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All of arXiv

Tuesday 29 September

Functional Analysis

Failure of Rational Dilation on the Tetrablock via Parrott Homomorphisms

We determine the cotangent operator space structure at the origin of the tetrablock (denoted by $\mathbb E$). In particular we prove that $\operatorname{COT}_0(\overline{\mathbb E}) =\operatorname{MIN}(\ell_1^2\oplus_\infty\mathbb C)$ completely isometrically. This shows the existence of commuting tuple of operators having $\overline{\mathbb E}$ as a spectral set but not as a complete spectral set.
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Networking

Sequence Models for Layer-3 Protocol Emulation

This article investigates whether Layer-3 radio-protocol behavior can be represented by compact sequence models suitable for deployment inside the RAN. We introduce the RRC sequence engine (RSE), a hybrid architecture in which a sequence model predicts protocol-dependent message structure while deterministic components retain control over security-sensitive or configured fields and over transport containers. Using NR protocol traces, we show that protocol-aware tokenization, cross-stack context, and explicit placeholders matter more than general-sequence model scale. A purpose-built 11M-parameter Mamba engine achieves 0.90 exact match on the evaluated next-generation Node B (gNB)-side test set with a median generation latency of 115 ms, sufficient for some timers of Layer-3, outperforming a fine-tuned 0.6B-parameter model. We discuss applications in testing, simulation, deployment specialization, and future trainable 6G control planes, as well as the validation, latency, robustness, and security challenges that remain before operational use.
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Mathematical Physics

Distribution of Scattering Matrix Elements in the case of Symplectic Symmetry

Scattering theory is at the core of gaining information about most quantum systems. In general, analytic progress is difficult and the investigation of universal features using statistical methods is of interest. Commonly this is carried out within the Heidelberg approach which models the Hamiltonian of the target by a random matrix. Hitherto, such investigations were performed for systems that are effectively spinless or have total angular momentum conservation. In light of recent experimental progress it has become relevant to also investigate systems with half-integer spin. Using supersymmetry, we derive the distribution for the real and imaginary parts of the scattering matrix elements and the corresponding cross sections in the case of symplectic symmetry. These results complete the derivations for Dysons threefold way.
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Dynamical Systems

Codimension-one holomorphic Anosov diffeomorphisms

We prove that every codimension-one holomorphic Anosov diffeomorphism of a compact connected complex manifold is biholomorphically conjugate to a hyperbolic automorphism of a complex torus. This verifies a conjecture of Ghys in the codimension-one case and, in particular, in complex dimension three.
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Machine Learning

GARDiff: Graph-Aligned Residual Diffusion for Probabilistic Multivariate Time-Series Forecasting

Diffusion models have recently shown strong potential for probabilistic multivariate time-series forecasting by modeling complex conditional distributions. Recent decoupled diffusion frameworks further separate forecasting into deterministic prediction and stochastic residual generation, making it natural to derive dependency graphs from deterministic representations and use them to guide residual diffusion. However, we show that this direct structural transfer is unreliable. Although deterministic-derived graphs encode useful global dependency priors, they exhibit substantial edge-level misalignment with residual dependency structures, introducing inaccurate or redundant conditions during residual generation. This reveals a previously overlooked deterministic-to-residual structural alignment problem in decoupled diffusion forecasting. To address this problem, we propose GARDiff, a Graph-Aligned Residual Diffusion framework for probabilistic multivariate time-series forecasting. Instead of treating deterministic-derived graphs as fixed diffusion conditions, GARDiff progressively adapts them to residual generation. Specifically, GARDiff estimates residual uncertainty to distinguish high- and low-uncertainty regions, enabling uncertainty-aware structural refinement, and further performs timestep-aware edge sparsification during reverse diffusion to evolve graph conditions from broad dependency aggregation to localized residual refinement. Extensive experiments on six real-world benchmarks demonstrate that GARDiff consistently improves probabilistic forecasting performance and uncertainty calibration over strong baselines.
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All authors Rui Han, Min Yang, Xu Zhang, Xinghao Yang, Wei Liu, Yongshun Gong

