Optics
Non-equilibrium quantum plasmonics in nanoparticle-on-mirror nanocavities
Artur Avdizhiyan, Ilya Razdolski and Anton Yu. Bykov
We develop a novel approach to ultrafast optical modulation of
quantum-mechanical phenomena at the interface of plasmonic metals. Focusing on efficient and versatile nanoparticle-on-mirror plasmonic nanocavities, we discuss indirect control of plasmonic properties through
laser-induced ballistic hot electron injection. Overcoming the limitations precluding the observations of
laser-driven mesoscopic phenomena in the time domain with state-of-the-art amplified sources, our proposed experimental approach can be readily realized without irreversible optical damage and holds immense potential for the future development of ultrafast electrodynamics in nanogaps, applications in photochemistry and nanoscale control of
quantum emitters. Agreeing with the results of numerical simulations, an intuitive microscopic model for the proposed time-dependent mesoscopic electrodynamics facilitates the analysis of the temperature-induced modulation of
quantum plasmonic properties in a broad parameter space. Our work expands the realm of
quantum nanophotonics onto non-
equilibrium electronic systems and facilitates the development of ultrafast methods in active plasmonics.
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Instrumentation and Detectors
T-DAQ-P: a portable tablet-form multi-stream data acquisition and contextual telemetry platform based on COTS modules and a custom integration layer
D. Tagnani and M. Andreotti
We present T-DAQ-P, a compact and portable data acquisition and telemetry platform designed to support detector deployments in laboratory and field conditions by integrating event streaming, slow-control telemetry, and operator-oriented commissioning tools in a single unit. The system combines a Raspberry Pi 5 host for multi-stream ingestion, visualization, and storage with an Arduino UNO R4 WiFi microcontroller dedicated to sensor acquisition. The electronics integrate commercial off-the-shelf (COTS) modules through an engineered interface layer including protected power distribution, logic-level adaptation, and a DB-37 expansion connector exposing I2C-SPI-ADC lines for external instrumentation. On the telemetry side, the microcontroller firmware performs automatic I2C discovery, conditional sensor handling, and outputs framed NMEA-like messages with XOR checksum and explicit block delimiters, enabling robust parsing and synchronization on the host. A finite-state control (STOP-RUN-SIM-INIT) and watchdog-style recovery actions implement resilience under partial hardware availability and field failures. The host software adopts a multi-process architecture with independent readers for event, telemetry, and actuator streams, message queues for isolation, and coherent time-stamped logging across streams. A simulation mode and integrated command channel allow end-to-end pipeline verification and rapid commissioning without full sensor availability. The paper details architecture, electronics integration, firmware protocol, host software design, and functional/engineering validation procedures, providing a reproducible blueprint for portable instrumentation readout and contextual telemetry acquisition.
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Computational Physics · Cross-listed from cond-mat.other
Demonstration of AI-Assisted Scientific Workflow on Canonical Benchmarks
Kin Hung Fung
We present a fully reproducible demonstration of an AI-assisted scientific workflow designed for a broad physics, mathematics, and computer-science readership. The initial project artifact stack was generated from one single user
prompt and then reviewed and curated for submission by the human author. Rather than claiming a new scientific discovery, the manuscript uses canonical
benchmark problems with exact, manufactured, or independently checkable answers. The analytical component starts from the one-dimensional
quantum harmonic oscillator, derives its dimensionless form, and validates finite-difference eigenpairs against exact Hermite-function
benchmarks. The numerical partial-differential-equation component solves a heat equation with a known modal solution and a Poisson problem verified by a manufactured solution, with explicit convergence studies. The inverse-modeling component fits synthetic damped-oscillation data by nonlinear least squares and quantifies parametric uncertainty by bootstrap resampling. The computational-science component compares dense and sparse eigensolvers and contrasts direct and iterative sparse linear solvers, with careful interpretation of machine-dependent timing data. Taken together, the results show that contemporary AI can already serve as a useful scientific copilot for derivation, implementation, validation, visualization, and manuscript preparation, provided that each stage is constrained by
benchmark theory, explicit verification, and transparent artifacts. The demonstration is therefore relevant not because the underlying science is novel, but because it offers a concrete template for trustworthy AI use in technical research practice.
