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Monday 5 January

Statistics Theory

On lead-lag estimation of non-synchronously observed point processes

This paper introduces a new theoretical framework for analyzing lead-lag relationships between point processes, with a special focus on applications to high-frequency financial data. In particular, we are interested in lead-lag relationships between two sequences of order arrival timestamps. The seminal work of Dobrev and Schaumburg proposed model-free measures of cross-market trading activity based on cross-counts of timestamps. While their method is known to yield reliable results, it faces limitations because its original formulation inherently relies on discrete-time observations, an issue we address in this study. Specifically, we formulate the problem of estimating lead-lag relationships in two point processes as that of estimating the shape of the cross-pair correlation function (CPCF) of a bivariate stationary point process, a quantity well-studied in the neuroscience and spatial statistics literature. Within this framework, the prevailing lead-lag time is defined as the location of the CPCF's sharpest peak. Under this interpretation, the peak location in Dobrev and Schaumburg's cross-market activity measure can be viewed as an estimator of the lead-lag time in the aforementioned sense. We further propose an alternative lead-lag time estimator based on kernel density estimation and show that it possesses desirable theoretical properties and delivers superior numerical performance. Empirical evidence from high-frequency financial data demonstrates the effectiveness of our proposed method.
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Statistical Methodology

Causal inference for censored data with continuous marks

This paper presents a framework for causal inference in the presence of censored data,where the failure time is marked by a continuous variable referred to as a mark.The mark is observed after treatment and is not meaningful when the failure time is censored. In addition, due to the continuous nature of the marks, observations at each given mark are sparse. These facts make the identification and estimation of causality a challenging task. To address these issues, we define a new mark-specific treatment effect within the potential outcomes framework and characterize its identifying conditions. We then propose a local smoothing estimator for the causal effects and establish its asymptotic properties. We further develop testing methods to evaluate whether the treatment has an effect on the failure time when controlling the values of the mark at certain points or within a defined interval, and develop a Gaussian approximation method to obtain the critical values. We evaluate our method using simulation studies as well as a real dataset from the Antibody Mediated Prevention trials.
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2601.01854 · 5 Jan · This paper is a replacement for the previous work titled "Causal inference for censored data with continuous marks." In the current version, we introduce a new definition of causal inference by considering the mark as a post-treatment variable. This approach offers a clearer causal interpretation compared to the previous version

Statistical Methodology

Confounder-robust causal discovery and inference in Perturb-seq using proxy and instrumental variables

Emerging single-cell technologies that combine CRISPR-based genetic perturbations with single-cell RNA sequencing, such as Perturb-seq, offer unprecedented opportunities to uncover cause-and-effect relationships among genes. Nonetheless, Perturb-seq experiments are subject to unobserved factors that, if not properly handled, can severely bias the inferred causal relationships between genes. These latent factors may arise not only from intrinsic molecular features of the regulatory elements, but also from unmeasured genes omitted due to cost-constrained experimental designs. Although methods for analyzing large-scale Perturb-seq data are rapidly maturing, approaches that explicitly account for such unobserved confounders when inferring causal gene networks are still lacking. Here, we propose a novel approach to accurately reconstruct causal gene networks from Perturb-seq data even when important confounders are missing. Our framework leverages proxy and instrumental variable strategies to exploit the rich information embedded in the perturbations, enabling unbiased estimation of the underlying directed acyclic graph (DAG) of gene expression. Applications to both comprehensive synthetic data and real CRISPR interference experiments in K562 cells demonstrate that our method outperforms baseline approaches that lack principled adjustments for unmeasured confounding, yielding more accurate and biologically relevant recovery of the true causal DAGs.
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Statistical Methodology