Distributed Computing

FP64 Is All You Want, INT8 Is All You Need, FP4/6/8 Is All You Have

Ozaki scheme II emulates FP64 matrix products with INT8 ones through residues modulo pairwise coprime moduli, and variants for FP8 and FP4 have followed. We treat these schemes as one family and pose the choice of a scheme as a combinatorial program that minimizes the number of low-precision GEMMs. Given, for each modulus, a finite set of ways to compute products modulo it from low-precision GEMMs, we find the choice of moduli and ways with the fewest GEMMs, for any format, accumulator and inner dimension, and derive lower bounds on the GEMM count over the whole family. Applied to the formats of current GPUs, the method gives the first FP6 schemes, an FP8 scheme with fewer GEMMs than any previous one, and an FP4 scheme that the bounds show needs the fewest GEMMs of any scheme in the family whose moduli lie in a stated range. Implemented on three Blackwell GPUs, the INT8, FP8 and FP4 schemes run faster than native FP64, up to 83x on B300.
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General Relativity and Quantum Cosmology

On more general Gibbons-Hawking-York boundary terms for f(R) gravity

More general boundary conditions are introduced - with respect to known literature - which produce a well-posed stationary action principle in $f(R)$ gravity. These conditions encompass the known cases, thus enlarging the space of admissible solutions. The corresponding Gibbons-Hawking-York boundary terms are explicitly computed and hold for any analytic f(R). The perspectives of application concerning the scalar-tensor mapping and the laws of black-hole thermodynamics are outlined in the conclusions.
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All authors Federico Scali, Sergio Luigi Cacciatori, Matteo Galaverni, Gabriele Gionti

Audio and Speech Processing

Signal-Independent and Signal-Dependent Neural Ambisonic Matrix Encoding for Arbitrary Arrays with Variable Microphone Counts

Recent neural Ambisonic encoders accommodate diverse array geometries, yet many existing neural encoders require a fixed microphone count because the number of microphone channels is embedded in the network architecture. This requirement limits deployment across devices with different microphone configurations and adaptation to changes in available channels. To address this limitation, we investigate Transformer-based matrix encoding for arbitrary microphone arrays with variable microphone counts. This is achieved through shared microphone-wise processing and masked self-attention that models inter-microphone relationships across variable-size arrays. Within this framework, we consider signal-independent (SI) encoding, which predicts encoding matrices from array transfer functions, and introduce a signal-dependent (SD) extension that additionally incorporates the observed microphone signals. Both models are trained on simulated scenes using LibriSpeech sources and extensively evaluated under changes in source type, unseen microphone counts, and increased source counts beyond those used during training. Both SI and SD outperform conventional least-squares (LS) encoding in aggregate reconstruction performance across the evaluated conditions. SD consistently achieves stronger overall performance than SI. These results demonstrate that the proposed framework enables array-agnostic Ambisonic encoding while retaining generalization across microphone counts and acoustic source conditions.
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All authors Shichao Hu, Zhiheng Jin, Chunyang Xu, Mengyao Zhu

Computer Vision

Honeycomb: Constant-Size Scene Memory Representation for Video World Models

Video world models require persistent scene memory to maintain consistency during long-horizon video generation. Existing spatial memories accumulate RGB observations or latent features, increasing storage requirements as generation proceeds. We introduce Honeycomb, a video world model built on HexMemory, our proposed low-rank representation for storing scene features in a fixed-size memory with a total of six spatial and spatiotemporal planes. A feed-forward writer maps each generated chunk into new plane features. As the spatial coverage or temporal range expands, we warp the previous planes while preserving their dimensions, then fuse them with the new features through confidence-weighted pooling and a learned residual correction. A reader retrieves latents from HexMemory to condition subsequent video generation. The writer processes only observations from the new chunk, avoiding per-scene optimization and repeated processing of the full history. Experiments on WorldScore and RealEstate10K demonstrate strong video generation quality and robust revisit consistency while keeping HexMemory feature storage constant throughout generation. Code and additional visualizations are available on our project page at https://jackswl.github.io/honeycomb/.
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All authors Jack Wei Lun Shi, Kaichen Zhou, Haoyu Chen, Yufeng Weng, Keane Ong, Ruojin Cai, Hang Hua, Justin K. W. Yeoh, Mengyu Wang

Materials Science

Switching Anomalous Hall and Nernst Responses by Nonmagnetic N Occupation at Fixed Noncoplanar Mn Antiferromagnetic Order

