Chemical Physics
Dual-Resonator Organic Microcavities for Triplet-Triplet Annihilation Upconversion
Robert H. Gordon, Rachel C. Kilbride, Michael Hutton et al. (+2 more)
Solid-state triplet-triplet annihilation upconversion offers a compelling route to harvest sub-bandgap
photons to increase the efficiency of photovoltaics, but low sensitizer doping required to suppress non-radiative aggregation quenching severely restricts light absorption. Here, we present a dual-resonator planar silver microcavity housing a thermally co-evaporated rubrene:palladium phthalocyanine (PdPC) active layer designed to simultaneously enhance triplet-sensitizer absorption and out-couple upconverted emission. By aligning a dispersive cavity mode with the PdPC absorption peak at $32^\circ$, we achieve a 12-fold enhancement in absorptance at 665 nm. This absorption boost, combined with directional outcoupling through a second cavity mode, outweighs cavity-induced reabsorption losses to yield a 22-fold peak and 4.5-fold integrated enhancement in detected upconversion emission. Overall, this work highlights the potential of microcavity integration to substantially enhance solid-state upconversion performance across low-intensity optoelectronic applications.
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All authors Robert H. Gordon, Rachel C. Kilbride, Michael Hutton, Jenny Clark, Robert D. J. Oliver
Chemical Physics · Cross-listed from cs.LG
PairIT: Autoregressive Transformers for Low-Data Molecule Optimization
Hannah Lawrence, Bodhi P. Vani, Ji Won Park et al. (+5 more)
Generating novel molecules with desired properties is a central challenge in drug discovery. Although foundational work focused on de novo generation, practical use cases require a more complex setting: conditioning on an initial seed molecule, optimizing multiple properties, and operating in data-sparse regimes. We introduce PairIT, a flexible training framework for autoregressive
transformers over SMILES sequences that enables seeded generation by learning from pairs of structurally similar molecules. By leveraging matched pairs, the model learns to generate local, chemically meaningful edits that improve a property of the seed molecule.
Prompt tokens extend this framework by specifying the target property, desired direction, and approximate magnitude of change. Multiple
prompt tokens can be concatenated to enable multi-property optimization at inference time. For properties where pair supervision alone is insufficient, reinforcement learning post-training can further improve optimization, providing a tunable trade-off between proximity to the seed and the optimization objective. PairIT naturally supports pretraining on a large
dataset and fine-tuning on a smaller
dataset, which is critical for performance in data-sparse regimes. Surprisingly, we observe diminishing returns to the scale of the pretraining
dataset. We demonstrate empirically on MoleculeNet and Therapeutics Data Commons
datasets that, with appropriate paired-data curation, a standard
transformer model of modest size (68M parameters) can achieve robust seeded molecular optimization in low-data regimes.
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All authors Hannah Lawrence, Bodhi P. Vani, Ji Won Park, Natasa Tagasovska, Samuel Don Stanton, Andrew Martin Watkins, Michael Maser, Ewa M. Nowara
Chemical Physics · Cross-listed from quant-ph
Post-Optimization Subspace Corrections to Quantum Ansätze
Prince Frederick Kwao, Bharath Sambasivam, Jason Saroni et al. (+3 more)
Circuit depth and measurement count are the main limitations for chemical applications of the leading variational
quantum algorithms on
quantum computers. We show that both resource requirements can be reduced by augmenting adaptive variational
quantum algorithms with post-optimization corrective techniques. We focus on two such techniques—
Hamiltonian-moment Krylov subspace diagonalization and the identity-augmented
quantum self-consistent equation of motion (q-sc-EOM)—applied to optimized ADAPT-VQE states without further ansatz growth or nonlinear optimization. Across molecular systems studied with up to 20
qubits, first-order Krylov correction reduces the optimized iterations (and the corresponding number of adaptive layers) needed to reach the $1.6~\mathrm{m}E_h$ threshold by up to approximately sixfold, with a general trend toward larger reductions at higher determinant Rényi
entropy. We also find measurement-cost reductions of up to approximately fortyfold using a suitable resource-cost model. Identity-augmented q-sc-EOM improves molecular potential-energy curves obtained from truncated ADAPT-VQE ansätze with limited expressivity and recovers accuracy from states produced by sampled operator ranking without additional gradient-based operator selection, providing an advantage when small pool gradients make selection measurement intensive. Together, these post-optimization corrections offer routes to improve energy accuracy and reduce adaptive
circuit growth in
quantum algorithms as
quantum hardware advances.