Spatio-temporal modeling and forecasting with Fourier neural operators

Spatio-temporal process models are often used for modeling dynamic physical and biological phenomena that evolve across space and time. These phenomena may exhibit environmental heterogeneity and complex interactions that are difficult to capture using traditional statistical process models such as Gaussian processes. This work proposes the use of Fourier neural operators (FNOs) for constructing statistical dynamical spatio-temporal models for forecasting. An FNO is a flexible mapping of functions that approximates the solution operator of possibly unknown linear or non-linear partial differential equations (PDEs) in a computationally efficient manner. It does so using samples of inputs and their respective outputs, and hence explicit knowledge of the underlying PDE is not required. Through simulations from a nonlinear PDE with known solution, we compare FNO forecasts to those from state-of-the-art statistical spatio-temporal-forecasting methods. Further, using sea surface temperature data over the Atlantic Ocean and precipitation data across Europe, we demonstrate the ability of FNO-based dynamic spatio-temporal (DST) statistical modeling to capture complex real-world spatio-temporal dependencies. Using collections of testing instances, we show that the FNO-DST forecasts are accurate with valid uncertainty quantification.
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All authors Pratik Nag, Andrew Zammit-Mangion, Sumeetpal Singh, Noel Cressie

Statistical Methodology

On regional treatment effect assessment using robust MAP priors

Bayesian dynamic borrowing has become an increasingly important tool for evaluating the consistency of regional treatment effects which is a key requirement for local regulatory approval of a new drug. It helps increase the precision of regional treatment effect estimate when regional and global data are similar, while guarding against potential bias when they differ. In practice, the two-component mixture prior, of which one mixture component utilizes the power prior to incorporate external data, is widely used. It allows convenient prior specification, analytical posterior computation, and fast evaluation of operating characteristics. Though the robust meta-analytical-predictive (MAP) prior is broadly used with multiple external data sources, it remains underutilized for regional treatment effect assessment (typically only one external data source is available) due to its inherit complexity in prior specification and posterior computation. In this article, we illustrate the applicability of the robust MAP prior in the regional treatment effect assessment by developing a closed-form approximation for its posterior distribution while leveraging its relationship with the power prior. The proposed methodology substantially reduces the computational burden of identifying prior parameters for desired operating characteristics. Moreover, we have demonstrated that the MAP prior is an attractive choice to construct the informative component of the mixture prior compared to the power prior. The advantage can be explained through a Bayesian hypothesis testing perspective. Using a real-world example, we illustrate how our proposed method enables efficient and transparent development of a Bayesian dynamic borrowing design to show regional consistency.
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Statistics Theory

Pathwise Representation of the Smoothing Distribution in Continuous-Time Linear Gaussian Models

We study the filtering and smoothing problem for continuous-time linear Gaussian systems. While classical approaches such as the Kalman-Bucy filter and the Rauch-Tung-Striebel (RTS) smoother provide recursive formulas for the conditional mean and covariance, we present a pathwise perspective that characterizes the smoothing error dynamics as an Ornstein-Uhlenbeck process. As an application, we show that standard filtering and smoothing equations can be uniformly derived as corollaries of our main theorem. In particular, we provide the first mathematically rigorous derivation of the Bryson-Frazier smoother in the continuous-time setting. Beyond offering a more transparent understanding of the smoothing distribution, our formulation enables pathwise sampling from it, which facilitates Monte Carlo methods for evaluating nonlinear functionals.
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Machine Learning (Statistics)

Sparse Convex Biclustering

Biclustering is an essential unsupervised machine learning technique for simultaneously clustering rows and columns of a data matrix, with widespread applications in genomics, transcriptomics, and other high-dimensional omics data. Despite its importance, existing biclustering methods struggle to meet the demands of modern large-scale datasets. The challenges stem from the accumulation of noise in high-dimensional features, the limitations of non-convex optimization formulations, and the computational complexity of identifying meaningful biclusters. These issues often result in reduced accuracy and stability as the size of the dataset increases. To overcome these challenges, we propose Sparse Convex Biclustering (SpaCoBi), a novel method that penalizes noise during the biclustering process to improve both accuracy and robustness. By adopting a convex optimization framework and introducing a stability-based tuning criterion, SpaCoBi achieves an optimal balance between cluster fidelity and sparsity. Comprehensive numerical studies, including simulations and an application to mouse olfactory bulb data, demonstrate that SpaCoBi significantly outperforms state-of-the-art methods in accuracy. These results highlight SpaCoBi as a robust and efficient solution for biclustering in high-dimensional and large-scale datasets.
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All authors Jiakun Jiang, Dewei Xiang, Chenliang Gu, Wei Liu, Binhuan Wang