Nonmagnetic atomic occupation can control anomalous transverse transport by modifying magnetic symmetry without changing the underlying magnetic order. We demonstrate this effect using controlled $\gamma$-Mn, Mn$_4$N, and MnN reference states with the same lattice constant and identical noncoplanar all-in-all-out Mn magnetic configurations, while varying only the occupation of the N sublattice. The anomalous Hall and anomalous Nernst responses exhibit a pronounced zero–finite–zero evolution across the series despite the unchanged Mn spin order. In $\gamma$-Mn and MnN, the high magnetic symmetry enforces complete cancellation of the Brillouin-zone-integrated Berry curvature. In Mn$_4$N, N occupation lowers the magnetic symmetry while preserving inversion and breaking the relevant twofold rotational symmetries, thereby lifting the cancellation constraint and permitting an uncompensated Berry-curvature contribution along the [111] direction. The resulting finite anomalous Hall conductivity reaches $-126$~S/cm near the Fermi level. These results establish nonmagnetic sublattice occupation as a symmetry-control parameter for Berry-curvature-driven transport in compensated antiferromagnets, independent of changes in the magnetic order.
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All authors Xin Liu, Jiyuan Xu, Li Ma, Guoke Li, Dewei Zhao, Congmian Zhen, Denglu Hou

Computation and Language

Reader Proficiency Shapes Layer-wise Surprisal Profiles

Reading behaviour varies not only with linguistic input, but also with reader proficiency. In this study, we investigate whether the layer-wise relationship between surprisal from large language models (LLMs) and human gaze behaviour differs across readers with different levels of proficiency and across gaze measures. Using eye-tracking data from the MECO L2 corpus, we compare readers with high and low vocabulary proficiency on first-pass gaze duration (FPGD) and total gaze duration (TGD). We quantify the distribution of the predictive power of surprisal across model layers using Predictive Depth. Across 12 tested LLMs, we find that readers with lower vocabulary proficiency tend to show deeper Predictive Depth for FPGD, while this difference is smaller for TGD. Also, TGD itself shows deeper Predictive Depth than FPGD in both proficiency groups. These patterns suggest that where predictive power is concentrated across LLM layers may be related to the timing and breadth of the reading processes captured by different gaze measures, and that this relationship can vary with reader proficiency. Our leave-one-out analysis further shows that the advantage of informative internal layers extends to unseen texts, although the practical improvements in prediction are limited. Overall, our results show that layer-wise LLM surprisal provides a useful perspective on variation in reading behaviour across both reader groups and gaze measures.
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Artificial Intelligence

WISE-ATTA: When to Ask for Labels in Budgeted Active Test-Time Adaptation

Active test-time adaptation (ATTA) improves robustness under distribution shift by updating a deployed model during inference while selectively querying supervision. However, most existing ATTA methods implicitly assume that supervision can be requested for every incoming test batch, which can incur substantial annotation cost over long test streams. In this work, we introduce budgeted ATTA in which labels are available for only a fraction of test batches. This formulation shifts the central challenge from deciding what to label within a batch to deciding when supervision should be applied over time. To address this challenge, we propose a budget-aware approach WISE-ATTA that allocates supervision over the test stream based on lightweight signals computed online, prioritizing periods where supervision is likely to be most useful. When a batch is selected for supervision, we further employ a drift-based sample selection criterion that targets samples exhibiting ongoing, unconverged adaptation dynamics, enabling effective updates from a single labeled example. We evaluate this approach on synthetic corruptions (ImageNet-C) and natural distribution shifts (ImageNet-R/K/A). Across settings, WISE-ATTA achieves competitive or improved performance compared to recent ATTA methods while requiring substantially fewer labels. Overall, we find that the timing of supervision is a key, yet underexplored, aspect of active test-time adaptation. Code: https://github.com/Muhammad-Huzaifaa/WISE-ATTA
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Artificial Intelligence

EngiWorld: What Can Frontier Agents Deliver in Professional Engineering Environments?

Autonomous agents have made rapid progress in general-purpose computer use, yet reliable automation of professional industrial engineering remains out of reach. Engineering workflows require reasoning over geometric and physical constraints and keeping dependencies consistent across software and design stages. We present EngiWorld, a benchmark designed around the capabilities that real engineering projects require, from operating a single application to solving engineering problems end to end. It contains 1,301 expert-curated tasks spanning six engineering domains (CAD, CAE, CAM, BIM, EDA, and DCC) and 26 professional software applications, with both GUI and CLI interfaces. The tasks are organized into six types, corresponding to capabilities that real engineering projects require. We further introduce an artifact-centric evaluation methodology built on a unified suite of domain verifiers. The verifiers programmatically check whether final and intermediate artifacts are geometrically valid, physically feasible, and compliant with design rules. Beyond binary success, they also score how well optimized designs meet their specifications. Evaluation of seven frontier models reveals a substantial capability gap: the strongest model scores only 44.7/100, and just 3.6% of runs on tasks that require cross-software coordination succeed. EngiWorld provides a rigorous foundation for measuring progress toward agents that operate professional engineering software end to end.
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All authors Hongcheng Gao, Hailong Qu, Yu Lei, Henghui Sun, Haoyang Li, Yipeng Wei, Naihao Xue, Xiaohan Yu, Zhuo Tao, Yihe Zang, Yajiao Wang, Jingyi Tang, Yi Li, Jingjing Zhou, Jie Luo, Bohan Zeng, Chengyu Shen, Hao Jiang, Chong Chen, Bowen Qu, Olive Huang, Zeqiang Wang