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All authors Prince Frederick Kwao, Bharath Sambasivam, Jason Saroni, Srivathsan Poyyapakkam Sundar, Edwin Barnes, Ayush Asthana
Chemical Physics
A basis-set-free reference for the exact exchange-energy density and functional development
Alastair J. A. Price
The exact local exchange-energy density, obtained from the Slater potential of the Hartree-Fock exchange hole, is a central ingredient of Becke's B05 and B13 functionals and of many other local hybrids. It is usually evaluated in a Gaussian basis, so the local quantity retains a pointwise basis-set incompleteness error. We describe here a basis-set-free numerical code that solves the Kohn-Sham problem on real-space grids for atoms, diatomics, and polyatomics, and returns the exact local exchange-energy density together with the density, its derivatives, the kinetic-energy density, and the reverse Becke-Roussel hole quantities. Reconstructed from the published record of Becke's non-public NUMOL code, AXEL reproduces numerical atomic references through krypton, scalar-relativistic uranium orbital energies, and Becke's diatomic spectroscopic constants. We then extend the original local-density numerical framework to generalized-gradient and hybrid functionals. Comparisons with the independent adaptive-multiwavelet code MRChem give sub-millihartree agreement for Hartree-Fock and PBE0. The same calculations agree with large Gaussian-basis references to a similar level of accuracy. Atom-centred eXact Electronic Limit (AXEL) is intended as both a basis-set-free numerical reference and a platform for exchange-hole-based density-functional development.
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Chemical Physics · Cross-listed from stat.ML
Joint Neural Posterior Estimation and Model Selection for Chemical Reaction Networks
J. Arturo Esquivel, Jorge A. Campos-Gonzalez-Angulo, Sergio Pablo-García et al. (+2 more)
Simulation-based
Bayesian inference for Chemical Reaction Networks (CRNs) must simultaneously solve two computationally demanding problems: discriminating between overlapping reaction pathways and estimating reaction rate constants. Classical approaches, such as Sequential Monte Carlo ABC, rely on handcrafted summary statistics and scale poorly across large parameter spaces. To overcome this, we introduce a neural inference architecture. Our pipeline utilizes shared 1D-CNNs and a permutation-invariant Set
Attention mechanism to learn low-dimensional summary statistics from variable-length, multi-experiment time-series data. These statistics simultaneously condition a model selection network to compute posterior model probabilities and model-specific conditional Invertible Neural Networks (cINNs) that estimate parameter posterior distributions. We demonstrate the practical utility of our approach on a real protodeboronation example, illustrating how it handles structural ambiguity and extracts kinetic parameters from competing catalyst deactivation pathways.
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All authors J. Arturo Esquivel, Jorge A. Campos-Gonzalez-Angulo, Sergio Pablo-García, Alán Aspuru-Guzik, Vianey Leos-Barajas
Chemical Physics
Embossing of Tapered, Isometric Micro-Interdigitated Flow Fields for Enhanced Desalination by Faradaic Deionization
Md Habibur Rahman, Sadia Afrin and Kyle C. Smith
Engineered transport architectures can improve electrolyte distribution and active-material utilization in porous electrodes, yet their implementation remains limited by fabrication methods that compromise precision, throughput, active-material preservation, or scalability. Here, an integrated embossing-calendering method is introduced to pattern Prussian blue analog (PBA) porous electrodes with embedded, micro-interdigitated flow fields (e$\mu$-IDFFs) for electrochemical desalination. This non-subtractive, roll-to-roll compatible method forms channels by controlling plastic deformation while simultaneously calendering the electrode, preserving active material and reducing patterning time by 100-fold relative to mechanical milling. Indentation experiments and a closed-form model further show that embossing requires 15-fold less force than stamping, while electrode microstructures show local densification beneath embossed channels. PBA electrodes are embossed with novel e$\mu$-IDFFs that use continuous width-tapering with isometric flow paths that promote uniform electrolyte distribution, increase rate capability, and reduce polarization. Compared with e$\mu$-IDFFs patterned using less scalable means and non-isometric flow paths, these e$\mu$-IDFFs desalinate seawater-salinity feeds near to potable levels with 1.5-fold of its thermodynamic energy efficiency and water recovery. Brackish desalination benefits similarly. Tapered, isometric e$\mu$-IDFFs and the embossing method introduced to pattern them are readily translated other electrochemical energy storage and separations systems.
