Machine Learning (Statistics)
Disentangling Forced and Internal Climate Variability in Single Realizations using Dynamic Mode Decomposition with Control
Nathan Mankovich, Andrei Gavrilov and Gustau Camps-Valls
We show that a single
climate realization can be decomposed into forced and internal components by treating external forcing as a dynamical driver within a linear
stochastic system, an idea grounded in pullback attractor theory. In doing so, we address a central methodological challenge in
climate science with direct implications for
climate projection and the detection and attribution of the forced response, disentangling the forced
climate response from internal variability in a single observed record. Statistical methods range from approaches trained on large ensembles to techniques operating on single realizations. The latter often rely on linear frameworks such as linear inverse models (LIMs) and linear regression. LIMs ignore forcing predictors, whereas linear regression omits
climate system dynamics. Here we introduce PullbackDMDc, a method grounded in non-autonomous dynamical systems theory and dynamic mode decomposition with control (DMDc), incorporating pullback attractor estimation to decompose a single
climate realization into spatial modes and their associated forced and internal components, yielding a physically interpretable picture of the underlying dynamics. We illustrate the utility of PullbackDMDc for Earth System Model (ESM) evaluation by applying it to near-surface air temperature and sea-level pressure from reanalysis and four ESM large ensembles. PullbackDMDc estimates the forced response with skill matching or exceeding established baselines and identifies optimal forcing predictors against model-based ground truth. Its internal variability components reveal that ESMs qualitatively capture interannual and decadal modes while exhibiting systematic differences relative to each other and to observations. Skillful forced response estimation and a novel decomposition position PullbackDMDc as a practical tool for single-realization
climate analysis and ESM evaluation.
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Statistics Theory
The Benjamini–Hochberg Procedure Can Fail to Control the FDR for Correlated Two-Sided Gaussian Tests
Edgar Dobriban
We show that the Benjamini–Hochberg procedure can fail to control the false discovery rate (FDR) at its nominal level for correlated two-sided Gaussian $p$-values. We construct a factor model for which, at level $\alpha=0.01$, a rigorous interval-arithmetic certificate proves $FDR>0.0104$ for all sufficiently large numbers of hypotheses. This disproves a
conjecture widely believed to be true for twenty years. Monte Carlo experiments are consistent with the theoretical result. The proof was obtained by GPT-5.6 Pro and carefully checked by the author.
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Statistical Methodology
Fitting Generalized Linear Mixed-Effects Models using lme4
Anna Ly, Rune Haubo Bojesen Christensen, Douglas Bates et al. (+2 more)
The lme4 R package can be used to fit generalized linear mixed models (GLMMs), which extend the class of linear mixed models (LMMs). The two main extensions provided by GLMMs are (1) allowing for the conditional distribution of the response given the random effects to be non-Gaussian (e.g. binomial, Poisson) and (2) allowing the conditional mean to be a nonlinear function of a linear combination of the fixed and random effect coefficients, via an inverse link function. The conditional mode of the random effects given the observed data, the variance-covariance
matrix of the random effects, and the fixed effect parameters are determined using penalized iteratively reweighted least squares. We compute an approximation of the integral over the distributions of the conditional modes to compute the maximum likelihood estimate for a given set of parameters (by default we use the Laplace approximation or, alternatively, the more computationally expensive adaptive Gauss-Hermite quadrature). The package provides all the standard features available for GLMs in base R, including the standard set of accessor functions as well as the possibility of user-specified distributions (within the exponential dispersion family) and link functions.
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All authors Anna Ly, Rune Haubo Bojesen Christensen, Douglas Bates, Martin Maechler, Benjamin M. Bolker
Machine Learning (Statistics)
Falsifying Causal Graphs With Outlier Events
William Roy Orchard, Philipp M. Faller and Dominik Janzing
True causal relationships are rarely known, and inferring causal graphs from data is hard. A fundamental challenge is how to assess whether a given causal graph is good in the absence of a ground truth. We propose falsifying candidate causal graphs based on whether they can explain the propagation of an outlier event. Our approach leverages a key principle: weak outliers rarely cause strong ones. While this principle has previously been used in root cause analysis to identify root causes without prior knowledge of the graph, we turn it on its head and use it to falsify candidate causal graphs whose implied outlier propagation is inconsistent with the data. To this end, we present the first statistical tests for the hypothesis that a candidate graph is the true causal graph, and show they have false positive control, power guarantees against incorrect causal graphs, and can operate with a single outlier sample.