Computer Vision

PAIQ: Patch-Aligned Semantic Injection via Residual Rotation

Language-aligned and self-supervised visual encoders offer complementary strengths in semantic abstraction and spatial detail. Harnessing this complementarity requires enriching local features while retaining distinctions between semantically related patches. We introduce PAIQ, a patch-aligned semantic injection framework that combines content-based cross-encoder matching with orthogonally constrained residual updates. Using DINOv3 patch features as the spatial base, PAIQ aggregates complementary SigLIP features through joint source allocation and injects the aggregate–base differences through a shared orthogonal transformation Q. This rotation adapts update directions while preserving residual norms and pairwise angles. For fixed projected features, we derive conditions for patch separability under similar semantic aggregates and show that rotation adds a nonnegative separation term over direct interpolation when the aggregate is shared. Only the projection and fusion parameters are trained; both visual encoders and the language model remain frozen, and fusion retains 196 visual tokens. Across diverse language backbones, PAIQ yields broad gains in judge-assessed correctness and reductions in hallucination severity over single-encoder interfaces on image description and visual question answering. On the 2B and 9B Qwen backbones, this compact interface outperforms the strongest evaluated fusion or token-compression baselines by about 2.9 correctness points on average.
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All authors Pinze Ren, Yuwei Zhang, Hao Chen, Linghao Meng, Chang Li, Qiankun Li

Artificial Intelligence

Learning from Shared-Control Overrides: Context-Driven Acceleration Profile Prediction for Personalized Overtaking

Adaptive Cruise Control (ACC) systems are typically calibrated for an average driver, often resulting in a mismatch between vehicle behavior and individual expectations during time-critical maneuvers such as highway overtaking. When the ACC is perceived as too conservative and inconsistent, drivers intervene through throttle overrides, providing implicit feedback on the system's behavior. This paper reframes these override actions as human-in-theloop supervisory signals and proposes a data-driven framework for personalized vehicle adaptation, termed Context-driven Personalized ACC (CoP-ACC). Rather than relying solely on end-to-end regression, which tends to over-smooth dynamic responses, we introduce a hybrid pipeline combining: (i) unsupervised hierarchical clustering to extract representative acceleration profiles from override events; (ii) a context classifier that maps pre-maneuver driving conditions to the appropriate profile; and (iii) a residual regressor that refines the selected profile into a smooth, personalized acceleration profile tailored to the immediate context. Evaluated on real-world public-road data against a withheld forced-ACC baseline, the approach demonstrates high reconstruction fidelity and generates acceleration profiles that tend toward the driver's expected behavior in potential override contexts. The results highlight the potential of learning from shared-control overrides to enable anticipatory, personalized ACC behavior, reducing manual interventions and improving ride comfort.
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All authors Ruizheng Xu, Lounis Adouane, Javier Ibañez-Guzmán, Clément Zinoune

Systems and Control

Active Informativity: Online Input Design for Data-Driven Control

We develop a unified framework for online input design in data-driven control from noisy data. We introduce a performance measure and analyze how such quality measure changes as new data are added. Based on such analysis we propose an online method for selecting inputs that ensures that data quality does not decrease over time. We demonstrate the validity of our approach by formulating six common noisy data-driven control problems in our framework, and by solving numerical examples for three of them.
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All authors Yishu Wang, Paolo Rapisarda, Jianquan Lu, Yang Liu