Statistical Methodology

Varying-coefficient mixture of experts model for dynamic heterogeneous populations: application to mouse cortical development

As cells differentiate, gene-gene associations may change. Because the composition of cell subtypes also shifts with development, it is challenging to establish whether those changes reflect real changes in gene regulation within one or more subpopulations or a spurious one due to the shifting composition. Only formal inference can separate them. We propose a Varying-Coefficient Mixture-of-Experts (VCMoE) model in which the coefficients of both the gating functions and the expert components vary smoothly with the index variable, so that a subgroup-specific association can be inferred without being confounded by the concurrent shift in subgroup composition. We develop a label-consistent EM algorithm and establish the identifiability and asymptotic theory that make the resulting inference valid. These guarantees support simultaneous confidence bands, constructed using asymptotic and bootstrap methods, together with a generalized likelihood ratio test for constant coefficient functions. Simulations demonstrate accurate estimation and satisfactory coverage. Applied to single-nucleus RNA-sequencing data from embryonic mouse cortex, VCMoE finds that the repression of Bcl11b by Satb2 within the upper layer is not yet in place when those neurons first appear and becomes established over the course of differentiation, a dynamic that an ordinary mixture-of-experts model neglected. A package for implementing the method is available.
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Sunday 4 January

Statistical Methodology

Bayesian mortality forecasting with a Conway–Maxwell–Poisson specification

This paper presents a novel approach to stochastic mortality modelling by using the Conway–Maxwell–Poisson (CMP) distribution to model death counts. Unlike standard Poisson or negative binomial distributions, the CMP is a more adaptable choice because it can account for different levels of variability in the data, a feature known as dispersion. Specifically, it can handle data that are underdispersed (less variable than expected), equidispersed (as variable as expected), and overdispersed (more variable than expected). We develop a Bayesian formulation that treats the dispersion level as an unknown parameter, using a Gamma prior to enable a robust and coherent integration of the parameter, process, and distributional uncertainty. The model is calibrated using Markov chain Monte Carlo (MCMC) methods, with model performance evaluated using standard statistical criteria such as residual analysis and scoring rules. An empirical study using England and Wales male mortality data shows that our CMP-based models provide a better fit for both existing data and future predictions compared to traditional Poisson and negative binomial models, particularly when the data exhibit overdispersion. Finally, we conduct a sensitivity analysis with respect to prior specification to assess robustness.
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Machine Learning (Statistics)

Simplex Deep Linear Discriminant Analysis

We revisit Deep Linear Discriminant Analysis (Deep LDA) from a likelihood-based perspective. While classical LDA is a simple Gaussian model with linear decision boundaries, attaching an LDA head to a neural encoder raises the question of how to train the resulting deep classifier by maximum likelihood estimation (MLE). We first show that end-to-end MLE training of an unconstrained Deep LDA model ignores discrimination: when both the LDA parameters and the encoder parameters are learned jointly, the likelihood admits a degenerate solution in which some of the class clusters may heavily overlap or even collapse, and classification performance deteriorates. Batchwise moment re-estimation of the LDA parameters does not remove this failure mode. We then propose a constrained Deep LDA formulation that fixes the class means to the vertices of a regular simplex in the latent space and restricts the shared covariance to be spherical, leaving only the priors and a single variance parameter to be learned along with the encoder. Under these geometric constraints, MLE becomes stable and yields well-separated class clusters in the latent space. On images (Fashion-MNIST, CIFAR-10, CIFAR-100) and texts (AG News, CLINC150), the resulting Deep LDA models achieve accuracy competitive with softmax baselines while offering a simple, interpretable latent geometry that is clearly visible in two-dimensional projections.
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Statistical Methodology

Predictive Assessment and Comparison of Bayesian Survival Models for Cancer Recurrence

Complex data features, such as unmodelled censored event times and variables with time-dependent effects, are common in cancer recurrence studies and pose challenges for Bayesian survival modelling. Current methodologies for predictive model checking and comparison often fail to adequately address these features. This paper bridges that gap by introducing new, targeted recommendations for predictive assessment and comparison of Bayesian survival models. Our recommendations cover a variety of different scenarios and models. Accompanying code together with our implementations to open source software help in replicating the results and applying our recommendations in practice.
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Statistical Methodology

