Statistics Theory · Cross-listed from cs.LG
Hypothesis Testing for Generalized Thurstone Models
Anuran Makur and Japneet Singh
In this work, we develop a hypothesis testing framework to determine whether pairwise comparison data is generated by an underlying generalized Thurstone model $\mathcal{T}_F$ for a given choice function $F$. While prior work has predominantly focused on parameter estimation and uncertainty quantification for such models, we address the fundamental problem of minimax hypothesis testing for $\mathcal{T}_F$ models. We formulate this testing problem by introducing a notion of separation distance between general pairwise comparison models and the class of $\mathcal{T}_F$ models. We then derive upper and lower bounds on the critical threshold for testing that depend on the
topology of the observation graph. For the special case of complete observation graphs, this threshold scales as $\Theta((nk)^{-1/2})$, where $n$ is the number of
agents and $k$ is the number of comparisons per pair. Furthermore, we propose a hypothesis test based on our separation distance, construct confidence intervals, establish time-uniform bounds on the probabilities of type I and II errors using reverse martingale techniques, and derive minimax lower bounds using information-theoretic methods. Finally, we validate our results through experiments on synthetic and real-world
datasets.
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Statistical Methodology
Correcting for sampling variability in maximum likelihood-based one-sample log-rank tests
Moritz Fabian Danzer and Rene Schmidt
Single-arm studies in the early development phases of new treatments are not uncommon in the context of rare diseases or in paediatrics. If an assessment of efficacy is to be made at the end of such a study, the observed endpoints can be compared with reference values that can be derived from historical data. For a time-to-event endpoint, a statistical comparison with a reference curve can be made using the one-sample log-rank test. In order to ensure the interpretability of the results of this test, the role of the reference curve is crucial. This quantity is often estimated from a historical control group using a parametric procedure. Hence, it should be noted that it is subject to estimation uncertainty. However, this aspect is not taken into account in the one-sample log-rank test statistic. We analyse this estimation uncertainty for the common situation that the reference curve is estimated parametrically using the maximum likelihood method, and indicate how the variance estimation of the one-sample log-rank test can be adapted in order to take this variability into account. The resulting test procedures are illustrated using a data example and analysed in more detail using simulations, particularly in comparison with established two-sample methods.
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Statistics Theory
Spectral Joint Subspace Estimation for Heterogeneous Multi-View Data: Geometry and Reweighting
Jingyang Li and Zhongyuan Lyu
Many modern
datasets consist of multiple related
matrices measured on a common set of units, with the goal of recovering a shared low-dimensional subspace. The Angle-based Joint and Individual Variation Explained (AJIVE) framework addresses this problem through equal-weight aggregation, which can be suboptimal when views exhibit statistical heterogeneity in signal-to-noise ratios and dimensions, as well as structural heterogeneity from individual components. For equal-weight AJIVE, we show that the previously identified “non-diminishing” error barrier is geometry dependent: under near-orthogonal deterministic loading orientations, the second-order term is reduced, whereas under sign-symmetric random loadings, it is centered and averages out, yielding a $K^{-1/2}$-type rate without iterative refinement. Under a majority sign-
alignment condition in rank-one setting, a bias at the squared single-view perturbation scale can persist. For general weights, we establish error bounds that disentangle the two layers of heterogeneity, and propose HeteroJIVE, the weighted AJIVE
estimator using an explicit weight that is optimal whenever its identifiability gap is constant. We also provide a data-driven plug-in implementation of HeteroJIVE, together with an optional geometry-adaptive extension of this data-driven procedure. Simulations and analyses of multi-omics and image data illustrate the practical benefits of HeteroJIVE.
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Statistics Applications · Cross-listed from physics.geo-ph
Leveraging generative adversarial networks with spatially adaptive denormalization for multivariate stochastic seismic data inversion
Roberto Miele and Leonardo Azevedo
Probabilistic seismic inverse modeling often requires the prediction of both spatially correlated geological heterogeneities (e.g., facies) and continuous parameters (e.g., rock and elastic properties). Generative
adversarial networks (GANs) provide an efficient training-image-based simulation framework capable of reproducing complex geological models with high accuracy and comparably low generative cost. However, their application in
stochastic geophysical inversion for multivariate property prediction is limited, as representing multiple coupled properties requires large and unstable networks with high
memory and training demands. A more recent variant of GANs with spatially adaptive denormalization (SPADE-GAN) enables the direct conditioning of facies spatial distributions on local probability maps. Leveraging on such features, an iterative geostatistical inversion
algorithm is proposed, SPADE-GANInv, integrating a pre-trained SPADE-GAN with geostatistical simulation, for the prediction of facies and multiple correlated continuous properties from seismic data. The SPADE-GAN is trained to reproduce realistic facies geometries, while sequential
stochastic co-simulation predicts the spatial variability of the facies-dependent continuous properties. At each iteration, a set of subsurface realizations is generated and used to compute synthetic seismic data. The realizations providing the highest similarity coefficient to the observed data are used to update the subsurface probability models in the next iteration. The method is demonstrated on both 2-D synthetic scenarios and field data, targeting the prediction of facies, porosity, and acoustic impedance from full-stack seismic data. Results show that the
algorithm enables accurate multivariate prediction, mitigates the impact of biased prior data, and accommodates additional local conditioning such as well logs.