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Atomic Physics · Cross-listed from cond-mat.quant-gas
Quantum simulation of the Haldane phase using open shell molecules
Suman Aich, Ceren B. Dag, H.A. Fertig et al. (+2 more)
Dipolar molecules in optical traps are a versatile platform for studying many-body phases of
quantum matter in the presence of strong and long-range interactions. The dipolar interactions in such setups can be enabled by microwave driving opposite parity rotational levels of the molecules. We find that the regime where the $N=0,J=1/2,F=1$ state is coupled to the $N=1,J=3/2,F=2$
manifold with circularly polarized microwaves, in the presence of a small
magnetic field, can lead to
spin-1
quantum magnetic Hamiltonians, due to the decoupling between electron
spin and orbit, that is unique to the $^2\Sigma$ ground state molecules. We demonstrate that in one dimension, the phase diagram associated with this
Hamiltonian, computed via tensor network methods, hosts the celebrated Haldane phase. We find that the Haldane phase persists even in the presence of SU(3) correction terms that break the SU(2)
algebra of the
Hamiltonian. We discuss the feasibility of the proposed scheme for $^2\Sigma$ molecules with large rotational constants such as the directly
laser cooled molecule MgF for future experiments.
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All authors Suman Aich, Ceren B. Dag, H.A. Fertig, Debayan Mitra, Babak Seradjeh
Medical Physics
A hybrid statistical sampling and iterative regularization method in sparse-view computed tomography
Huiying Li and Yizhuang Song
Sparse-view computed
tomography (CT) is an effective method to reduce the radiation exposure in medical imaging. To reduce the severe streaking artifacts that occur in reconstructed images due to violation of the Nyquist/Shannon sampling criterion, regularization is widely used to minimize the cost function. However, the iterative methods may lead to the accumulation and propagation of errors, which adversely affects the restoration of image details and textures. In this paper, we propose a hybrid model that integrates statistical sampling with iterative regularization to simultaneously shorten the sampling time and enhance the reconstruction quality. The proposed method is validated using three
datasets: the Shepp-Logan phantom, the actual walnut X-ray projections provided by the Finnish Inverse Problems Society, and the clinical lung CT images.
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Optics
Nonlinear optical thermodynamics from a van der Waals-type mean-field theory
Meng Lian, Zhongfei Xiong, Yuntian Chen et al. (+1 more)
Optical thermodynamics offers a distinctive framework for understanding complex phenomena in multimode systems, yet standard ideal-gas-like formulation neglects the effect of nonlinear interaction on thermodynamic quantities, significantly restricting its range of validity. Here, we overcome this limitation by developing a mean-field thermodynamic theory that incorporates the nonlinear renormalization of the mode spectrum. The resulting nonlinear equation of state, analogous to that of the van der Waals for gases, enables the prediction of power-dependent mode localization and the description of optical cooling and heating in photonic Joule-Thomson expansion. Our work establishes a unified thermodynamic perspective on the nonlinear control and transport of optical waves.
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All authors Meng Lian, Zhongfei Xiong, Yuntian Chen, Jing-Tao Lü
Atomic Physics
Realization of the SI Second Defined by Geometric Mean of Multiple Clock Transitions
Fang Fang, Chaowei Wang, Yani Zuo et al. (+1 more)
The current definition of the SI second is based on the 133Cs ground-state hyperfine transition in the microwave domain, with the most accurate realizations achieving fractional frequency uncertainties of about (1-2)E16. In contrast, state-of-the-art optical clocks now demonstrate estimated uncertainties two to three orders of magnitude lower, prompting discussion on the redefinition of the SI second. Several options for the new definition have been proposed, one of which introduces a constant N defined as the weighted
geometric mean of multiple clock transition frequencies. In this work, we investigate how N can be practically realized when not all defining transitions are available and when multiple optical clocks operate with different performance levels and non-overlapping uptimes. We consider two complementary realization and reconstruction routes. One route is based on
geometric-mean combinations, and the other is based on arithmetic-mean combinations. We derive consistent uncertainty expressions that incorporate both measurement uncertainties and, where required, uncertainties of recommended frequencies or frequency ratios. Using analytic three-transition case studies, we identify the parameter regimes in which each route yields a lower total uncertainty and provide explicit conditions for the crossover between them. We further address the dominant role of dead time when a hydrogen maser serves as a flywheel reference by introducing a time-segmented, time-weighted combination based on coefficient and covariance
matrices, which accounts for overlapping operation and correlations across measurement intervals. Our findings offer practical guidance for minimizing total uncertainty in multi-clock realizations and contribute to ongoing efforts toward redefining the SI second.