Computer Vision

Med-RADIO: Reducing All Medical Domains Into One via Multi-Teacher Distillation

The rapid expansion of large-scale medical datasets and computational resources has driven significant progress in medical foundation models. Given the inherent heterogeneity of medical imaging modalities, current research mainly follows two paths: specialized models optimized for specific modalities, and generalist models designed to handle multiple modalities. However, medical generalist models suffer from both insufficient training data scale relative to natural image generalists and inadequate domain-specific depth relative to medical specialists. Empirically, generalist models establish a cross-modality performance baseline, while specialists define the performance ceiling within their respective domains. To elevate this baseline toward these ceilings, we propose Med-RADIO, a medical multi-teacher distillation framework that Reduces All Domains Into One by compressing complementary expertise from multiple domain-specific teachers into a unified medical vision foundation model. Our method curates both generalist and specialist teachers, allocates modality-aligned distillation streams to reorganize generalist pretraining data so it matches specialist domains, and uses a balanced loss to prevent any single teacher from dominating the distillation process. On internal and external classification benchmarks spanning five modalities, Med-RADIO improves over strong medical generalists under linear probing and remains competitive with representative specialists on most evaluated modalities. Code is available at https://github.com/CAIR-HKISI/Med-RADIO.
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All authors Chu Zhang, Haoyu Jiang, Hongyuan Zhang, Hongbin Liu, Dong Yi

Robotics

ProAct-VLM: Pre-Failure Vision-Language Task Replanning with Continuous Perception Feedback

Long-horizon robotic tasks are vulnerable to unexpected environmental changes that can render planned actions ineffective or unsafe. To address this, robots must detect such changes as they occur, interpret their impact, and adjust their actions accordingly. Traditional rule-based decision-making pipelines are brittle in open-world conditions, as they are hand-tuned for specific scenarios and lack generalization. Vision-Language Models (VLMs) offer a promising alternative as they combine broad world knowledge with unified visual–text reasoning, enabling them to generalize across diverse scenarios and generate accurate, grounded task plans. However, for effective deployment in dynamic real-world settings, VLMs must be embedded into frameworks capable of handling uncertainty and environmental changes. Existing frameworks broadly address this reactively, triggering replanning only after execution failures or post-task checks, risking failed actions. Some methods verify conditions before actions, but these discrete checks miss changes occurring during execution. To address this, we present ProAct-VLM, an adaptive, physically grounded task planning framework that integrates VLMs within a real-time perception–feedback loop. ProAct-VLM continuously monitors the environment and re-plans as soon as relevant changes are detected, enabling adaptation before failure occurs. Evaluations against multiple baselines and across different VLM backbones show that our framework improves both success rates and efficiency in dynamic, long-horizon manipulation tasks. Project page: https://github.com/moured/ProAct-VLM
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All authors Ahmed Nader Ahmed, Omar Moured, Mughni Irfan Mohammed Abdul, Muhayy Ud Din, Irfan Hussain

Machine Learning

When Models Don't Manipulate Manifolds: The Geometry of a Comparison Task

One of the current premises of mechanistic interpretability research is that detailed accounts of the geometry of neural network representations can tell us how models perform computations, and how to effectively intervene on them. While low dimensional manifolds have been observed for multiple concepts in the literature (e.g. numbers encoded on helices, days of the week on a circle, ...), with structure believed to reflect properties of data and tasks, the extent to which models rely on them for computation, and how they manipulate them, remains unclear. We characterize precisely the geometry of computation in a number-comparison task, as an abstraction of comparison for decision making, and how models utilize geometry in an elegant fashion to implement it. Specifically, we study the causal geometry of number comparison in Qwen2.5-7B-Instruct, a capable and widely studied open-weight model, and find Qwen largely uses linear representations of numbers despite the presence of curved geometry. To compare two numbers, the model first encodes each number along a vector and adds the two representations using attention and the residual connection, bringing them into a shared space in the residual stream. Then, the model uses MLP neurons to compare the pair of numbers on local regions in this shared space, which correspond to smaller intervals of input numbers, and combines these to obtain the position of the maximum. In fact, this reliance on linear representations for comparison also persists when the model compares three numbers. Our findings demonstrate that the manifold hypothesis can co-exist with linear representations: while concepts that are ordered may have manifold structure in representations, the model may use an underlying linear structure of the concept in certain computations.
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All authors Sai Sumedh R. Hindupur, Hadas Orgad, Thomas Fel, Demba Ba

K-Theory and Homology

Roe algebras and coarse index maps for spaces with proper actions of étale groupoids. I

This is the first in a series of papers extending Roe algebras and coarse index theory to the groupoid-equivariant setting. We introduce some techniques to develop a framework of Roe algebras and their K-theory for spaces equipped with proper actions of étale groupoids. For a fixed étale groupoid G and G-C* -algebra A, we construct a functor KC(-; G, A) from the category of locally compact Hausdorff proper G-spaces and equivariant proper continuous maps to the category of graded abelian groups, which provides a natural receptacle for an equivariant coarse index map. We study the existence of universal modules, an analog of ample modules in non-equivariant setting, and develop a decomposition technique to establish their existence. As an application, we prove that groupoid simplicial complexes satisfying suitable hypotheses admit universal modules.
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Group Theory