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Statistical Methodology · Cross-listed from cs.LG
Adaptive Decentralized Federated Learning for Robust Optimization
Shuyuan Wu, Feifei Wang, Yuan Gao et al. (+2 more)
In decentralized
federated learning (DFL), the presence of abnormal clients, often caused by noisy or poisoned data, can significantly disrupt the learning process and degrade the overall robustness of the model. Previous methods on this issue often require a sufficiently large number of normal neighboring clients or prior knowledge of reliable clients, which reduces the practical applicability of DFL. To address these limitations, we develop here a novel adaptive DFL (aDFL) approach for robust estimation. The key idea is to adaptively adjust the learning rates of clients. By assigning smaller rates to suspicious clients and larger rates to normal clients, aDFL mitigates the negative impact of abnormal clients on the global model in a fully adaptive way. Our theory does not put any stringent conditions on neighboring nodes and requires no prior knowledge. A rigorous convergence analysis is provided to guarantee the oracle property of aDFL. Extensive numerical experiments demonstrate the superior performance of the aDFL method.
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All authors Shuyuan Wu, Feifei Wang, Yuan Gao, Rui Wang, Hansheng Wang
Statistical Methodology
Analysis of hypothesis tests for multiple uncertain finite populations with applications to normal uncertainty distributions
Fan Zhang and Zhiming Li
Hypothesis test plays a key role in uncertain statistics based on uncertain measure. This paper extends the parametric hypothesis of a single uncertain population to multiple cases, thereby addressing a broader range of scenarios. First, an uncertain family-wise error rate is defined to control the overall error in simultaneous testing. Subsequently, a hypothesis test of two uncertain populations is proposed, and the rejection region for the null hypothesis at a significance level is derived, laying the foundation for further analysis. Building on this, a homogeneity test for multiple populations is developed to assess whether the unknown population parameters differ significantly. When there is no significant difference in these parameters among finite populations or within a subset, a common test is used to determine whether they equal a fixed constant. Finally, homogeneity and common tests for normal uncertain populations with means and standard deviations are conducted under three cases: only means, only standard deviations, or both are unknown. Numerical simulations demonstrate the feasibility and accuracy of the proposed methods, and a real example is provided to illustrate their effectiveness.
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Machine Learning (Statistics)
Revisiting Theory of Contrastive Learning for Domain Generalization
Ali Alvandi and Mina Rezaei
Contrastive learning is among the most popular and powerful approaches for self-supervised representation learning, where the goal is to map semantically similar samples close together while separating dissimilar ones in the latent space. Existing theoretical methods assume that downstream task classes are drawn from the same latent class distribution used during the pretraining phase. However, in real-world settings, downstream tasks may not only exhibit distributional shifts within the same label space but also introduce new or broader label spaces, leading to domain generalization challenges. In this work, we introduce novel generalization bounds that explicitly account for both types of mismatch: domain shift and domain generalization. Specifically, we analyze scenarios where downstream tasks either (i) draw classes from the same latent class space but with shifted distributions, or (ii) involve new label spaces beyond those seen during pretraining. Our analysis reveals how the performance of contrastively learned representations depends on the statistical discrepancy between pretraining and downstream distributions. This extended perspective allows us to derive provable guarantees on the performance of learned representations on average classification tasks involving class distributions outside the pretraining latent class set.