Wasserstein Distributionally Robust Rare-Event Simulation

Standard rare-event simulation techniques require exact distributional specifications, which limits their effectiveness in the presence of distributional uncertainty. To address this, we develop a novel framework for estimating rare-event probabilities subject to such distributional model risk. Specifically, we focus on computing worst-case rare-event probabilities, defined as a distributionally robust bound against a Wasserstein ambiguity set centered at a specific nominal distribution. By exploiting a dual characterization of this bound, we propose Distributionally Robust Importance Sampling (DRIS), a computationally tractable methodology designed to substantially reduce the variance associated with estimating the dual components. The proposed method is simple to implement and requires low sampling costs. Most importantly, it achieves vanishing relative error, the strongest efficiency guarantee that is notoriously difficult to establish in rare-event simulation. Our numerical studies confirm the superior performance of DRIS against existing benchmarks.
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Machine Learning (Statistics)

Deep Linear Discriminant Analysis Revisited

We show that for unconstrained Deep Linear Discriminant Analysis (LDA) classifiers, maximum-likelihood training admits pathological solutions in which class means drift together, covariances collapse, and the learned representation becomes almost non-discriminative. Conversely, cross-entropy training yields excellent accuracy but decouples the head from the underlying generative model, leading to highly inconsistent parameter estimates. To reconcile generative structure with discriminative performance, we introduce the Discriminative Negative Log-Likelihood (DNLL) loss, which augments the LDA log-likelihood with a simple penalty on the mixture density. DNLL can be interpreted as standard LDA NLL plus a term that explicitly discourages regions where several classes are simultaneously likely. Deep LDA trained with DNLL produces clean, well-separated latent spaces, matches the test accuracy of softmax classifiers on synthetic data and standard image benchmarks, and yields substantially better calibrated predictive probabilities, restoring a coherent probabilistic interpretation to deep discriminant models.
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All authors Maxat Tezekbayev, Rustem Takhanov, Arman Bolatov, Zhenisbek Assylbekov

Statistical Computation

grangersearch: An R Package for Exhaustive Granger Causality Testing with Tidyverse Integration

This paper introduces grangersearch, an R package for performing exhaustive Granger causality searches on multiple time series. The package provides: (1) exhaustive pairwise search across multiple variables, (2) automatic lag order optimization with visualization, (3) tidyverse-compatible syntax with pipe operators and non-standard evaluation, and (4) integration with the broom ecosystem through tidy() and glance() methods. The package wraps the vars infrastructure while providing a simple interface for exploratory causal analysis. We describe the statistical methodology, demonstrate the package through worked examples, and discuss practical considerations for applied researchers.
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Machine Learning (Statistics)

Variance-Reduced Diffusion Sampling via Target Score Identity

We study variance reduction for score estimation and diffusion-based sampling in settings where the clean (target) score is available or can be approximated. Starting from the Target Score Identity (TSI), which expresses the noisy marginal score as a conditional expectation of the target score under the forward diffusion, we develop: (i) a plug-and-play nonparametric self-normalized importance sampling estimator compatible with standard reverse-time solvers, (ii) a variance-minimizing state- and time-dependent blending rule between Tweedie-type and TSI estimators together with an anti-correlation analysis, (iii) a data-only extension based on locally fitted proxy scores, and (iv) a likelihood-tilting extension to Bayesian inverse problems. We also propose a Critic–Gate distillation scheme that amortizes the state-dependent blending coefficient into a neural gate. Experiments on synthetic targets and PDE-governed inverse problems demonstrate improved sample quality for a fixed simulation budget.
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Statistical Methodology

Cubic lower record-based transmuted family of distributions: Theory, Estimation, Applications

In this study, a family of distributions called cubic lower record-based transmuted is provided. A special case of this family is proposed as an alternative exponential distribution. Several statistical properties are explored. We utilize nine different methods to estimate the parameters of the suggested distribution. In order to compare the performances of these methods, we consider a comprehensive Monte-Carlo simulation study. As a result of simulation study, we conclude that minimum absolute distance estimator is a valuable alternative to maximum likelihood estimator. Then, we carried out two real-world data examples to evaluate the fits of introduced distribution as well as its potential competitor ones. The findings of real-world data analysis show that the best-fitting distribution for both datasets is our model.
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Statistical Methodology