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Statistics Theory
Causal Graphs, Markov Properties and Do-calculus for Stochastic Differential Equations
Philip Boeken and Joris M. Mooij
Stochastic differential equations (SDEs) are widely used to model continuous-time dynamical systems, but graphical causal models for them are not yet well-understood. We consider systems of causal SDEs that are equipped with an explicit causal semantics. We pose solvability conditions for systems of causal SDEs such that they have well-defined observational and interventional distributions - even after marginalisation - and provide a general class of Lipschitz semimartingale SDEs that satisfies these conditions. As core results we establish the $\sigma$-separation Markov property and the do-calculus in terms of the system's causal graph for probabilistic independence and interventions on the level of sample paths. For a class of additive-noise SDEs we prove a stronger $d$-separation Markov property, even if the system is cyclic. As a corollary of the do-calculus, we obtain an explicit causal interpretation of the graph: that the absence of a directed path implies the absence of a causal effect. We further introduce time-split systems, which consider the causal relations between the processes when evaluated on disjoint intervals or time-points, and use them to reason about subsampled time-series, continuous-time Granger non-causality and local independence. Finally, we discuss how constraint-based causal discovery
algorithms (PC, FCI, CCD, CCI) apply directly to SDEs within our framework when conditional independence between sample paths can be consistently tested.
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Statistical Methodology
Extracting Bayesian Evidence from Frequentist p-Values
Frederik Aust, Samuel Pawel and Eric-Jan Wagenmakers
The $p$-value and the Bayes factor are measures of evidence that are often considered to be philosophically and mathematically incompatible: The $p$-value quantifies conflict between data and $H_0$ ("surprise"), whereas the Bayes factor quantifies the relative predictive accuracy of $H_0$ versus $H_1$ ("evidence"). We revisit Jeffreys's Approximate Bayes factor (JAB) – a simple, largely overlooked approximation dating back to the 1930s – which connects these two paradigms for objective hypothesis testing of the existence of an effect. Under a unit-information prior the approximation requires only the $p$-value and the effective sample size $n_\text{eff}$. We clarify the core assumptions and boundary conditions for the application of JAB and show across 704 published $t$-tests and 39 comparisons of proportions that JAB approximates objective Bayes factors remarkably well. The connection between $p$-values and JAB has a practical implication: The evidence implied by a $p$-value depends strongly on $n_\text{eff}$. Conventional verbal labels for $p$-values (e.g., "strong surprise" for .001 < $p$ < .01) correspond to similarly graded Bayes factors only around $n_\text{eff} \approx 8$; for larger samples the same $p$-value implies weaker evidence. In moderately sized to large samples, $p > .10$ can amount to moderate or even strong evidence for $H_0$. JAB offers a cheap, sample-size-sensitive supplement to $p$-values, computable from routinely reported statistics, that remains valid even under optional stopping.
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Machine Learning (Statistics) · Cross-listed from eess.SP
Dynamic Online Processor-Native Inference for State Estimation
Orestis Kaparounakis
Sensor-rich data-driven applications increasingly use
Bayesian approaches to infer latent states of dynamic systems from noisy sensor measurements and physical models. Yet the computation of the likelihood remains an essential bottleneck for accurate posteriors and performant inference. This paper presents a
Bayesian filtering technique that uses processor-native uncertainty tracking for both uncertainty propagation and inference. The technique implements deterministic hierarchical importance restructuring through a native operation, giving deterministic latency and bounded
memory use for arbitrary models written as program code.
Benchmarks across three nonlinear state-space systems compare the approach against particle filters and Monte-Carlo-based likelihood
estimators. The technique enables deterministic approximate filtering with as high as 805$\times$ average speedup against direct Monte Carlo work at matched result quality for model evaluation, and Pareto-dominant accuracy-latency trade-offs for posterior inference while remaining competitive in RMSE with baseline particle filters.
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Machine Learning (Statistics)
Learning the Graphical Nature of Symmetries
Rashid Barket, Enrico Grimaldi, Yacoub Hendi et al. (+3 more)
Finite groups are rigid algebraic objects, whose Cayley graphs expose a rich network geometry through which group-theoretic structure can be measured, compared, and learned. In this paper, a
dataset of $131{,}406$ Cayley graphs is constructed, covering all groups of order at most $767$ except order $512$, recording exact algebraic labels for group properties together with a broad collection of graph, cycle, distance, and spectral statistics. This census aims to provide novel
benchmarks for studying how finite-group properties are reflected in Cayley graph observables. It also yields new enumerative contributions: alongside recovering known OEIS sequences for standard group classes, new sequences for monolithic groups and for groups generated by at most three, four, and five elements are contributed to the OEIS. The accompanying network analysis identifies several empirical regularities and formulates testable
conjectures, including relationships involving square clustering, Cayley graph diameter, average graph disorder, and spectral eigengaps of nilpotent groups. Finally, a comparison between classical models, an MLP, and graph neural network architectures is performed for predicting algebraic group properties directly from Cayley graph data. The results show that engineered graph statistics are highly informative, while GNNs, especially GIN and in some fixed-order settings GCN, can recover substantial structural signal directly from the graph. Such that graph-aware architectures show phases of optimality on these group-theoretic graph representations.