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All authors Fang Fang, Chaowei Wang, Yani Zuo, Shaoyang Dai
Plasma Physics
Near-Wall Pathways of Anomalous Electron Transport in Hall Thrusters Revealed by 3D PIC Simulations
Zhe Liu, Zhongping Zhao and Yinjian Zhao
Cross-field electron transport in
Hall thrusters is widely attributed to high-frequency $E\times B$ instabilities, yet its net spatial pathway remains poorly resolved. Here we perform instability-resolving three-dimensional particle-in-
cell simulations of a
Hall thruster using a boundary-faithful and highly integrated framework. The model incorporates a realistic
magnetic-field configuration, self-consistent dielectric wall charging, secondary electron emission, Monte Carlo ionization collisions, a self-consistent continuum neutral-gas
evolution model, and an open near-plume
outflow treatment. From the strongly oscillatory three-dimensional fields, we extract the net instability-driven transport by time and azimuthal averaging of the correlation term $\langle n_e E_y\rangle$ and the corresponding effective perpendicular mobility. The simulations reveal that anomalous electron transport is not distributed uniformly across the channel cross section. Instead, it self-organizes into persistent near-wall pathways connected to the near-exit region. By comparing conducting-wall, ceramic-wall-with-secondary-emission, and open-
outflow closures, we show that the near-wall transport
topology is robust, while the boundary treatment mainly redistributes the detailed strength of the pathway and its coupling to the exit and near-plume region. These results demonstrate a previously unresolved spatial organization of instability-driven anomalous transport in
Hall thrusters and highlight the unique role of 3D PIC simulations in revealing it.
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Geophysics
Long-term marine acoustic and seismic monitoring using distributed acoustic sensing and deep learning
Chun Zhang, Weiqiang Zhu, Barbara A. Romanowicz et al. (+3 more)
The ocean remains one of the least instrumented parts of Earth, and many geophysical, biological, and anthropogenic signals go undetected for lack of instrumentation. Distributed acoustic sensing (DAS) can transform submarine fiber-optic cables into dense seafloor sensor arrays, but extracting diverse signals from massive DAS recordings remains challenging. Here we present DASNet, a deep learning framework that detects, classifies, and picks arrival times of diverse marine signals in continuous DAS data. Applied to nearly four years of Seafloor Fiber-Optic Array in Monterey Bay recordings, DASNet identifies more than 620,000 events. These detections reveal local earthquakes; distant earthquake- and volcanic-eruption-generated T-waves from the southwestern Pacific and mid-ocean ridge systems; more than 510,000 blue and fin whale calls with seasonal and interannual variability consistent with hydrophone records; and vessel traffic near the cable. Together, these results show that submarine fiber-optic cables combined with deep learning enable scalable, high-resolution ocean monitoring.
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All authors Chun Zhang, Weiqiang Zhu, Barbara A. Romanowicz, Richard M Allen, Kenichi Soga, Yuxin Wu
Computational Physics · Cross-listed from cond-mat.mtrl-sci
Predicting electron-phonon coupling and electronic transport at the moiré scale in twisted bilayer graphene
David J. Abramovitch and Marco Bernardi
First-principles calculations can accurately describe electron-
phonon (e-ph) interactions and electronic transport in a wide range of materials, but are currently limited to unit
cells with up to $\sim$100 atoms due to computational cost. Here, we develop an atomistic electronic potential with Holstein- and Peierls-like terms for modeling e-ph interactions and
phonon-limited electronic transport that enables the study of moiré systems with thousands of atoms per unit
cell. This method can accurately reproduce first-principles e-ph coupling and resistivity in
graphene and large-angle twisted
bilayer graphene (TBG). Using this approach, we study TBG over a range of twist angles down to 1.6$^\circ$ (5044-atom unit
cell), and report the
evolution of e-ph interactions and
phonon-limited resistivity with twist angle. The predicted resistivity increases by two orders of magnitude between 13.2$^\circ$ and 1.6$^\circ$, driven by the progressive reduction of the electronic energy scale. Our calculations can predict key experimental trends in 2.0$^\circ$ and 1.6$^\circ$ TBG, including the resistivity and its dependence on temperature and band filling. Our work establishes a scalable approach for quantitative studies of e-ph interactions and transport in moiré materials and other systems with previously inaccessible length scales.