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Machine Learning (Statistics) · Cross-listed from eess.SY
Tempering the Bayes Filter towards Improved Model-Based Estimation
Menno van Zutphen, Domagoj Herceg, Giannis Delimpaltadakis et al. (+1 more)
Model-based filtering is often carried out while subject to an imperfect model, as learning partially-observable
stochastic systems remains a challenge. Recent work on
Bayesian inference found that tempering the likelihood or full posterior of an imperfect model can improve predictive accuracy, as measured by expected negative log likelihood. In this paper, we develop the tempered Bayes filter, improving estimation performance through both of the aforementioned, and one newly introduced, modalities. The result admits a recursive implementation with a computational complexity no higher than that of the original Bayes filter. Our analysis reveals that – besides the well-known fact in the field of
Bayesian inference that likelihood tempering affects the balance between prior and likelihood – full-posterior tempering tunes the level of
entropy in the final belief distribution. We further find that a region of the tempering space can be understood as interpolating between the Bayes- and MAP filters, recovering these as special cases. Analytical results further establish conditions under which a tempered Bayes filter achieves improved predictive performance. Specializing the results to the linear Gaussian case, we obtain the tempered Kalman filter. In this context, we interpret how the parameters affect the Kalman state estimate and covariance propagation. Empirical results confirm that our method consistently improves predictive accuracy over the Bayes filter baseline.
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All authors Menno van Zutphen, Domagoj Herceg, Giannis Delimpaltadakis, Duarte J. Antunes
Statistics Applications · Cross-listed from physics.ao-ph
Q-triplet characterization of atmospheric time series at Antofagasta: A missing values problem
Hishan Farfán-Bachiloglu, Francisco A. Calderón and Darío G. Pérez
Located in northern Chile (23.7{\deg}S, 70.4{\deg}W), Antofagasta has an exceptionally arid and stable
climate characterized by minimal precipitation and consistent weather patterns. Nevertheless, despite these
climate conditions being meaningful for several research and practical applications, our understanding of weather dynamics remains limited. The available meteorological data from 1969 to 2016 is analogical, which presents a significant challenge to analyze because these records are riddled with missing values, some measurements were taken at irregular measuring intervals, making it an interesting puzzle to grasp the Antofagasta's
climate scenario. To overcome this issue, we present a comprehensive statistical analysis of atmospheric temperature, pressure, and humidity time series. Our analytical approach involves the q-triplet calculation method, serving as a powerful tool to identify distinctive behavior within systems under non-
equilibrium states. Our results suggest that, in general, the q-triplet values satisfy the condition $q_\text{sens}<1<q_\text{stat}<q_\text{rel}$, a pattern that has been observed in previous studies.
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Statistical Methodology
Implicit score-driven filters for time-varying parameter models
Rutger-Jan Lange, Bram van Os and Dick van Dijk
We propose an observation-driven modeling framework that allows model parameters to vary over time through an implicit score-driven (ISD) update. The ISD update maximizes the logarithmic observation density with respect to the parameter vector while penalizing the weighted L2 norm relative to a one-step-ahead predicted parameter. This yields an implicit
stochastic-gradient update. We show that the popular class of explicit score-driven (ESD) models arises when the observation log density is linearly approximated around the prediction. By preserving the full density, the ISD update extends the favorable local properties of the ESD update to a global setting. For log-concave observation densities, whether correctly specified or not, the ISD filter is stable for all learning rates, and its updates are contractive in mean squared error toward the (pseudo-)true parameter at every time step. We demonstrate the usefulness of ISD filters in simulations and empirical applications in finance and macroeconomics.
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Machine Learning (Statistics)
Laplace Approximation For Tensor Train Kernel Machines In System Identification
Albert Saiapin and Kim Batselier
To address the scalability limitations of Gaussian process (GP) regression, several approximation techniques have been proposed. One such method is based on tensor networks, which utilizes an exponential number of basis functions without incurring exponential computational cost. However, extending this model to a fully probabilistic formulation introduces several design challenges. In particular, for tensor train (TT) models, it is unclear which TT-core should be treated in a
Bayesian manner. We introduce a
Bayesian tensor train kernel machine that applies Laplace approximation to estimate the posterior distribution over a selected TT-core and employs variational inference (VI) for precision hyperparameters. Experiments show that core selection is largely independent of TT-ranks and feature structure, and that VI replaces cross-validation while offering up to 65x faster training. The method's effectiveness is demonstrated on an inverse dynamics problem.