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Chemical Physics
Ensuring Complete Consistency between Hops and Wavefunction Propagation in Fewest-Switches Surface Hopping
Jonathan R. Mannouch
Fewest-switches surface hopping (FSSH) is a popular and versatile approach for performing dynamical simulations beyond the Born-Oppenheimer approximation, in which nonadiabatic effects are incorporated through
stochastic hops of the active potential energy surface. However, the FSSH
algorithm does not ensure that hops are completely consistent with the underlying electronic wavefunction dynamics. This can lead to significant errors as well as requiring small propagation time steps, which can significantly compromise the computational efficiency of the method. These problems are known to be particularly severe at so-called trivial crossings, for which the nonadiabatic coupling is entirely localized at the crossing point. Here, we solve the trivial-crossing problem by developing a fully-consistent hopping-probability formula, which generates attempted hops that match the time-
evolution of the wavefunction across any size time step by construction. A state-tracking
algorithm is also utilized to ensure that attempted hops are always accepted at trivial crossings. Through application to systems that contain extremely challenging trivial crossings, we demonstrate that this hopping scheme is capable of obtaining highly accurate results, even when large propagation time steps are used.
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Chemical Physics · Cross-listed from cond-mat.stat-mech
Extending the mean first-passage-time formalism to the reconstruction of high free-energy barriers: A top-start approach
Ying Jiang and Ivan Saika-Voivod
Rare events, such as
crystal nucleation in mildly supercooled
liquids, are characterized by waiting times that can be much longer than the timescale of the underlying microscopic dynamics. The mean first-passage time (MFPT) formalism [J. Wedekind and D. Reguera, J. Phys. Chem. B 112, 11060 (2008)] provides a route to reconstruct one-dimensional free-energy profiles from the MFPT and steady-state distribution measured along a reaction coordinate, but conventional implementations become inefficient for sufficiently high barriers because spontaneous crossings are rarely observed. We introduce a "top-start" extension that initiates trajectories near the barrier top and reconstructs the free-energy profile from their subsequent
evolution away from the barrier toward lower-free-energy regions. We establish the equivalence between the top-start and two-region constructions using a Markov-chain transition-
matrix formulation. We validate the method using one-dimensional random-walk simulations across low, medium, and high free-energy barriers, with transition-
matrix calculations providing an exact
benchmark for the corresponding discretized models. The top-start reconstruction remains accurate in the high-barrier regime where conventional MFPT sampling becomes prohibitively inefficient.
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Chemical Physics · Cross-listed from cs.LG
Does Pretraining Teach Chemical Language Models Chemistry?
Leif Sieben and Yoel Zimmermann
Chemical
language models (CLMs) are pretrained on large corpora of molecules with the aim of learning representations that transfer to diverse downstream tasks. Here, we systematically study the effects of pretraining using a series of such CLMs across 64 molecular property prediction
datasets. We find that the downstream gains of pretraining in CLMs do not scale and performance saturates below gradient-boosting baselines. Across the regimes evaluated, only supervised pretraining on traditional physico-chemical descriptors consistently improves downstream performance for the CLMs tested whereas some forms of pretraining result in models worse than a randomly initialized encoder. While models can resolve molecular structure well, they do so no better than a randomly initialized model, suggesting that, at best, CLMs learn descriptor-like properties in addition to low-level
token statistics during pretraining, but surprisingly little chemistry beyond what classical molecular features already capture.