Local conjugacy in prosolvable groups

For prosolvable groups, we provide conditions under which two locally conjugate supplements of a normal pronilpotent subgroup are conjugate, analogous to those given by Losey and Stonehewer for finite groups. Our proof relies on a primary-type decomposition of the first cohomology set which may be of independent interest. We also give local conditions for subgroup inclusion and a fixed-point result in the style of Glauberman.
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Robotics

Learning Expressive and Compositional Motion Representation via Spectral Skills

Robotic foundation models offer a promising path toward general-purpose humanoid robot control, often through hierarchical architectures. However, their effectiveness depends on the command interface between the planner and the controller, which must support accurate execution while remaining easy to predict, and ideally allow new behaviors to be composed from prior ones. In this work, we introduce spectral skills, a latent representation of this interface that meets these requirements through predictive representation learning. By design, spectral skills compactly encode short motion segments and are learned by predicting subsequent motion rather than reconstructing the encoder input. On a 29-DoF humanoid, a controller conditioned on spectral skills reduces global tracking error by 62% relative to the state of the art. The same frozen controller chains independently encoded skills without a separate transition policy. It also composes new behaviors by adding orthogonal directions to any compatible base skill, producing combinations unseen in the training data. We demonstrate tracking, chaining, and composition, as well as control through a language-conditioned planner, on Unitree G1 hardware. Project page: https://spectral-skill.github.io
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All authors Feiyang Wu, Chenxiao Gao, Chen Yang, Ye Zhao, Bo Dai, Anqi Wu

Cryptography and Security

She Spoofed Sea Ships by the Sea Shore: Measuring Large-Scale GPS Spoofing in Global Maritime Traffic

GPS spoofing has emerged as a serious threat to maritime security, yet its global prevalence, persistence, and structure remain largely unmeasured. In this paper, we present the first large-scale measurement study of maritime GPS spoofing, using global Automatic Identification System (AIS) data, which contain the GPS coordinates broadcasted over time by ships across the world. We focus on large-scale regional spoofing, where external interference displaces many vessels across an area at once, leaving a recognizable signature of physically implausible motion correlated across ships; our motion-aware, marine-specific framework identifies this signature and grades the evidence for GPS spoofing in each region it finds. Applying our approach to AIS data from over 367,000 vessels collected between late November 2024 and early February 2025, we identify 31 persistent anomalous hotspots across high-traffic maritime regions, at least 22 of which show strong evidence of GPS spoofing, with spatial and temporal structure aligning with regional conflict and economic sanctions. Notably, our method found that the spoofing activity in the Red Sea responsible for the highly-publicized grounding of the 75,000-ton container ship, MSC Antonia, was ongoing months before the incident, which has not been previously documented. Similarly, we detected persistent spoofing in the Strait of Hormuz over a year before the 2026 Iran war brought commercial shipping through the Strait to near-standstill. Together, this work establishes GPS spoofing as a widespread, recurring, and measurable threat to global maritime navigation.
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All authors Anna Raymaker, Ryan Von Brock, Ryan Pickren, Animesh Chhotaray, Frank Li, Saman Zonouz, Raheem Beyah

Machine Learning

LEMON-ZEST: Evolution-Informed Tokenization for Efficient Protein Language Modeling

Protein Language Models (PLMs) have made remarkable progress following scaling laws established in natural language processing across sequence- and structure-based tasks, yet the potential of tokenization remains underexploited. Unlike human language, proteins preserve structure despite extensive sequence variation, a property standard tokenization strategies fundamentally fail to capture. We introduce ZEST (Zoned Encoding of Sequence Traits), an evolution-informed vocabulary derived from conserved regions of multiple sequence alignments. ZEST allows embedding domain-level biological priors directly at the tokenization stage rather than learning them implicitly through scale. ZEST natively compresses sequences to an average token length of 3.3 residues, enabling our model to process $\geq3380$ residues within a standard 1024-token context window. Building on this, we present LEMON (Layered Extraction of Molecular Ordering from Nature), a compact 200M-parameter sequence-based model for detection of remote homology between protein sequences trained on a single H100 GPU for one week. Despite its modest size, LEMON outperforms models of 600M to 3B parameters and is on-par with TM-Vec. Our results demonstrate that evolution-informed tokenization can substitute for massive parameter scaling, opening a new direction for efficient, biologically-grounded protein representation learning. All code and model weights are publicly available (at \href{https://github.com/LDWLab/ZEST}{github.com/LDWLab/ZEST}) under the MIT license.
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High Energy Physics (Theory)

