wave front-end applications. Using a set of design principles for multi-cavity high-order filters together with supporting nanofabrication techniques in a silicon nitride platform, the demonstrated filters achieve record-high figures of merit and advance the state of the art in integrated photonic filtering for radio-frequency, microwave, and millimeter-wave systems. The resonator structures, which are the key building blocks enabling the reported performance, combine a large free spectral range of approximately 70 GHz with a high quality factor of 2.1 times ten to the power of seven. This performance is enabled by combining wide multimode waveguide segments with narrow single-mode regions connected through adiabatic tapers. To the best of our knowledge, the experimentally demonstrated bandwidth of 520 MHz, tuning range of one free spectral range, filter insertion loss of 2 dB, and out-of-band rejection ratios of up to 55 dB represent record performance metrics for integrated photonic filtering of radio-frequency, millimeter-wave, and terahertz signals.
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All authors Amir H Hosseinnia, Abdel Karim El Amili, Yu-hung Lai, Danny Eliyahu, Mohammad Enjavi, Lute Maleki, Ali Adibi

Computational Physics

Analysis of Fission Matrix Databases using Temperature Profiles obtained from High-Fidelity Multiphysics Simulations

The Fission Matrix method is used to perform fast and still accurate neutronics simulations. It relies on precalculated databases obtained through a Monte Carlo simulation. To represent every state of the reactor, multiple databases are required. The actual state of the reactor is obtained from those databases. In this paper, we analyze the effect of the temperature profiles selected to construct the databases. To do so, the Molten Salt Fast reactor is selected. Two sets of databases are studied: the first uses temperature profiles obtained from high-fidelity Multiphysics simulations with Cardinal, and the second uses uniform temperature profiles. Results showed improved multiplication factor and fission source distribution when the temperature profiles used to generate the databases were similar to those expected when solving the fission matrix.
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All authors Maximiliano Dalinger, Elia Merzari, Saya Lee, Alex Nellis

Fluid Dynamics

Global phase-space geometry of three-dimensional gliding: terminal velocity manifolds, separatrices, and stability structure

We develop a three-dimensional dynamical-systems framework for passive gliding and identify the global phase-space structures that organize its motion. Extending previous two-dimensional models of non-equilibrium gliding, we show that the 3D velocity dynamics possess an attracting, normally hyperbolic invariant surface, the terminal velocity manifold (TVM), onto which all trajectories rapidly collapse before evolving slowly toward a glide equilibrium. There is also a separatrix surface associated with an invariant manifold of an unstable equilibrium within the TVM, which partitions initial conditions into qualitatively distinct descent behaviors: efficient shallow glides versus steep, drag-dominated descent. Using lift-drag data from three representative airfoils–a snake-inspired bluff body, the Zimmerman planform characteristic of Draco lizards, and the classical NACA 0012–we compute the full equilibrium surfaces, analyze their pitch-roll bifurcations, and reconstruct the TVM and separatrix geometry in three dimensions. The results reveal that (i) equilibrium stability changes with both pitch and roll, rather than pitch alone; (ii) separatrix geometry determines the dynamic accessibility of shallow glides; and (iii) bio-inspired airfoils possess compact separatrix regions that make efficient gliding robust across a wide range of initial jump conditions. This work unifies biological and engineered gliders within a single global geometric framework and establishes separatrix geometry on the TVM as a principled diagnostic for glide robustness.
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Atomic Physics

Strong Collective Chiroptical Response from Electric-Dipole Interactions in Atomic Systems

Chiroptical responses in atomic systems are usually weak, as they arise from the interference between electric- and much weaker magnetic-dipole transitions. We show that atoms arranged in chiral geometries can instead exhibit a strong collective chiroptical response mediated entirely by electric-dipole interactions. Using a coupled-dipole framework, we identify a regime of pronounced chiroptical response emerging at subwavelength interatomic separations, which can be tuned by the probe frequency. This enhancement is directly linked to the formation of subradiant collective modes. Our results establish a fundamental connection between geometric chirality and collective light-matter interactions, opening new pathways for engineering and exploiting chiral optical responses in atomic systems.
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Physics Education

Navigating Hype, Interdisciplinary Collaboration, and Industry Partnerships in Quantum Information Science and Technology: Perspectives from Leading Quantum Educators

The rapid advancement of quantum information science and technology (QIST) has generated significant attention from people in academia, industry, and the public. Recent advances in QIST have led to both opportunities and challenges for students and researchers who are curious about the potential of the field amid hype, considering whether their skills are aligned with what the field needs, and contemplating how collaborating with industries may impact their research. This qualitative study presents perspectives from leading quantum researchers who are educators on three critical aspects shaping QIST's development: (1) the impact of hype in the field and strategies for managing expectations, (2) approaches to creating conducive environments that attract students and established researchers from non-physics disciplines, and (3) effective models for fostering university-industry partnerships that can be valuable for students and researchers alike. These aspects, along with several interconnected challenges, were explored through in-depth interviews with quantum educators. Our findings reveal nuanced perspectives on managing the hype cycle and its risks in creating unrealistic expectations. Regarding greater interdisciplinary engagement and attracting more non-physicists to QIST, educators emphasized the need to recognize and leverage existing expertise from other fields while developing educational pathways that meet diverse student backgrounds to prepare them for the QIST workforce. On university-industry partnerships, respondents highlighted successful models, while noting persistent challenges around intellectual property, confidentiality, and differing organizational goals. These insights provide valuable guidance for educators, policymakers, and industry leaders working to build a sustainable quantum workforce while maintaining realistic expectations about the field's trajectory.
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