Reduced-Rank Network Autoregression with Grouped Edge Effects

We propose the Edge-Grouped Reduced-Rank Network Autoregressive model (Edge-Grouped RRNAR) for multivariate time series observed over a network. The model allows transmission effects to vary across prespecified and economically interpretable groups of edges, while using a low-rank structure to capture cross-variable dynamics. This structure separates where network transmission occurs from which variables transmit and respond. We develop a topology-aware and block-specific scaled gradient descent algorithm with a convex low-rank initialization, and establish its local linear convergence and non-asymptotic estimation rates. We further derive asymptotic normality for the estimated transition matrix and normalized grouped network coefficients, enabling Wald tests for network relevance and edge-group homogeneity. Simulations demonstrate the finite-sample performance of the proposed estimation and inference procedures. An application to quarterly U.S. industry data linked by the production network reveals distinct predictive transmission intensities across economically defined edge groups, identifies interpretable real-activity and price-cost channels, and improves forecasting relative to standard network and matrix autoregressive models.
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All authors Qi Lyu, Xiaoyu Zhang, Guodong Li, Di Wang

Machine Learning (Statistics) · Cross-listed from math.OC

Multiscale replay: A robust algorithm for stochastic variational inequalities with a Markovian buffer

We introduce the Multiscale Experience Replay (MER) algorithm for solving a class of stochastic variational inequalities (VIs) in settings where samples are generated from a Markov chain and we have access to a memory buffer to store them. Rather than uniformly sampling from the buffer, MER utilizes a multi-scale sampling scheme to emulate the behavior of VI algorithms designed for independent and identically distributed samples, overcoming bias in the de facto serial scheme and thereby accelerating convergence. Notably, unlike standard sample-skipping variants of serial algorithms, MER is robust in that it achieves this acceleration in iteration complexity whenever possible, and without requiring knowledge of the mixing time of the Markov chain. We also discuss applications of MER, particularly in policy evaluation with temporal difference learning and in training generalized linear models with dependent data.
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Machine Learning (Statistics) · Cross-listed from nlin.PS

On the Practical Estimation and Interpretation of Rényi Transfer Entropy

Rényi transfer entropy (RTE) is a generalization of classical transfer entropy that replaces Shannon's entropy with Rényi's information measure. This, in turn, introduces a new tunable parameter $\alpha$, which accounts for sensitivity to low- or high-probability events. Although RTE shows strong potential for analyzing causal relations in complex, non-Gaussian systems, its practical use is limited, primarily due to challenges related to its accurate estimation and interpretation. These difficulties are especially pronounced when working with finite, high-dimensional, or heterogeneous datasets. In this paper, we systematically study the performance of a k-nearest neighbor estimator for both Rényi entropy (RE) and RTE using various synthetic data sets with clear cause-and-effect relationships inherent to their construction. We test the estimator across a broad range of parameters, including sample size, dimensionality, memory length, and Rényi order $\alpha$. In particular, we apply the estimator to a set of simulated processes with increasing structural complexity, ranging from linear dynamics to nonlinear systems with multi-source couplings. To address interpretational challenges arising from potentially negative RE and RTE values, we introduce three reliability conditions and formulate practical guidelines for tuning the estimator parameters. We show that when the reliability conditions are met and the parameters are calibrated accordingly, the resulting effective RTE estimates accurately capture directional information flow across a broad range of scenarios. Results obtained show that the explanatory power of RTE depends sensitively on the choice of the Rényi parameter $\alpha$. This highlights the usefulness of the RTE framework for identifying the drivers of extreme behavior in complex systems.
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All authors Zlata Tabachová, Petr Jizba, Hynek Lavička, Milan Paluš

Machine Learning (Statistics)