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Atomic Physics
Closed-loop dual-channel atomic beam interferometry beyond the half-fringe limit
Wei-Chen Jia, Yue Xin, Ke Shen et al. (+5 more)
Atom interferometric inertial sensors offer exceptional sensitivity but are fundamentally constrained by the periodic phase response of matter-wave interference, which imposes an intrinsic half-fringe dynamic-range limit and prevents continuous inertial tracking. In multi-axis configurations, additional cross coupling between acceleration and rotation further complicates closed-loop operation. Here we demonstrate the first dual-channel closed-loop operation of an atomic beam interferometer, realizing decoupled feedback control of acceleration- and rotation-induced phases and overcoming the half-fringe limitation. Using continuous, transversely cooled $^{87}$Rb atomic beams, the interferometric phases associated with rotation and acceleration are independently extracted, tracked across multiple fringes, and actively compensated through Raman frequency modulation. This closed-loop scheme enables unambiguous measurements up to $\pm1\,\mathrm{^{\circ}/s}$ in rotation and $\pm0.17\,\mathrm{g}$ in acceleration while maintaining high fringe contrast, corresponding to nearly two orders-of-magnitude extension beyond the conventional half-fringe limit. The sensor achieves a long-term stability of $4\times10^{-4}\,\mathrm{^{\circ}/h}$ for rotation and $4\,\mathrm{\mu g}$ for acceleration at an averaging time of $1000\,\mathrm{s}$. By converting the intrinsically periodic interferometric response into stabilized phase-encoded inertial channels, this work establishes a new operating regime for atomic beam interferometry and advances matter-wave sensors toward practical
quantum inertial
navigation under dynamic conditions.
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All authors Wei-Chen Jia, Yue Xin, Ke Shen, Zhi-Xin Meng, Xiang-Xiang Lu, Yi-Cheng Deng, Yuan-Xing Liu, Yan-Ying Feng
Computational Physics · Cross-listed from cond-mat.str-el
Neural network backflow for ab-initio solid calculations
An-Jun Liu and Bryan K. Clark
Accurately simulating extended periodic systems is a central challenge in condensed matter physics. Neural
quantum states (NQS) offer expressive wavefunctions for this task but face issues with scalability. In this work, we successfully extend the neural network backflow (NNBF) approach to ab-initio solid-state materials. Building on our scalable optimization framework for molecules [Liu et al., PRB 112, 155162 (2025)], we introduce a two-stage
pruning strategy to manage the massive configuration space expansions: by utilizing a computationally cheap, physics-informed importance proxy, we devote exact NNBF amplitude evaluations solely to the most relevant determinants, significantly improving optimization efficiency, energy estimation, and convergence. Our framework achieves state-of-the-art accuracy across diverse solid-state
benchmarks. For 1D hydrogen chains, NNBF matches or surpasses DMRG and AFQMC, remains robust in strongly correlated bond-breaking regimes where coupled-cluster methods fail, and smoothly extrapolates to the thermodynamic limit. We further demonstrate its scalability by computing ground-state potential energy curves for 2D
graphene and 3D silicon. Finally, ablation studies validate the computational savings of our
pruning strategy and highlight the dependence of the NNBF energies on basis sets.
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Geophysics
Thermodynamic criticality in seismicity: Uniqueness of surface-energy scaling in the fragment-asperity model
O. Sotolongo-Costa, A. V. Mora-Rodríguez and M. E. Mora-Ramos
We propose that a linear relation between the energy of stress-bearing interactions and the surface of contact within the fragment-asperity model for earthquakes. It reveals as the only one that leads to a closed elementary form for a well-defined total
entropy as a function of non-extensivity parameter, $q$. By writing the total Tsallis
entropy as a function of $q$, a critical range of values is identified: $1.4\lesssim q\lesssim 1.8$. Such interval of $q$-values corresponds to the strong variation of
entropy and contains the most of reported results for this parameter determined for main-shocks around the world in recent decades, indicating the role of $q$ as a criticality indicator, more than just a fitting parameter.