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Chemical Physics · Cross-listed from cond-mat.mtrl-sci
A Transferable Machine-Learned Potential Enabling Large-Scale Copper-Carbon Simulations from Equilibrium to Extreme Conditions
Feiyu Zhou, Wei Qiu, Yan Chen et al. (+4 more)
Cu-C materials and interfaces are central to diamond thermal management, metallization,
graphene growth and carbon-coating technologies, but atomistic simulations across these applications require a potential that describes metallic Cu, diverse carbon bonding, heterogeneous Cu-C interactions and close atomic encounters. Here we develop NEP-CuC, a transferable neuroevolution potential trained on a
dataset of 2,727 uniformly relabelled configurations selected from a heterogeneous Cu-C candidate pool. Disagreement within an ensemble of five independently trained models provides an internal indicator of model sensitivity. A Ziegler-Biersack-Littmark (ZBL) correction describes short-range nuclear repulsion, while a runtime D3(BJ) correction supplements dispersion-sensitive calculations. Tests on source-derived held-out and independent external
datasets, together with structural, elastic, defect, interfacial, vibrational and finite-temperature transport
benchmarks, establish broad but property-dependent physical fidelity across elemental Cu, diverse carbon environments and heterogeneous Cu-C configurations. Large-scale simulations of amorphous-carbon formation and orientation-dependent shock compression of Cu further test transferability under strongly non-
equilibrium conditions. For Cu/diamond interfaces, the same potential describes deposition, annealing and tensile response: preparation history leaves persistent differences in interphase structure, while the mean peak nominal tensile stress at 500 K decreases from $12.35\pm0.71$ to $6.65\pm0.98$ GPa as the incident Cu energy during the initial deposition stage increases from 1 to 50 eV. NEP-CuC provides an atomistic framework for linking processing, interfacial structure and physical response across Cu-C systems, with direct relevance to Cu/diamond thermal-management interfaces, diamond metallization and non-
equilibrium Cu-C processing.
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All authors Feiyu Zhou, Wei Qiu, Yan Chen, Jiahui Liu, Yilun Liu, Shengying Yue, Penghua Ying
Chemical Physics · Cross-listed from cond-mat.soft
Ionic gradients shape the spatial organization and dynamics of supramolecular polymers
Claudio Perego, Annalisa Cardellini, Andrea Tagliabue et al. (+1 more)
Living supramolecular materials such as microtubules and actin filaments assemble and function in dynamic, heterogeneous environments, subject to chemical concentration gradients. Their rapid and precise response to such gradients—via aggregation, disassembly, or autonomous motion—underlies the fine spatiotemporal control typical of living systems. Reproducing such responsiveness in synthetic materials is a central challenge in materials science and requires a molecular-level understanding of how gradients couple to supramolecular structure and dynamics, which remains difficult to access experimentally. To this end, we combine implicit-solvent coarse-grained molecular dynamics (MD) with the constant chemical potential MD (C${\mu}$MD) technique to investigate, at molecular resolution, the coupling of two prototypical supramolecular
polymer models with externally imposed ionic concentration gradients. Despite their contrasting responses to homogeneous ionic conditions, both systems undergo pronounced spatial reorganization under the gradient, generating regions of locally enhanced supramolecular activity that are inaccessible to homogeneous systems with the same overall content of self-assembling species. Crucially, the local supramolecular dynamics is largely determined by the local concentrations, consistent with the formation of local quasi-
equilibria: this direct connection between spatial composition and supramolecular activity emerges as a common governing principle across the two models. These findings shed light on the spatially complex supramolecular response that can be triggered by chemical gradients, and show how a single gradient simulation can encode this response across a continuous range of local chemical environments, thus providing a general strategy to investigate and design materials operating under spatially heterogeneous conditions.
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All authors Claudio Perego, Annalisa Cardellini, Andrea Tagliabue, Giovanni M. Pavan
Chemical Physics · Cross-listed from physics.atom-ph
Collision inside an atom: quantum ion-atom dynamics
Arijit Das, Yufeng Wang, Marcin Welter et al. (+6 more)
Rydberg atoms occupy a central role in
quantum science; their loosely bound outer electron gives rise to properties that enable
quantum information processing1 or the formation of exotic molecular bonds2. Beyond these roles, they have been proposed as a neutral platform for the observation of
quantum effects in collisions and reactions of the ionic core with neutral particles3, 4, a long-standing goal of ion-based chemistry and physics. However, all of the experimental results so far could be explained using a classical description of the internuclear motion5. Here we demonstrate cold collisions inside a Rydberg helium atom, achieved by merging helium Rydberg and ground-state helium beams and imaging individual scattering events. We resolve the fully
quantum-coherent motion and observe matter-wave diffraction and tunnelling-driven shape resonances down to collision energies of 90 mK. In the case of identical helium
nuclei, we demonstrate a new regime of identical-particle Mott interference6, where
quantum statistics begin to govern the total scattering cross section. For distinct isotopes, we show the breakdown of the Born-Oppenheimer approximation and
benchmark parameter-free, state-of-the-art theory. We directly measure the helium isotope ionization-energy difference to be 15.0 +/- 0.1 K. Our experiments establish Rydberg atoms as a platform for the direct observation of
quantum dynamics with a general class of ions, atoms and molecules.