Reconciling Inflation with the Festina Lente Bound through Affleck-Dine Baryogenesis

The Festina-Lente bound is a swampland conjecture motivated by the behavior of charged BHs in dS spacetime, which imposes a constraint on the masses of charged particles. Although relatively weak in the present-day Universe, it can severely constrain inflation. We clarify its underlying assumptions and show that breaking all gauge symmetries during inflation, with gauge boson masses above the Hubble scale, provides a natural way to evade these constraints. We catalogue single flat directions in the Minimal Supersymmetric Standard Model that completely break its continuous gauge group, together with pairs that achieve complete breaking only when both directions are excited and simultaneously satisfy F- and D-flatness. With suitable lifting operators, such condensates can also generate the baryon asymmetry through the Affleck-Dine mechanism. Within this classification, all single-direction monomials that admit complete breaking carry nonzero $B-L$, providing candidates for Affleck-Dine baryogenesis. We further show that, in this setting, a large condensate compatible with the observed baryon asymmetry and isocurvature constraints readily satisfies the Festina-Lente bound, establishing a natural connection between the FL bound and Affleck-Dine baryogenesis.
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Artificial Intelligence

KUPAS MASTER: Distilling the Tacit Expertise of Master Practitioners into Agent-Ready Experience Corpora

Experienced professionals know more than just facts and conclusions. They know which cues matter, why a judgment is reasonable, and which action to take. Routine work records often leave out this tacit knowledge, making it difficult for Large Language Model (LLM) agents to use professional experience effectively. We introduce KUPAS MASTER, an experience engineering platform built around nine-layer cognitive corpus construction. It turns heterogeneous work records and practitioner interviews into traceable, reusable experience corpora for agents. Six case elements preserve the task process: context, cues, judgment, action, boundaries, and outcomes. Nine-layer cognitive corpus construction organizes tacit experience along nine extraction dimensions and stores the resulting assets in six libraries: rules, constraints, best practices, negative examples, corner cases, and skills. Semantic alignment, individual experience distillation, organizational consolidation, and cross-review preserve source evidence, conditions of use, and unresolved disagreements. The platform packages these assets into callable skills with explicit inputs, steps, dependencies, and stopping conditions, connecting experience collection to task execution and evaluation feedback. Using authorized samples from 20 randomly selected practitioners, the platform processed 1,576 source files into 23,024 individual experience records and 13,113 organizational assets. The evaluation spans multiple professional domains. Under common task inputs and scoring criteria, the base model, raw corpus retrieval-augmented generation (RAG), and KUPAS MASTER agent scored 70.63, 79.75, and 89.58, respectively. The KUPAS MASTER agent improved on raw-corpus RAG in all seven scoring dimensions. The platform provides a practical path from individual tacit experience to organizational knowledge and agent capabilities.
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All authors Changmian Wang, Yuchao Ma, Xuchao Lu, Chen Zhang, Ping Sun, Jiazheng Wang, Shan Wang, Xuanwen Chen, Yihe Sun, Ziyu Lu, Jianqiang Huang, Hongzhi Li, Ziqing Xia, Kaihua Tang, Xian-Sheng Hua, Qinghua Zheng

Networking

NetLexicon: Learning Discrete Behavioral Representations for Encrypted Web Traffic Analysis

Encrypted Web traffic analysis requires effective representations of observable communication behavior. Existing pretraining methods often adapt NLP/CV objectives and sequence architectures, motivating learning objectives that capture traffic-specific interaction patterns. We present NetLexicon, a discrete pretraining framework that learns reusable behavioral states from unlabeled traffic. It converts contextual traffic windows into discrete states through vector quantization, constructing a compact traffic lexicon. We design two complementary pretraining objectives. State Transition Prediction (STP) forecasts subsequent sequence structure and packet features from observed history, while Statistical Feature Alignment (SFA) grounds learned states in window-level traffic statistics. Together, they guide the lexicon to capture recurring communication behaviors and their evolution. We evaluate NetLexicon on four benchmarks covering Web application identification, service type identification, and malware detection. NetLexicon improves Macro-F1 by up to 25.5 percentage points over the strongest baseline on each benchmark and reduces fine-tuning time per epoch by up to 23.6 times relative to the evaluated baselines. Further analysis shows that the learned discrete states capture recognizable patterns in packet size, timing, and data transfer. These results demonstrate that incorporating observable behavioral structure into pretraining supports effective, efficient, and interpretable representations for encrypted traffic analysis.
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All authors Xiangyu Gao, Tong Li, Ziqiang Wang, Yinchao Zhang, Rongbang Wu, Zhenxing Zhang, Jing Hu, Hanlin Huang, Xinle Du, Su Yao, Qi Li, Ke Xu