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Optics · Cross-listed from quant-ph
Engineering walk-off-induced orbital angular momentum spectrum in spontaneous parametric downconversion
Yang Xu and Robert W. Boyd
Spontaneous parametric downconversion (SPDC) has been considered as a reliable source of high- dimensional entangled states in orbital angular momentum (OAM) basis. In real-world experiments, the spatial walk-off of the pump often degrades the fidelity of the generated
quantum state. Since the walk-off effect breaks the rotational
symmetry of the system, the conservation of total OAM is violated. Although the compensation of walk-off effects has become a well-established experimental technique, a systematic modal analysis of the spatial walk-off effect is still incomplete for SPDC. Here, we quantitatively analyze the violation of OAM conservation due to the pump walk-off effect in SPDC processes. We have derived a scaling law of the total OAM distribution with respect to the pump walk-off angle. We have also explored the feasibility of using the spatial walk-off as a mechanism to engineer the generated
quantum state. Our study has provided guidelines for the generation of OAM-entangled state under realistic experimental conditions.
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Chemical Physics
Reproducible Orchestration of Best Practices for Reaction Path Optimization with the Nudged Elastic Band
Rohit Goswami
The nudged elastic band (NEB) method is the standard approach for finding minimum energy paths and transition states on potential energy surfaces. Practical NEB calculations require several pre-processing steps: endpoint minimization, structural
alignment, and initial path generation. These steps are typically handled by ad-hoc scripts or manual intervention, introducing errors and hindering reproducibility. We present a fully automated, open-source Snakemake workflow for small gas phase molecules that couples modern machine learning potentials (PET-MAD) to the eOn saddle point search software. Each step of the calculation lifecycle is encoded as an explicit dependency graph, from model
retrieval and endpoint preparation through path initialization and band optimization. The workflow resolves all software dependencies from conda-forge, ensuring identical execution across platforms. Validation on the HCN to HNC isomerization demonstrates that the automated pipeline recovers the known single-barrier energy profile and product energy without manual intervention.
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Physics Education
LLM-as-a-judge validity is strongly task-dependent across physics assessment formats
Will Yeadon, Tom Hardy, Paul Mackay et al. (+1 more)
As large
language models (LLMs) are increasingly considered for automated assessment and feedback, understanding when LLM marking is valid is essential. We evaluate LLM-as-a-judge marking across four settings spanning three assessment formats - structured questions, written essays, and scientific plots - comparing GPT-5.2, Grok 4.1, Claude Opus 4.5, DeepSeek-V3.2, Gemini 3 Pro, and committee aggregations against human markers under blind, solution-provided, false-solution, and anchored conditions. We distinguish absolute accuracy from rank-order agreement, since a marking system can match the distribution of human marks while failing to order responses by quality. Across task types, performance is sharply task-dependent. For blind university exam questions ($n=771$) and secondary and university structured questions ($n=1151$), models show robust rank-order agreement with human markers (Spearman $\rho > 0.6$), with official solutions reducing error and strengthening agreement. False solutions degrade absolute accuracy, showing that models defer to provided references, but leave rank-ordering intact. Essay marking behaves fundamentally differently. Across $n=55$ scripts, each containing five essays ($n=275$ essays total), blind AI marking is harsher and more variable than human marking and adding marking guidance does not improve rank-order agreement. Anchored exemplars shift the AI mean close to the human mean and compress variance below the human standard deviation, but rank-order agreement remains near-zero. For code-based plot elements ($n=1400$), models achieve high rank-order agreement ($\rho > 0.83$) with near-linear calibration. LLM marking validity depended strongly on the assessment task, and this held for every contemporary model tested. The results also show that the reliability of the human
benchmark constrains the claims that can be made about AI-human agreement.