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All authors Arijit Das, Yufeng Wang, Marcin Welter, Karl Horn, Dawid Dąbrowski, Michał Przybytek, Julia Narevicius, Michał Tomza, Edvardas Narevicius
Chemical Physics
Extrapolating Collisional Rate Coefficients for Molecules of Astrophysical Interest Using Neural Networks
Yigit Ergen and Jérôme Loreau
State-to-state rate coefficients for inelastic molecular collisions are essential inputs for non-local thermodynamic
equilibrium radiative transfer models, yet their computation using
quantum scattering methods is prohibitive for large molecules and highly excited rotational states. We investigate the ability of artificial neural networks to extend existing
datasets of collisional excitation rate coefficients without performing additional scattering calculations. A multilayer perceptron model was trained using molecular
quantum numbers, level energies, energy gaps, and kinetic temperature as descriptors, and optimized on logarithmic rate coefficients. The model was tested on diverse collision systems ranging from simple diatomic molecules (CO, SiO) to open-shell species (SO), small asymmetric tops (H$_2$O, SO$_2$), and complex organic molecules (benzonitrile and vinyl cyanide) colliding with H$_2$ molecules or He atoms. Extrapolations were performed toward higher rotational levels, higher temperatures, and combinations of both. For most systems, predictions of rate coefficients involving previously unseen rotational states yielded mean error factors between 1.1 and 1.5, with the dominant rate coefficients generally reproduced more accurately than weaker transitions. Temperature extrapolations proved particularly successful, while combined extrapolations in temperature and rotational levels remained accurate to within a factor of two in most cases. The prediction quality depends on the interplay between
dataset size, temperature range, molecular complexity, and the presence of clear collisional propensity rules. Overall, the approach demonstrates that machine learning can provide a practical route to extending collisional
datasets for astrophysical applications, especially for large molecules for which additional
quantum-scattering calculations are computationally demanding.
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Chemical Physics
Photoinduced Modulation of Rectification and Charge Transport in Diarylethene-Viologen Molecular Junction
Sofyan Tahri, Samuel Decorps, Stephane Lenfant et al. (+2 more)
Large-area molecular junctions combining photochromic and redox-active functionalities provide an attractive platform for controlling charge transport by light. In this work, we study Au/DAEVIO/Ti/Au molecular junctions incorporated with electro-grafted layers of diarylethene-viologen with thicknesses of 12-16 nm. In the initial OFF state, the junctions exhibit low current densities and strong rectification, with a rectification ratio of 300 at 1V. Temperature-dependent measurements reveal a thermally assisted contribution at higher temperatures and a much weaker temperature dependence below 160-180K, consistent with multistep charge transport through molecular and/or interfacial states rather than direct coherent tunneling across the entire molecular layer. Under continuous in situ 385 nm irradiation, the electrical response is strongly and asymmetrically modified. The current density at +1V increases by a factor of 200, while the negative-bias current is only weakly modified, reducing the rectification ratio from 300 to 2. Illumination also produces a nonzero short-
circuit current density of + 0.006mA cm-2 and an open-
circuit voltage of -0.45V. These results indicate that irradiation simultaneously modifies molecular charge transport and generates a measurable photoelectric response. This behavior is consistent with light-induced changes in electronic coupling associated with DAE photocyclization, combined with photoinduced charge generation and field-dependent charge separation involving the redox-active viologen units and asymmetric electrode interfaces.