Modeling Information Blackouts in Missing Not-At-Random Time Series Data

Traffic forecasting systems rely on fixed sensor networks that frequently exhibit contiguous blackouts. Such outages are usually treated as ignorable missingness, although dropout can depend on unobserved traffic conditions. We study this possibility with an MNAR-aware latent state-space model that combines linear traffic dynamics with a Bernoulli missingness channel whose probability depends on the latent state. Inference uses an Extended Kalman Filter (EKF) followed by Rauch-Tung-Striebel (RTS) smoothing, and parameters are learned by approximate EM. We evaluate Seattle using a leakage-free, month-balanced set of 300 unique all-horizon-aligned blackout windows. On this benchmark, MAR-LDS attains 4.264 mph pooled imputation RMSE and MNAR-LDS improves it to 4.177 (difference -0.086); the detector-cluster bootstrap 95% interval is [-0.182,-0.002]. A causal one-step predicted latent representation raises missingness ROC-AUC from 0.685 using observed-only features to 0.784. We further test whether this compact probabilistic model remains competitive with substantially larger neural time-series architectures under the identical masked-imputation protocol. MNAR-LDS ranks second in pooled RMSE and outperforms 8 of 9 evaluated neural architectures; it is within 1.22% of the best neural result, with no statistically resolved difference under detector-cluster bootstrap, while achieving lower P95 error, lower long-blackout RMSE, and orders of magnitude fewer stored scalar entries. MNAR roughly doubles end-to-end training time relative to MAR and increases EKF+RTS inference time by 41%, making the accuracy-complexity-cost tradeoff explicit. Controlled state-dependent blackouts further show larger gains when dropout is genuinely informative, including a 6.34% reduction in 30-minute forecast RMSE relative to MAR.
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Statistics Theory

Double Machine Learning of Continuous Treatment Effects with Additive Instrumental Variables

Estimating causal effects of continuous treatments is a common problem in practice, for example, in studying average dose-response functions. Classical analyses typically assume that all confounders are fully observed, whereas in real-world applications, unmeasured confounding often persists. In this article, we propose a novel framework for the identification of average dose-response functions using instrumental variables, thereby mitigating bias induced by unobserved confounders. We introduce the concept of a uniform regular weighting function and consider covering the treatment space with a finite collection of open sets. On each of these sets, such a weighting function exists, allowing us to identify the average dose-response function locally within the corresponding region. For estimation, we propose an augmented inverse probability weighted score for continuous treatments with instrumental variables under a debiased machine learning framework, and provide practical guidance for adaptively constructing regular weighting functions from the data. We also propose a falsification test for the additive instrumental variable condition and develop a testing procedure for assessing the validity of regular weighting functions. We further establish the asymptotic properties of the resulting estimators based on kernel regression or empirical risk minimization as well as the theoretical validity of the proposed testing procedures. Finally, we conduct both simulation and empirical studies to assess the finite-sample performance of the proposed methods.
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Machine Learning (Statistics)

Fast Gibbs Sampling on Bayesian Hidden Markov Model with Missing Observations

The Hidden Markov Model (HMM) is a widely-used statistical model for handling sequential data. However, the presence of missing observations in real-world datasets often complicates the application of the model. The EM algorithm and Gibbs samplers can be used to estimate the model, yet suffering from various problems including non-convexity, high computational complexity and slow mixing. In this paper, we propose a collapsed Gibbs sampler that efficiently samples from HMMs' posterior by integrating out both the missing observations and the corresponding latent states. The proposed sampler is fast due to its three advantages. First, it achieves an estimation accuracy that is comparable to existing methods. Second, it can produce a larger Effective Sample Size (ESS) per iteration, which can be justified theoretically and numerically. Third, when the number of missing entries is large, the sampler has a significant smaller computational complexity per iteration compared to other methods, thus is faster computationally. In summary, the proposed sampling algorithm is fast both computationally and theoretically and is particularly advantageous when there are a lot of missing entries. Finally, empirical evaluations based on numerical simulations and real data analysis demonstrate that the proposed algorithm consistently outperforms existing algorithms in terms of time complexity and sampling efficiency (measured in ESS).
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Statistical Methodology

Personalizing black-box models for nonparametric regression with minimax optimality