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All authors Rashid Barket, Enrico Grimaldi, Yacoub Hendi, Edward Hirst, Adam Onus, Harmeet Singh
Machine Learning (Statistics) · Cross-listed from cs.LG
Are we Merging the Right Models? Impact of Expert Training Duration on Model Merging for LLMs
Nikita Kozodoi, Zainab Afolabi and Jack Butler
Multi-task model merging combines separately trained expert models into a single model that handles all tasks without co-training. Standard practice merges experts at their optimal validation loss. We challenge this convention by systematically studying how training duration of domain experts affects the quality of the merged model. We fine-tune experts on five domains (Math, Code, Instruction Following,
Multilingual, and Safety) across three model sizes (Qwen 3.5 0.8B, 2B, and 4B), saving checkpoints from 25% to 500% of the optimal training steps and evaluating five merging methods at each duration. Our findings reveal a striking method-dependent pattern: simple averaging degrades sharply with overfitting, while sparsification-based methods achieve their best performance well past the validation optimum. We formalize this through bias-variance decomposition analysis, drawing a parallel to random forests where averaging benefits from high-variance individual learners. These results suggest that training duration and merging method should be chosen jointly rather than independently.
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Machine Learning (Statistics) · Cross-listed from econ.EM
Removable Defects: The Economics and Limits of Deliberate Deficiency
Cheng Qian
A specialist tolerates blind spots that a generalist does not. Usually this is treated as a cost to be minimized. We treat it as a design variable: a deficiency can be kept because it pays and removed on demand in the rare situation where it would be fatal, by routing to a compensation channel. We give three results. First, an advantage condition under which keeping the deficiency is a computable economic position; structurally it is the Ehrlich-Becker
market-vs-self-insurance margin applied to a competence gap, with the detector as a Townsend costly-state-verification technology. Second, a two-sided characterization of removability. A coupling lemma shows that when the deficiency is a coarsening of perception, no switch can separate benefit from harm, yielding a converse (a confounded detector earns zero premium, and any within-defect policy insisting on positive premium is driven, under multiplicative dynamics, to negative long-run growth) and an achievability result (a detector outside the deficiency earns a positive premium). Together, over structured uncertainty classes with severity capped or miss rate O(1/L): a defect is profitably removable iff the detector-relevant distinction survives the restriction and the advantage condition holds; the premium is the support function of the class's ROC set at an economic price vector. Third, observation defects and capacity defects differ exactly on whether access to the deployment distribution rescues them; the gap decomposes as cross-leak plus a closure deficit, and per-task randomization buys back the latter, never the former. The detector can be learned from declared fatal categories at a training bill linear in loss severity (up to a log factor). The results synthesize Chow's reject option, Kelly growth under ruin, and selective prediction.
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Statistics Applications
Improved Global Ocean Heat Content Estimation by Modeling Vertical Spatio-Temporal Dependence
Thea Sukianto, Donata Giglio and Mikael Kuusela
Estimating ocean heat content (OHC) with reliable uncertainties is critical for understanding and monitoring the
evolution of Earth's
climate, as the ocean has stored most of the energy accumulated in the
climate system due to Earth Energy Imbalance. Here, we use Argo profiling float data from 2004-2022 to map OHC. As fewer Argo observations are available deeper in the water column, previous studies have partitioned the ocean into at least two pressure layers and mapped each separately, which complicates the estimation of uncertainties when the maps are summed to get the total OHC. In this work, we consider the case of two pressure layers and propose an improved mapping and uncertainty quantification method using bivariate locally stationary Gaussian processes and conditional simulations to map the two sections jointly while accounting for the correlation between them. We find that modeling this correlation results in improved OHC anomaly mapping and up to a 15 percent reduction of global OHC anomaly uncertainties in comparison to mapping the two layers separately without accounting for their dependence. These estimated uncertainties are essential to analyze the statistical significance of OHC anomalies on both regional and global scales, which we demonstrate using several climatological case studies.