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All authors Will Yeadon, Tom Hardy, Paul Mackay, Elise Agra
Applied Physics · Cross-listed from quant-ph
A Deep-Learning-Boosted Framework for Quantum Sensing with Nitrogen-Vacancy Centers in Diamond
Changyu Yao, Haochen Shen, Zhongyuan Liu et al. (+13 more)
Nitrogen-vacancy (NV) centers in diamond are a versatile
quantum sensing platform for high sensitivity measurements of
magnetic fields, temperature and strain with nanoscale spatial resolution. A common bottleneck is the analysis of optically detected
magnetic resonance (ODMR) spectra, where target quantities are encoded in resonance features. Conventional nonlinear fitting is often computationally expensive, sensitive to initialization, and prone to failure at low signal-to-noise ratio (SNR). Here we introduce a robust, efficient machine learning (ML) framework for real-time ODMR analysis based on a one-dimensional convolutional neural network (1D-CNN). The model performs direct parameter inference without initial guesses or iterative optimization, and is naturally parallelizable on graphics processing units (GPU) for high-throughput processing. We validate the approach on both synthetic and experimental
datasets, showing improved throughput, accuracy and robustness than standard nonlinear fitting, with the largest gains in the low-SNR regime. We further validate our methods in two representative sensing applications: diagnosing intracellular temperature changes using nanodiamond probes and widefield
magnetic imaging of superconducting
vortices in a high-temperature
superconductor. This deep-learning inference framework enables fast and reliable extraction of physical parameters from complex ODMR data and provides a scalable route to real-time
quantum sensing and imaging.
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All authors Changyu Yao, Haochen Shen, Zhongyuan Liu, Ruotian Gong, Md Shakil Bin Kashem, Stella Varnum, Liangyu Li, Hangyue Li, Yue Yu, Yizhou Wang, Xiaoshui Lin, Jonathan Brestoff, Chenyang Lu, Shankar Mukherji, Chuanwei Zhang, Chong Zu
General Physics
Quantum-Kinetic Dark Energy (QKDE): An effective dark energy framework with a covariantly completed time-dependent scalar kinetic normalization
Daniel Brown
A minimal effective dark-energy framework -
Quantum-Kinetic Dark Energy (QKDE) - is developed in which the scalar kinetic normalization carries a slow background time dependence through a covariantly completed clock field \chi such that K = K(\chi) > 0, while the Einstein-
Hilbert metric sector remains unmodified. The resulting effective action admits a diffeomorphism-invariant completion, and working in
unitary gauge \chi = t reproduces the background equations used in the numerical analysis. Within the effective field theory of dark energy (EFT-DE) description the model corresponds to \alpha_K > 0 with \alpha_B = \alpha_M = \alpha_T = \alpha_H = 0, implying luminal tensor propagation and a constant Planck mass. Scalar perturbations propagate with c_s^2 = 1, satisfy \Phi = \Psi, and source linear growth through the unmodified Einstein equations. Observable signatures therefore arise solely through the expansion history H(a) and the induced growth D(a). Two realizations of the kinetic normalization are studied: (i) a
curvature-motivated form K = 1 + \alpha R/M^2, and (ii) a phenomenological running K = 1 + K_0 (1 + z)^p. A reproducible numerical pipeline and Fisher analysis for H(z), distances, and f\sigma_8(z) are presented. The framework predicts \mu(a,k) = \Sigma(a,k) = 1, \eta(a,k) = 0, and c_T^2 = 1 on linear scales, providing clear falsifiable null tests. Earlier drafts circulated under the working title Scalar-Cost Dark Energy (SCDE).
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Space Physics · Cross-listed from astro-ph.SR
Dynamics of the Upwind Heliosphere Due to Data-Driven, Solar Wind and Magnetic Field Variations and Implications for Wave Propagation into the Very Local Interstellar Medium
Chika Onubogu, M. Opher, E. Powell et al. (+4 more)
We introduce an updated, time-dependent treatment to the split-tail ("croissant-like") heliosphere model with data-driven
solar wind conditions at 1 au, to study the
evolution of the heliosphere with
solar-cycle variations in
plasma speed,
plasma density, and
magnetic field intensity. The model produces a sub-Alfvénic and low beta region, not observed by the Voyagers, ~15 au ahead of the heliopause. The simulated
magnetic field and radial flow depart from Voyager observations in this region, indicating that time-dependent effects alone are not sufficient to understand this regime of the heliosheath. We decompose fast and slow magnetosonic wave modes from time-dependent
plasma pulse structures in the heliosheath, using a linear Riemann variable analysis, for the first time. Fast mode waves can both reflect at the heliopause and transmit into the interstellar medium, and their speeds are unaffected by the low beta
plasma regime in front of the heliopause. The model reproduces the pf2 jump in the
magnetic field at ~2020 in the interstellar medium and we attribute the source of pressure fronts observed by Voyager 1 in the interstellar medium, and pressure pulses observed by Voyager 2 in the heliosheath, to fast mode waves that are commonly recurring
solar-cycle features. The presence of fast mode waves drive a highly variable termination shock, with average radial speeds of 6.05 au yr$^{-1}$ $\pm$ 5.37 au yr$^{-1}$ in the New Horizons direction. We find that the termination shock has a sinusoidal-like oscillatory motion in the rising phase of the
solar cycle, and broad inward motions during the declining phase.