Recent advances in large-scale models, including deep neural networks and large language models, have substantially improved performance across a wide range of learning tasks. The widespread availability of such pre-trained models creates new opportunities for data-efficient statistical learning, provided they can be effectively integrated into downstream tasks. Motivated by this setting, we study few-shot personalization, where a pre-trained black-box model is adapted to a target domain using a limited number of samples. We develop a theoretical framework for few-shot personalization in nonparametric regression and propose algorithms that can incorporate a black-box pre-trained model into the regression procedure. We establish the minimax optimal rate for the personalization problem and show that the proposed method attains this rate. Our results clarify the statistical benefits of leveraging pre-trained models under sample scarcity and provide robustness guarantees when the pre-trained model is not informative. We illustrate the finite-sample performance of the methods through simulations and an application to the California housing dataset with several pre-trained models.
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Statistical Computation

Hamiltonian Monte Carlo for (Physics) Dummies

Sampling-based inference has seen a surge of interest in recent years. Hamiltonian Monte Carlo (HMC) has emerged as a powerful algorithm that leverages concepts from Hamiltonian dynamics to efficiently explore complex target distributions. Variants of HMC are available in popular software packages, enabling off-the-shelf implementations that have greatly benefited the statistics and machine learning communities. At the same time, the availability of such black-box implementations has made it challenging for users to understand the inner workings of HMC, especially when they are unfamiliar with the underlying physical principles. We provide a pedagogical overview of HMC that aims to bridge the gap between its theoretical foundations and practical applicability. This review article seeks to make HMC more accessible to applied researchers by highlighting its advantages, limitations, and role in enabling scalable and exact Bayesian inference for complex models.
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Statistical Methodology

Unsupervised dense random survival forests identify interpretable patient profiles with heterogeneous treatment benefit

Precision oncology aims to prescribe the optimal cancer treatment to the right patients, maximizing therapeutic benefits. However, identifying patient subgroups that may benefit more from experimental cancer treatments based on randomized clinical trials presents a significant analytical challenge. To address this, we introduce a novel unsupervised machine learning approach based on very dense random survival forests (up to 100,000 trees), equipped with a new splitting rule that explicitly targets treatment-effect heterogeneity. This method is robust, interpretable, and effectively identifies responsive subgroups. Extensive simulations confirm its ability to detect heterogeneous patient responses and distinguish between datasets with and without heterogeneity, while maintaining a stringent Type I error rate of 1%. We further validate its performance using Phase III randomized clinical trial datasets, demonstrating significant patient heterogeneity in treatment response based on baseline characteristics.
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All authors Xingyu Li, Qing Liu, Tony Jiang, Hong Amy Xia, Peng Wei, Brian P. Hobbs

Statistics Theory

SGD with Dependent Data: Optimal Estimation, Regret, and Inference

This work investigates the performance of the final iterate produced by stochastic gradient descent (SGD) under temporally dependent data. We consider two complementary sources of dependence: $(i)$ martingale-type dependence in both the covariate and noise processes, which accommodates non-stationary and non-mixing time series data, and $(ii)$ dependence induced by sequential decision making. Our formulation runs in parallel with classical notions of (local) stationarity and strong mixing, while neither framework fully subsumes the other. Remarkably, SGD is shown to automatically accommodate both independent and dependent information under a broad class of stepsize schedules and exploration rate schemes. Non-asymptotically, we show that SGD simultaneously achieves statistically optimal estimation error and regret, extending and improving existing results. In particular, our tail bounds remain sharp even for potentially infinite horizon $T=+\infty$. Asymptotically, the SGD iterates converge to a Gaussian distribution with only an $O_{\PP}(1/\sqrt{t})$ remainder, demonstrating that the supposed estimation-regret trade-off claimed in prior work can in fact be avoided. We further propose a new “conic” approximation of the decision region that allows the covariates to have unbounded support. For online sparse regression, we develop a new SGD-based algorithm that uses only $d$ units of storage and requires $O(d)$ flops per iteration, achieving the long term statistical optimality. Intuitively, each incoming observation contributes to estimation accuracy, while aggregated summary statistics guide support recovery.
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Machine Learning (Statistics) · Cross-listed from cs.CL

Investigating the Multilingual Calibration Effects of Language Model Instruction-Tuning