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Statistical Computation
Tutorial for Bayesian Factor Models
Peter Dunson and Ciprian M. Crainiceanu
Bayesian Factor Models (BFM) are well-established models that decompose the observed variability in a set of mean-zero, independent, and uncorrelated factors (random effects). While Factor Analysis (FA) was introduced in 1904 by Spearman, there has been renewed interest in inferential and computational methods that can adapt to large and complex modern data sets that are now routinely collected in a variety of applications. We provide reproducible, harmonized, and fast software for a variety of recent BFMs that allows the direct comparison of methods and provides a one-stop tutorial for the BFMs and their implementation. We neither endorse nor recommend any of the methods for a particular application; we simply provide a previously unavailable harmonized and reproducible common platform for BFMs. The accompanying factorverse R package is available at https://github.com/peterdunson/factorverse.
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Machine Learning (Statistics) · Cross-listed from cs.LG
Relaxing Faithfulness with Intervention-Only Causal Discovery
Bijan Mazaheri, Jiaqi Zhang and Caroline Uhler
Causal discovery
algorithms learn a network that describes the causal dependencies among random variables. A common workflow involves first utilizing conditional independence properties on observational data to determine partially directed causal relationships, then applying interventions to orient the unknown causal directions. A critical assumption for the first step is faithfulness: a requirement that causally linked variables exhibit statistical dependence. Many natural systems include buffering and stabilizing pathways that cancel out to achieve systemic robustness. This cancellation of pathways violates faithfulness, leading causal discovery
algorithms to incorrectly remove causal dependencies. In this paper, we argue that hard interventions contain information about the presence/absence of causal linkage that is overlooked in the first stage of structure discovery. We show that a mild assumption – called intervention-immediacy faithfulness – that allows cancellations, is sufficient to nonparametrically identify causal structures with hard interventions. These results position interventions as the primary carriers of information about causal structure, which should take precedence over conditional independence testing. To flip the paradigm, we also specify equivalence classes when the identification criteria are not met due to limitations in the scope of interventions.
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Other Statistics
The Evolution and Interpretation of "Statistical Purposes"
Michael B. Hawes, John L. Eltinge, Paul S. Marck et al. (+2 more)
National Statistical Organizations (NSOs) and other groups often use the term "for statistical purposes only" in communication with prospective respondents, data users and other stakeholders. This term also provides an important anchor for many NSO decisions on operations and ethics. Although public communication often omits a clear operational definition of this term, this paper will show that reviews of underlying laws and policies identify two predominant criteria: (1) production of statistical information about relatively large population aggregates, with the intention of creating a general public benefit; and (2) protection of the confidentiality of data collected about data subjects and a related prohibition against the use of information provided by or about data subjects for legal or regulatory action against those individuals or organizations. We then explore how this term exists, and is often interpreted, within a much broader landscape of legal requirements and of scientific and professional codes of practice, and provide a broader definition for consideration based on these and other ethical frameworks. This paper closes by highlighting several areas that warrant further discussion to better position NSOs to navigate these challenges in the future.
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All authors Michael B. Hawes, John L. Eltinge, Paul S. Marck, Danielle C. Neiman, Sallie Ann Keller
Statistics Applications
Multiple Instrument Methods Comparison by Precision weighted Deming Regression
Douglas M Hawkins and Jessica J Kraker
In methods comparison (MC) studies, specimens are tested using two or more instruments with the objective of establishing the statistical relationship between the different instruments readings. Unlike regular regression, this is an errors in variables problem. Relationships may be fitted parametrically (Deming regression) or non-parametrically (Passing Bablok or PB regression.) In clinical chemistry settings, the measurement variability is rarely constant, but generally increases with increasing analyte values. Precision weighted Deming regression models this variability and incorporates it into the fitting. The simplest setting of comparing two instruments is discussed in (1) and implemented in an R package (2). PB makes minimal distributional assumptions. Its classical two-instrument implementation has recently been extended to multiple instruments (3). This work extends the two-instrument Deming model of (1) to multiple instruments, developing
algorithms for fitting, for formal inference, for residual analysis, and for outlier detection and diagnosis.
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Statistics Theory
A uniform relative deviation inequality for VC-subgraph classes
François Portier
We establish a new Bernstein-type deviation inequality for classes of functions whose complexity is characterized through subgraphs. The inequality is non-asymptotic, involves explicit constants, and features a relative normalization by the probability level. Applied to kernel density estimation, it produces a location and bandwidth-adaptive error bound between the
estimator and the smoothed density, holding simultaneously over all points on the real line and all positive bandwidths. The proof is elementary, combining a new symmetrization principle, which incorporates the relative normalization, with the maximal sub-Gaussian inequality, and requires neither concentration nor
entropy-integral arguments. When specialized to classes of sets, our technique improves the constants in the classical Vapnik-Chervonenkis inequality with relative deviation of Anthony and Shawe-Taylor (1993), reducing the factor 4 S A (2n) to S A (2n) in the right-tail inequality and to 3 S A (2n) in the left-tail inequality.