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All authors Chika Onubogu, M. Opher, E. Powell, S. Du, J. M. Sokół, J. D. Richardson, B. Van Der Holst
Physics and Society
Household Bubbling Strategies for Epidemic Control and Social Connectivity
L. D. Valdez and J. H. Peressutti
During the COVID-19 crisis, policymakers have implemented social bubble merging strategies, which allowed people from different households to meet and interact. Although these measures can mitigate the negative effects of extreme isolation, they also introduce additional contacts that may facilitate disease spread. As a result, several modeling studies have explored the epidemiological impact of different household-merging strategies, in which the selection of households to be merged is guided by specific demographic criteria, such as household size or the age composition of their members. Here, we investigate an alternative pairing strategy in which households are merged according to the number of economically active (working) members. We develop a mathematical model of household networks using real demographic data from multiple regions around the world, and simulate a lockdown scenario in which only economically active individuals can leave their households, while the remaining non-working members stay indoors. By using numerical simulations and the generating function technique, we then estimate the epidemic risk for different household merging strategies. We find that merging strategies based on the number of working members can keep epidemic risk at similar levels as those based on household size. Moreover, the worker-based approach allows significantly more people to form larger social bubbles, exceeding 40% of the population in some countries. We find that merging households with at most one worker provides the best balance between controlling epidemic risk and addressing people's need for social contact.
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Biological Physics
Digital unzipping of DNA through a solid-state nanopore: A theoretical study for base-by-base ratcheting
Tomoki Ohkubo
Solid-state nanopore DNA sequencers present mechanical and chemical stability, reusability, and large-scale integrability. However, their development is hindered by the absence of a
protein-free mechanism for controlling DNA translocation, which is accomplished by motor
proteins in their biological counterparts. Here, we propose and theoretically analyze a
protein-independent ratchet mechanism based on the unzipping of double-stranded DNA at the nanopore rim. When the transmembrane bias exceeds a certain threshold, the base pairs mechanically dissociate, allowing one strand to translocate while the other remains upstream. This unzipping process is known to slow DNA motion, suggesting that voltage pulses can trigger individual unzipping events at externally defined times, a concept referred to as digital unzipping. However, the intrinsic unzipping barrier is insufficient to provide the dwell times required for a reliable ionic-current readout; therefore, an additional mechanism is needed to hold the DNA in place between voltage pulses. To overcome this limitation, we introduce a reversible hold mechanism implemented via electrostatic attraction between DNA and a charged nanopore wall, which temporarily immobilizes the strand once the unzipping fork catches on the nanopore rim. Using a statistical-mechanical model, we track the
evolution of the mean and variance of DNA position through each ratchet cycle. Analytical expressions for the corresponding error probabilities show that submicrosecond switching of the hold mechanism enables base-by-base stepping with an error rate <5%. These results theoretically demonstrate that digital unzipping combined with a reversible hold mechanism can yield deterministic single-base motion, thus opening a viable route toward all-solid-state nanopore sequencing.
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Chemical Physics
Design Space of Self–Consistent Electrostatic Machine Learning Interatomic Potentials
William J. Baldwin, Ilyes Batatia, Martin Vondrák et al. (+2 more)
Machine learning interatomic potentials (MLIPs) have become widely used tools in atomistic simulations. For much of the history of this field, the most commonly employed architectures were based on short-ranged atomic energy contributions, and the assumption of locality still persists in many modern foundation models. While this approach has enabled efficient and accurate modelling for many use cases, it poses intrinsic limitations for systems where long-range electrostatics, charge transfer, or induced polarization play a central role. A growing body of work has proposed extensions that incorporate electrostatic effects, ranging from locally predicted atomic charges to self-consistent models. While these models have demonstrated success for specific examples, their underlying assumptions, and fundamental limitations are not yet well understood. In this work, we present a framework for treating electrostatics in MLIPs by viewing existing models as coarse-grained approximations to density functional theory (DFT). This perspective makes explicit the approximations involved, clarifies the physical meaning of the learned quantities, and reveals connections and equivalences between several previously proposed models. Using this formalism, we identify key design choices that define a broader design space of self-consistent electrostatic MLIPs. We implement salient points in this space using the MACE architecture and a shared representation of the charge density, enabling controlled comparisons between different approaches. Finally, we evaluate these models on two instructive test cases: metal-water interfaces, which probe the contrasting electrostatic response of conducting and insulating systems, and charged vacancies in silicon dioxide. Our results highlight the limitations of existing approaches and demonstrate how more expressive self-consistent models are needed to resolve failures.