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All authors Sofyan Tahri, Samuel Decorps, Stephane Lenfant, Denis Frath, Imen Hnid
Chemical Physics · Cross-listed from cond-mat.stat-mech
Organisation and aggregation of calcium carbonate ions in water via molecular simulation
Elizaveta Sidler, Rita S Dias and Raffaela Cabriolu
Crystallisation of calcium carbonate (CaCO$_3$) in aqueous solutions is essential for carbon dioxide sequestration and the sustainable production of calcium carbonate materials, which are widely used in industry and increasingly explored for novel applications. While crystallisation is often analysed within the framework of classical nucleation theory, CaCO$_3$ and other ionic
crystals often form through amorphous precursor phases, motivating the need for alternative descriptions. In this work, we investigate the relationship between the formation of the first CaCO$_3$ coordination sphere, a fundamental unit of local ordering, and ionic aggregation using two complementary simulation approaches: on-the-fly probability-enhanced sampling (OPES) and asynchronous and infinite-swap replica exchange transition interface sampling ($\infty$RETIS). OPES was used to explore free-energy landscapes, whereas $\infty$RETIS was used to determine reaction kinetics. We studied systems at two levels of supersaturation, between which the formation of the first coordination sphere exhibited distinct kinetic behaviour. These differences were found to be linked to concentration-dependent ionic aggregation. At lower concentration, aggregation remains limited, whereas higher concentration promotes extensive spinodal-like aggregation. For both concentrations, the first coordination sphere forms within the pre-formed clusters through one of two distinct pathways: either within a cluster close to the minimum size required for its formation, or within larger amorphous aggregates whose size and structure depend on concentration. The coexistence of these pathways at both levels of supersaturation reveals the multifaceted nature of early-stage CaCO$_3$ crystallisation and highlights the importance of differentiating ionic aggregation and organisation.
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Chemical Physics
QUPEX: A Streamlit-Based Framework for Visualizing Quantum-Mechanical Property Spaces of Organic Molecules
Mirtha Pillaca Quispe, Alejandra Hinostroza Caldas and Leonardo Medrano Sandonas
The growing availability of
quantum-mechanical (QM)
datasets offers new opportunities to investigate structure-property and property-property relationships in drug-like molecules using data-driven methods. However, interactive tools that integrate molecular visualization, statistical analysis of QM properties, clustering, and machine learning (ML) remain limited, despite their value in facilitating
dataset exploration and interpretation. To address this gap, we introduce QUPEX (
QUantum Property EXplorer), an open-source Streamlit-based framework for the interactive exploration of QM property spaces in molecular systems. As a demonstration, we apply QUPEX to a subset of the QM7-X
dataset comprising 41,537
equilibrium molecular structures containing up to seven non-hydrogen atoms (C, N, O, S, and Cl) and their 24 associated QM properties. In addition to property-space analysis, QUPEX incorporates an XGBoost regression pipeline for predicting PBE0 dipole moments from tight-binding-derived electronic descriptors, together with model evaluation and SHAP-based interpretability functionality. By combining interactive molecular visualization, data analysis, and predictive modeling, QUPEX provides an accessible and extensible environment for investigating molecular
datasets and identifying patterns in their structural and electronic properties. These capabilities can support the exploration of chemical space and inform the rational design of drug-like molecules with targeted QM properties.
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Chemical Physics
Can Machine Learning Potentials Be More Accurate Than the Methods They Are Trained On?
Pavlo O. Dral, Yi-Fan Hou, Yuxinxin Chen et al. (+4 more)
Although machine learning potentials (MLPs) generalize across configurational and chemical compound spaces, their accuracy is commonly believed to be limited by their training methods, with improvements beyond this limit achieved so far only by refitting to experimental observables. In this Perspective, we argue that MLPs can also be made more accurate than their training methods non-empirically by generalizing across a third space, that of
quantum-chemical methods. We propose routes to method-transferable MLPs that predict at unseen methods, with working implementations in both density-functional and wavefunction-based theories showing that they can be more accurate than any of their training methods. Aiming beyond the accuracy of the training methods could also make universal MLPs more accurate than single-method models, even when the method-transferable MLPs remain less accurate than those QM methods. Method-transferable MLPs will shape the construction of training
datasets and the evaluation of models, pushing the accuracy limits of chemical simulations.