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Machine Learning (Statistics) · Cross-listed from cs.CV
On the Problem of Consistent Anomalies in Zero-Shot Anomaly Detection
Tai Le-Gia
Zero-shot anomaly classification and
segmentation (AC/AS) aim to detect anomalous samples and regions without any training data, a capability increasingly crucial in industrial inspection and medical imaging. This dissertation aims to investigate the core challenges of zero-shot AC/AS and presents principled solutions rooted in theory and algorithmic design. We first formalize the problem of consistent anomalies, a failure mode in which recurring similar anomalies systematically bias distance-based methods. By analyzing the statistical and
geometric behavior of patch representations from pre-trained
Vision Transformers, we identify two key phenomena - similarity scaling and neighbor-burnout - that describe how relationships among normal patches change with and without consistent anomalies in settings characterized by highly similar objects. We then introduce CoDeGraph, a graph-based framework for filtering consistent anomalies built on the similarity scaling and neighbor-burnout phenomena. Through multi-stage graph construction, community detection, and structured refinement, CoDeGraph effectively suppresses the influence of consistent anomalies. Next, we extend this framework to 3D medical imaging by proposing a training-free, computationally efficient volumetric tokenization strategy for MRI data. This enables a genuinely zero-shot 3D anomaly detection pipeline and shows that volumetric anomaly
segmentation is achievable without any 3D training samples. Finally, we bridge batch-based and text-based zero-shot methods by demonstrating that CoDeGraph-derived pseudo-masks can supervise
prompt-driven
vision-
language models. Together, this dissertation provides theoretical understanding and practical solutions for the zero-shot AC/AS problem.
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Statistics Theory · Cross-listed from cond-mat.stat-mech
Mean First Passage Time of the Symmetric Noisy Voter Model with Arbitrary Initial and Boundary Conditions
Rytis Kazakevičius and Aleksejus Kononovicius
Models of imitation and herding behavior often underestimate the role of individualistic actions and assume symmetric boundary conditions. However, real-world systems (e.g., electoral processes) frequently involve asymmetric boundaries. In this study, we explore how arbitrarily placed boundary conditions influence the mean first passage time in the symmetric noisy voter model, and how individualistic behavior amplifies this asymmetry. We derive exact analytical expressions for mean first passage time that accommodate any initial condition and two types of boundary configurations: (i) both boundaries absorbing, and (ii) one absorbing and one reflective. In both scenarios, mean first passage time exhibits a clear asymmetry with respect to the initial condition, shaped by the boundary placement and the rate of independent transitions.
Symmetry in mean first passage time emerges only when absorbing boundaries are equidistant from the midpoint. Additionally, we show that Kramers' law holds in both configurations when the rate of independent transitions is large. Our analytical results are in excellent agreement with numerical simulations, reinforcing the robustness of our findings.
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Machine Learning (Statistics)
Bayesian Physics-Informed Neural Networks for Inverse Problems (BPINN-IP): Application in Infrared Image Processing
Ali Mohammad-Djafari, Ning Chu and Li Wang
Inverse problems arise across scientific and engineering domains, where the goal is to infer hidden parameters or physical fields from indirect and noisy observations. Classical approaches, such as variational regularization and
Bayesian inference, provide well established theoretical foundations for handling ill posedness. However, these methods often become computationally restrictive in high dimensional settings or when the forward model is governed by complex physics. Physics Informed Neural Networks (PINNs) have recently emerged as a promising framework for solving inverse problems by
embedding physical laws directly into the training process of neural networks. In this paper, we introduce a new perspective on the
Bayesian Physics Informed Neural Network (BPINN) framework, extending classical PINNs by explicitly incorporating training data generation, modeling and measurement uncertainties through
Bayesian prior modeling and doing inference with the posterior laws. Also, as we focus on the inverse problems, we call this method BPINN-IP, and we show that the standard PINN formulation naturally appears as its special case corresponding to the Maximum A Posteriori (MAP) estimate. This unified formulation allows simultaneous exploitation of physical constraints, prior knowledge, and data-driven inference, while enabling uncertainty quantification through posterior distributions. To demonstrate the effectiveness of the proposed framework, we consider inverse problems arising in infrared image processing, including deconvolution and super-resolution, and present results on both simulated and real industrial data.
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Statistical Computation · Cross-listed from q-bio.MN
Simulation and inference methods for non-Markovian stochastic biochemical reaction networks
Thomas P. Steele and David J. Warne
Stochastic models of reaction networks are widely used to capture intrinsic noise in complex systems in the life sciences. Typical formulations of these models are based on Markov processes for which there is extensive research on efficient simulation and inference. However, there are complex processes in biology, such as gene transcription and translation, that introduce history dependent dynamics requiring non-Markovian processes to accurately capture the
stochastic dynamics of the system. This greater realism comes with additional computational challenges for simulation and parameter inference. We develop efficient
stochastic simulation
algorithms for well-mixed non-Markovian
stochastic reaction networks with
stochastic delays that depend on system state and time. Our methods generalize the next reaction method and $\tau$-leaping method to support arbitrary inter-event time distributions while preserving computational scalability. We also introduce a coupling scheme to generate exact non-Markovian sample paths that are positively correlated to an approximate non-Markovian $\tau$-leaping sample path. This enables substantial computational gains for simulation and
Bayesian inference through multilevel Monte Carlo and multifidelity schemes. We demonstrate the effectiveness of our approach using several non-Markovian examples, showing substantial gains in both simulation accuracy and inference efficiency. These results extend the practical applicability of non-Markovian models in systems biology and beyond.