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All authors William J. Baldwin, Ilyes Batatia, Martin Vondrák, Johannes T. Margraf, Gábor Csányi
Biological Physics
A Unified Variational Principle for Branching Transport Networks: Wave Impedance, Viscous Flow, and Tissue Metabolism
Riccardo Marchesi
The branching geometry of biological transport networks is characterized by a diameter scaling exponent $\alpha$. Two structural attractors compete: impedance matching ($\alpha \sim 2$) for pulsatile flow and viscous-metabolic minimization ($\alpha = 3$) for steady flow. Neither predicts the empirically observed $\alpha_{\mathrm{exp}} = 2.70 \pm 0.20$ in mammalian arterial trees. Incorporating sub-linear vessel-wall scaling $h(r) \propto r^p$ ($p = 0.77$) into a three-term metabolic cost rigorously breaks Murray's cubic law – via Cauchy's functional equation – bounding the static optimum to $\alpha_t \in [2.90, 2.94]$. We formulate a unified network-level Lagrangian balancing wave-reflection penalties against transport-metabolic costs. Because the operational duty cycle $\eta$ is uncertain over developmental timescales, we cast the optimization as a zero-sum game between network architecture and environment. Von Neumann's minimax
theorem – proved via strict monotonicity of the cost curves – yields a unique saddle point $(\alpha^, \eta^)$ satisfying an exact equal-cost condition. We further prove $N = 2$ uniquely maximizes the network stiffness ratio $\kappa_{\mathrm{eff}}(N)$, deriving binary branching as a structural consequence of the framework. For the porcine coronary tree ($G = 11$ generations), $\alpha^* = 2.72$, within $0.1\sigma$ of morphometric data. Sensitivity analysis confirms $|\Delta\alpha^*| < 0.01$ across physiological metabolic ranges; the prediction depends critically only on the histological exponent $p$ – a zero-parameter derivation from fundamental scaling principles that simultaneously recovers a cumulative wave dissipation of 6.3%, consistent with independent clinical estimates.
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Chemical Physics
Stochastic Collision Theory of Magnetism in Radical Fluids
Yoshiaki Uchida and Ryohei Kishi
How
stochastic, microscopic events generate deterministic, macroscopic properties is a fundamental question in physics. We address this question by developing a
quantum master equation model for concentrated radical solutions, where random molecular collisions govern the
magnetic properties of the system. Our theory reveals a simple mechanism: the first-order exchange contribution averages to zero over collisions, while the second-order term survives as an effective
ferromagnetic coupling that enhances magnetization. The model captures the experimentally observed trends in
magnetic behavior that deviate from conventional theories. Because the mechanism arises from statistical averaging, it may apply to a broader class of soft matter phenomena, including
liquid crystals.
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Chemical Physics · Cross-listed from cond-mat.mtrl-sci
Acrylamide Conformers: A Revision of Published Density Functional Theory Studies
William Scott and Estela Blaisten-Barojas
Acrylamide, with PubChem identifier CID=6579 is broadcasted to have four stable conformers contrasting with several journal publications characterizing only two or three. In this revision summary the discrepancy is clarified. Through very high precision density functional theory (DFT) calculations, three stable conformers and the three transition state barriers existing between them are verified to exist and validated with our own DFT calculations The most stable conformer is a planar molecular structure termed "sys" or "trans" in the literature. Meanwhile, a less stable structure termed "skew" pertains to two 3-dimensional structures that are energy-degenerate, but differ in their structure for being mirrored images of each other. Vibrational spectra, partial atomic charges, Cartesian coordinates, and Intrinsic Reaction Coordinate paths are summarized and recalculated with DFT at the $\omega$B97XD/Def2TZVPP level for the three stable acrylamide isomers: the sys/trans lowest in energy structure, and the two skew mirrored structures.
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