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All authors Pavlo O. Dral, Yi-Fan Hou, Yuxinxin Chen, Hassan Nawaz, Mateusz Witkowski, Szymon Śmiga, Ireneusz Grabowski
Chemical Physics
Development of a Minimal Auxiliary Basis for the Particle–Particle Random Phase Approximation (ppRPA): Accelerating Excited-State Calculations in Diradical Nanoparticles and Periodic Systems
Yuchen Wang and Zhenyu Li
Singlet–triplet gaps set the energy scale of the two-
spin manifold in molecular
quantum information materials, and such systems frequently carry diradical character: metal nanoclusters, metal–organic frameworks with radical linkers, and the nitrogen–vacancy center in diamond. Time-dependent density functional theory is the standard tool at this size but describes multireference systems poorly. A closed-shell reference is inadequate for a multiconfigurational ground state, and the adiabatic kernel excludes doubly excited configurations. The particle–particle random phase approximation (\pprpa{}) changes the particle number rather than the
spin. Singlet and triplet states descend from one closed-shell reference, and double excitations enter on the same footing as single ones. Computational cost has confined \pprpa{} to small systems, and the two-electron integrals that drive it are factorized through an auxiliary basis. We develop \pprpa{}–as, which reduces that basis to a minimal set of atom-centered Gaussian shells whose exponents follow from free-atom radii and one global scaling factor. The approximation enters only the excited-state step, so both calculations proceed from the same self-consistent reference. We test molecules and clusters of up to 286 atoms, including heavy elements, and seven point defects in four periodic hosts, obtaining both multiplicities and their splitting without
symmetry breaking or
spin projection. We optimize the scaling factor and give guidance on choosing it. An order-of-magnitude smaller auxiliary basis delivers a speed-up of up to eightfold while staying within $0.03$~eV of conventional \pprpa{}, bringing diradical nanoclusters and periodic systems within reach.
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Chemical Physics
All-electron machine-learned orbital-free density functional for periodic CHNO systems
Marc K. Ickler, Andreas Hermann and Fred A. Hamprecht
We introduce STRUCTURES-P, a machine-learned all-electron orbital-free density functional for periodic CHNO systems. Electrostatics are evaluated analytically in an atom-centered Gaussian basis, while an equivariant network learns the kinetic and exchange-correlation energy from energies and gradients of non-ground-state densities. Minimizing the functional from a superposition of atomic densities recovers the Kohn-Sham ground state: on held-out
crystals, the density error falls from 6.7% to 0.4% of the electron count and the energy error reaches 0.25 mHa per atom, half that of a same-architecture interatomic potential. A single functional can be trained for both isolated molecules and periodic systems, and the model generalizes to larger unit
cells. It largely preserves relative-energy rankings and reproduces convex-hull vertices on the tested H-N composition slice. Together, these results demonstrate the viability of machine-learned all-electron orbital-free DFT for variational density optimization and energy evaluation in fixed-geometry solids.
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Chemical Physics · Cross-listed from cond-mat.mes-hall
WannierSTM: Efficient superconducting scanning-probe spectroscopy from maximally localized Wannier functions
Oscar Moreno Segura, Dorye L. Esteras, Andrei Shumilin et al. (+3 more)
We present a Python-based program that combines maximally localized Wannier functions-based first-principles electronic structure with the nonequilibrium Green's function formalism to enable efficient simulations of scanning tunneling microscopy (STM). The workflow builds upon standard density functional theory packages to construct compact transport
Hamiltonians that preserve the properties of realistic materials. Superconductivity is incorporated via an effective pairing potential within the Nambu-spinor formalism, while coupling to the STM tip and substrate electrodes is treated using the wide-band limit approximation. Within this formulation, transport quantities such as current-voltage characteristics and differential conductance are evaluated in a closed analytical form. This avoids explicit numerical energy integrations and enables rapid spectroscopic calculations over broad parameter spaces. The framework provides a unified and computationally efficient approach for modeling superconducting hybrid nanostructures with
spin-orbit coupling,
magnetic textures, and
spin polarization. Representative applications in
spin chains, two-dimensional and molecular magnets on a
superconductor demonstrate its robust capabilities for both simple model systems and realistic ab initio molecular structures relevant to modern STM experiments.