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Machine Learning (Statistics) · Cross-listed from math.OC
Safeguarded Stochastic Polyak Step Sizes for Non-smooth Optimization: Robust Performance Without Small (Sub)Gradients
Dimitris Oikonomou and Nicolas Loizou
The
stochastic Polyak step size (SPS) has proven to be a promising choice for
stochastic gradient descent (SGD), delivering competitive performance relative to state-of-the-art methods on smooth convex and non-convex optimization problems, including deep neural network training. However, extensions of this approach to non-smooth settings remain in their early stages, often relying on interpolation assumptions or requiring knowledge of the optimal solution. In this work, we propose a novel SPS variant, Safeguarded SPS (SPS$_{safe}$), for the
stochastic subgradient method, and provide rigorous convergence guarantees for non-smooth convex optimization with no need for strong assumptions. We further incorporate momentum into the update rule, yielding equally tight theoretical results. Comprehensive experiments on convex
benchmarks and deep neural networks corroborate our theory: the proposed step size achieves competitive performance to existing adaptive baselines and exhibits stable behavior across a wide range of problem settings. Finally, in the context of deep neural network training, the gradient norms under our step size do not collapse to (near) zero, indicating robustness to vanishing gradients.
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Statistics Applications
Leveraging ontologies to predict biological activity of chemicals across genes
Jennifer N. Kampe, David B. Dunson, Celeste K. Carberry et al. (+3 more)
High-throughput screening (HTS) is useful for evaluating chemicals for potential human health risks. However, given the extraordinarily large number of genes, assay endpoints, and chemicals of interest, available data are sparse, with dose-response curves missing for the vast majority of chemical-gene pairs. Although gene ontologies characterize similarity among genes with respect to known cellular functions and biological pathways, the sensitivity of various pathways to environmental contaminants remains unclear. We propose a novel Dose-Activity Response Tracking (DART) approach to predict the biological activity of chemicals across genes using information on chemical structural properties and gene ontologies within a
Bayesian factor model. Designed to provide toxicologists with a flexible tool applicable across diverse HTS assay platforms, DART reveals the latent processes driving dose-response behavior and predicts new activity profiles for chemical-gene pairs lacking experimental data. We demonstrate the performance of DART through simulation studies and an application to a vast new multi-experiment data set consisting of dose-response observations generated by the exposure of HepG2
cells to per- and polyfluoroalkyl substances (PFAS), where it provides actionable guidance for chemical prioritization and inference on the structural and functional mechanisms underlying assay activation.
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All authors Jennifer N. Kampe, David B. Dunson, Celeste K. Carberry, Julia E. Rager, Daniel Zilber, Kyle P. Messier
Machine Learning (Statistics) · Cross-listed from cs.LG
Training Energy-Based Models with Non-MCMC Samplers and Efficient Temperature Estimation
Kentaro Kubo and Hayato Goto
Efficient sampling from Boltzmann distributions over discrete variables is a fundamental operation in a wide range of applications. While fast non-MCMC samplers have recently emerged as promising alternatives to conventional MCMC methods, their practical use for probabilistic learning remains hindered by the difficulty of estimating the effective temperature of the generated samples. In this work, we begin by introducing Langevin simulated bifurcation (LSB), a Boltzmann sampler that enables fast and parallel sampling with accuracy comparable to sequential MCMC methods. To address the challenge of unknown effective temperature, we propose conditional expectation matching (CEM), an efficient estimation method applicable to energy-based models (EBMs) with exploitable conditional independence structures. Building on these components, we further develop a learning framework, termed sampler adaptive learning (SAL), which adaptively adjusts the model temperature to match that of the distribution induced by fast non-MCMC sampling. We demonstrate the effectiveness of LSB, CEM, and SAL on semi-restricted Boltzmann machines (SRBMs), a class of EBMs that are difficult to train using conventional approaches. LSB achieves orders-of-magnitude acceleration over Gibbs sampling while maintaining comparable or higher accuracy, and CEM enables accurate temperature estimation of the resulting distribution with negligible computational overhead. As a consequence, SAL enables efficient training of SRBMs and outperforms conventional Boltzmann machine learning methods on synthetic
spin-glass
datasets. In addition, the trained models achieve strong performance across multiple tasks. These results establish LSB as a fast and accurate Boltzmann sampler and provide key insights that enable practical applications of fast non-MCMC sampling methods via efficient temperature estimation with CEM.
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