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Statistical Methodology
Calibrated Horizon-Weighted Local Projection Designs for Markov Switchbacks
Makoto Nakakita and Teruo Nakatsuma
We study temporal assignment design for Markov switchback experiments when the reported object is a dynamic local-projection target. We develop a calibrated selector that chooses the feasible persistence minimizing the covariance, HAC, residual-bootstrap, or realized-schedule risk of the
estimator and reporting object specified before the experiment. A balanced homoskedastic Markov
benchmark yields a closed form because the lagged-assignment information
matrix is AR(1)-Toeplitz with a tridiagonal inverse. The
benchmark maps local-projection reporting weights into persistence recommendations within a prespecified first-order Markov class. Field recommendations replace the
benchmark covariance with residualized, serially dependent, pilot-calibrated, or randomization-based risk. A semi-synthetic Low Carbon London evaluation uses observed half-hourly baseline dynamics and known injected responses to assess design risk. It evaluates the covariance calculations under realistic load autocovariance and identifies when calibrated covariance selection should replace the homoskedastic Markov formula. Near-boundary designs use randomization-first inference when many-spell normal approximations are unsupported.
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Machine Learning (Statistics)
Diversified Multinomial Logit Contextual Bandits
Heesang Ann, Taehyun Hwang and Min-hwan Oh
Existing contextual multinomial logit (MNL) bandits model relevance-driven choice but ignore the potential benefits of within-assortment diversity, while submodular/combinatorial bandits encode diversity in rewards but lack structured choice probabilities. We bridge this gap with the $\textit{diversified multinomial logit}$ (DMNL) contextual bandit, which augments MNL choice probabilities with a generally submodular diversity function, thereby formalizing the relevance–diversity trade-off within a single model. Incorporating diversity renders exact MNL assortment optimization intractable. We propose a $\textit{white-box}$ UCB-based
algorithm, $\texttt{OFU-DMNL}$, that constructs assortments item-wise by maximizing optimistic marginal gains, avoids black-box optimization oracles. We show that $\texttt{OFU-DMNL}$ achieves at least a $(1-\frac{1}{e+1})$-$\textit{approximate}$ regret bound $\tilde{O}\left(d \sqrt{T/K}\right)$, where $d$ is the context dimension, $K$ the maximum assortment size, and $T$ the horizon, and attains an improved approximation factor over standard submodular baselines. Experiments demonstrate consistent gains and, relative to exhaustive enumeration, comparable regret with substantially lower runtime. Overall, DMNL bandits provide a practical foundation for diversity-aware assortment optimization under uncertainty, and $\texttt{OFU-DMNL}$ offers a statistically and computationally efficient solution.
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Machine Learning (Statistics) · Cross-listed from cs.LG
Bet on Features: Anytime-Valid and Feature-Aware Auditing of Conditional Quantile Forecasters
Ivane Antonov, Sohom Mukherjee, Richard Pibernik et al. (+1 more)
Black-box conditional
quantile forecasts are widely used for sequential decisions under asymmetric costs, such as inventory planning in supply chain management. Once deployed, such forecasters must be monitored continuously as data streams drift and regimes change; this invalidates standard, fixed-horizon backtests for calibration. Further, existing backtests do not take into account that the notion of calibration is, in fact, information-dependent: forecasts can look calibrated to an auditor with coarse information while being miscalibrated to an auditor with richer information. We develop a distribution-free and game-theoretic testing framework for continuously
auditing black-box conditional
quantile forecasters with non-i.i.d. losses, such that the resulting evidence process is powerful against predictably chosen alternatives specified by the features available to the auditor. We first formalize notions of conditional
quantile calibration when different sets of features are available to the auditor, establishing that the coarseness of the auditor's information set determines the hardness of the testing problem. We then identify the sets of alternatives for which the auditor can achieve power, and focusing on contextual bets linear in the features, we derive finite-time detection guarantees for such alternatives, all without an i.i.d. assumption. The resulting evidence processes are interpretable at the feature level, as they quantify fine-grained, "feature-aware" evidence for miscalibration. We empirically validate these methods on simulated and real data, finding that a popular time series forecaster (Chronos-2) is highly miscalibrated w.r.t. multiple relevant features.
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All authors Ivane Antonov, Sohom Mukherjee, Richard Pibernik, Yo Joong Choe