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All authors Oscar Moreno Segura, Dorye L. Esteras, Andrei Shumilin, Gonzalo Rivero-Carracedo, Riku Tuovinen, José J. Baldoví
Chemical Physics · Cross-listed from cond-mat.mtrl-sci
A Parameter-Free Reference Hamiltonian for Tight-Binding Vanadium Oxides
Jun-qiang Lu
Density-functional tight binding has yet to yield a transferable description of vanadium oxides; for the standard second-order construction and the tested
cells, we demonstrate that two of its approximations deviate by electron volts and offset each other in the band-index centroid separation between the V 3d and O 2p bands: the neutral two-centre reference omits electron-volt environmental terms, whereas the Mulliken charge model assigns the compact V 3d shell less than half of the self-consistent potential shift observed in PBE. Instead, we build a tight-binding model where the reference
Hamiltonian derives from superposed neutral atoms, the full PBE exchange-correlation potential and frozen-core orthogonality, without adjustable terms, and where the orbital-resolved charge response employs three screening factors obtained from PBE linear response and an unscreened Coulomb range. Relative to the primary PAW reference, the plane-wave Harris-Foulkes energy differences of VO2 are matched by the reference energy at fixed geometry and the stated numerical settings, with signed deviations of +2.6 meV/atom for M1 relative to rutile (an energy difference of 92 meV/atom) and +6.2 and -5.2 meV/atom under 3% volume compression and expansion; the charge response reproduces 14 of 22 fitted and 5 of 8 held-out matched PBE responses within one tolerance, and 28 of the 30 within twice the tolerance, and in rutile the fitted first-radial V 3d shift is -4.39 eV, 0.47 eV more negative than PBE's -3.92 eV, whereas the tested DFTB2 charge model gives -1.53 eV. The convexity of the spinless model at fixed geometry prevents it from spontaneously differentiating
symmetry-equivalent sites under the
symmetries respected by its implemented operators and sampling, so within this model such differentiation in the Magnéli phases must arise from electron-
lattice coupling or an explicit
spin or correlation term.
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Chemical Physics · Cross-listed from cond-mat.mtrl-sci
A grand potential for molten-salt electrochemical phase diagrams from first principles
Lorenzo Bastonero, Lucio Colombi Ciacchi and Nicola Marzari
The clean-energy transition is driving unprecedented demand for metals, whose extraction is among the largest industrial sources of carbon emissions. Molten-salt electrolysis offers a path toward carbon-free production of aluminum, iron, titanium, and critical metals. However, corrosive operating conditions and complex, multicomponent feedstocks make experimental development costly and challenging. Here, we introduce a first-principles framework for constructing electrochemical phase diagrams of multicomponent systems to accelerate electrode and electrolyte design and guide the selection of compatible materials and operating conditions for electrochemical
cells. We derive a grand potential that generates these diagrams at scale, and supply free energies using first-principles data obtained through a fine-tuned foundation machine-learned interatomic potential. For silicon in molten CaCl$_2$, the construction not only recovers the experimental diagram when using the first-principles framework on a limited set of structures, but also predicts further domains when extended to a larger set of
crystal structures. Finally, we demonstrate the predictive power of the approach by screening ten alkali and alkaline-earth halide electrolytes for aluminum electrowinning. Three thermodynamic criteria identify NaF, where cryolite emerges as the stable aluminum-bearing phase, recovering the chemistry that Hall and Héroult established empirically in 1886. The framework provides a first-principles basis for selecting compatible electrodes, electrolytes, and operating conditions toward low-carbon metal production from complex source materials.
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Chemical Physics · Cross-listed from physics.flu-dyn
Gas radiation and the gravity limit of flicker in a co-flowing hydrogen jet diffusion flame
Tianfang Xie and Meng Wang
Although weak at normal
gravity, gas radiation sets the
gravity at which a co-flowing hydrogen jet
diffusion flame stops flickering. Flamelet-based simulations with unity Lewis numbers, which reproduce the flicker frequency measured by femtosecond coherent anti-Stokes Raman scattering within 4%, are combined with local stability analysis. At one tenth of normal
gravity, the adiabatic flame flickers, the radiating flame does not, and switching the emission off restores flicker. Radiation acts through two mechanisms that do not weaken at reduced
gravity. The hot outer layer loses buoyancy in proportion to the gas residence time, and a disturbance that displaces the flame also displaces its emission, which damps the disturbance on the lean flank (displaced-emission damping). Freezing the radiative source, which removes only its response to disturbances, slows the downstream recession of the oscillation more than tenfold. Both mechanisms slow the upstream spreading of disturbances. This spreading, competing with the co-flow, sets the onset location and the critical co-flow. Without radiation, the spreading speed scales with the square root of
gravity; its radiative reduction does not. At reduced
gravity, the flicker limit therefore becomes a straight line relating the square root of the co-flow Froude number to a radiation number, the ratio of buoyant to radiative time scales. The calibrated line places the critical
gravity for the experimental co-flow at 0.13 times normal
gravity, 2.6 times the adiabatic value. It correctly predicted whether two further flames keep flickering. Beyond the limit, transient wave packets can mimic flicker throughout a short drop-tower test.
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