Quantum Physics

Integrated balanced homodyne detector using CMOS capacitive-feedback TIA for quantum measurements

A low-noise, high-speed balanced homodyne detector is demonstrated, combining a capacitive-feedback transimpedance amplifier implemented in 28 nm CMOS with a custom photonic integrated circuit fabricated in imec's iSiPP200 silicon photonics platform. The receiver achieves a 3-dB bandwidth of 7.6 GHz, a maximum shot noise clearance of 27 dB, a shot noise-limited bandwidth of 13.7 GHz and a common-mode rejection ratio up to 54.8 dB. These results demonstrate the suitability of CMOS capacitive-feedback transimpedance amplifiers for demanding quantum and coherent sensing optical applications, including continuous-variable quantum key distribution, quantum random number generation, and optical coherence tomography.
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All authors Sarah Bastiaens, Cedric Bruynsteen, Simone Cammarata, Axl Bomhals, Leandro da Silva, Michiel Van Osta, Johan Bauwelinck, Xin Yin

Artificial Intelligence

MeanFlowAdvantage: Stable Reward Fine-Tuning for Few-Step Average-Velocity Generators

MeanFlow enables efficient few-step generation by predicting interval-average velocities, but this representation creates a mismatch for reward fine-tuning: existing advantage-based objectives are typically defined on instantaneous velocities or equivalent $x_0$-space predictions, whereas inference directly uses the learned average-velocity map. We introduce MeanFlowAdvantage, a signed advantage-weighted least-squares objective for average-velocity generators. Our key construction uses a shared, detached MeanFlow derivative correction to express the reward objective in prediction space while making rollout and reference regularization exact penalties on the average-velocity network deployed at inference. The resulting formulation preserves MeanFlow's native few-step sampler and provides a direct mechanism for transferring reward improvements to the deployed flow map. On SD3.5-Medium, MeanFlowAdvantage improves all eight reported metrics over the matched four-step MeanFlowNFT baseline and, with only four NFEs, matches or exceeds the 40-step DiffusionNFT baseline on six of eight metrics. The same objective also transfers to DNA promoter design, where it supports both teacher-free on-policy RL for a generator defined on a manifold and teacher-guided reward-graded distillation, with the latter yielding the lowest one-step Sei profile MSE among the compared configurations.
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Software Engineering

Retrieve, Reproduce, Reveal: Dissecting Retrieval-Augmented Software Vulnerability Detection

Retrieval-Augmented Generation (RAG) is increasingly used to enhance Large Language Model (LLM)-based software vulnerability detection by grounding predictions in retrieved vulnerability knowledge, such as vulnerability reports. However, existing RAG-based software vulnerability detection (RAG4SVD) systems are often evaluated using proprietary models, which challenges open science and reproducibility. Further, studies use different datasets, custom knowledge bases, different backbone models, and diverse metrics, which hinders meaningful cross-system comparison. In this work, we study six open-source RAG4SVD systems and address these reproducibility and comparability challenges through (i) reproduction of their experimental settings under an open-weight setting, and (ii) a unified benchmark using a common dataset, metric suite, and pool of open-weight models. Further, RAG4SVD systems typically consist of multiple components, yet are often evaluated only as a whole system, i.e., end-to-end. Therefore, we perform (iii) a component-level analysis that decomposes representative RAG4SVD pipelines into input abstraction, knowledge retrieval, and detection. Our results demonstrate that reproducibility varies substantially across systems. Under the presented unified benchmark, published RAG4SVD performance does not transfer under a controlled open-weight evaluation and depends strongly on the used model. The component analysis shows that effective RAG4SVD depends on the alignment between pipeline stages. For example, oracle knowledge raises retrieval to near-optimal, yet performance remains low (0.51 pairwise accuracy), demonstrating that retrieval effectiveness alone is insufficient for reliable detection. These findings motivate evaluating RAG4SVD not only end-to-end, but at the level of pipeline components, and provide a basis for more standardized, RAG-aware evaluation practices.
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All authors Sabrina Kaniewski, Tim Krämer, Julius Bächle, Markus Enzweiler, Michael Menth, Tobias Heer