Ensuring that deep learning models are well-calibrated in terms of their predictive uncertainty is essential in maintaining their trustworthiness and reliability, yet despite increasing advances in foundation model research, the relationship between such large language models (LLMs) and their calibration remains an open area of research. In this work, we look at a critical gap in the calibration of LLMs within multilingual settings, in an attempt to better understand how the data scarcity can potentially lead to different calibration effects and how commonly used techniques can apply in these settings. Our analysis on two multilingual benchmarks, over 29 and 42 languages respectively, reveals that even in low-resource languages, model confidence can increase significantly after instruction-tuning on high-resource language SFT datasets. However, improvements in accuracy are marginal or non-existent, resulting in mis-calibration, highlighting a critical shortcoming of standard SFT for multilingual languages. Furthermore, we observe that the use of label smoothing to be a reasonable method alleviate this concern, again without any need for low-resource SFT data, maintaining better calibration across all languages. Overall, this highlights the importance of multilingual considerations for both training and tuning LLMs in order to improve their reliability and fairness in downstream use.
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All authors Jerry Huang, Peng Lu, Qiuhao Zeng, Yusuke Iwasawa, Yutaka Matsuo, Sarath Chandar, Edison Marrese-Taylor, Irene Li

Statistics Applications

Errors-in-variables regression for dependent data with estimated error covariance matrix: To prewhiten or not?

We consider statistical inference for errors-in-variables regression models with dependent observations under the high dimensionality of the error covariance matrix. It is tempting to prewhiten the model and data that had led to efficient weighted least squares estimation in the presence of the measurement errors, as being practised in the optimal fingerprinting approach in climate change studies. However, it is unclear to what extent the prewhitened estimator can improve the estimation efficiency of the unprewhitened estimator for errors-in-variables regression. We compare the prewhitening and unprewhitening estimators in terms of their estimation efficiency and computational cost. It shows that while the prewhitening operation does not necessarily improve the estimation efficiency of its unprewhitening counterpart, it demands more on the ensemble size needed in the error-covariance matrix estimation to ensure the asymptotic normality, and hence it would requires much more computationally resource.
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Statistics Theory

Uniform Asymptotic Theory for Local Likelihood Estimation of Covariate-Dependent Copula Parameters

Conditional copula models allow dependence structures to vary with observed covariates while preserving a separation between marginal behavior and association. We study the uniform asymptotic behavior of kernel-weighted local likelihood estimators for smoothly varying copula parameters in multivariate conditional copula models. Using a local polynomial approximation of a suitably transformed calibration function, we establish uniform convergence rates over compact covariate sets for the local log-likelihood, its score, and its Hessian. These results yield uniform consistency of the local maximum likelihood estimator and of the induced copula parameter function. The analysis is based on empirical process techniques for kernel-indexed classes with shrinking neighborhoods and polynomial entropy bounds, providing theoretical support for global consistency and stable local optimization in covariate-dependent copula models.
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Statistical Methodology

Adaptive Kernel Regression for Constrained Route Alignment: Theory and Iterative Data Sharpening

Route alignment design in surveying and transportation engineering frequently involves fixed waypoint constraints, where a path must precisely traverse specific coordinates. While existing literature primarily relies on geometric optimization or control-theoretic spline frameworks, there is a lack of systematic statistical modeling approaches that balance global smoothness with exact point adherence. This paper proposes an Adaptive Nadaraya-Watson (ANW) kernel regression estimator designed to address the fixed waypoint problem. By incorporating waypoint-specific weight tuning parameters, the ANW estimator decouples global smoothing from local constraint satisfaction, avoiding the "jagged" artifacts common in naive local bandwidth-shrinking strategies. To further enhance estimation accuracy, we develop an iterative data sharpening algorithm that systematically reduces bias while maintaining the stability of the kernel framework. We establish the theoretical foundation for the ANW estimator by deriving its asymptotic bias and variance and proving its convergence properties under the internal constraint model. Numerical case studies in 1D and 2D trajectory planning demonstrate that the method effectively balances root mean square error (RMSE) and curvature smoothness. Finally, we validate the practical utility of the framework through empirical applications to railway and highway route planning. In sum, this work provides a stable, theoretically grounded, and computationally efficient solution for complex, constrained alignment design problems.
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All authors Shiyin Du, Yiting Chen, Wenzhi Yang, Qiong Li, Xiaoping Shi