Statistical Methodology
Valid Inference when Testing Violations of Parallel Trends for Difference-in-Differences
Jonas M. Mikhaeil and Christopher Harshaw
The difference-in-differences (DID) research design is a key identification strategy which allows researchers to estimate causal effects under the parallel trends assumption. While the parallel trends assumption is counterfactual and cannot be tested directly, researchers often examine pre-treatment periods to check whether the time trends are parallel before treatment is administered. A recent literature has shown that existing preliminary tests have adverse effects on conventional statistical methods for estimation and inference, including low power, bias, and undercoverage. In this paper, we describe simple preliminary tests and corresponding confidence intervals for the causal effect which overcome these issues. Under mild separation conditions, the preliminary test is shown to be consistent and the confidence intervals for the causal effect have valid coverage conditional on passing the test. Our results hold under what we refer to as the conditional extrapolation assumption, which posits a relationship between the unidentified post-treatment violation of parallel trends and the identified pre-treatment violations. We view the conditional extrapolation assumption as one formalization of the assumption which is implicitly held when conducting a preliminary test for parallel trends. To illustrate the performance of the proposed methods, we use synthetic data as well as data on recentralization of public services in Vietnam and right-to-carry laws in Virginia.
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Statistics Theory
A theoretical comparison of weight constraints in forecast combination and model averaging
Jiahui Zou, Andrey Vasnev, Wendun Wang et al. (+1 more)
Forecast combination and model averaging have become popular tools in
forecasting and prediction, both of which combine a set of candidate estimates with certain weights and are often shown to outperform single estimates. A data-driven method to determine combination/averaging weights typically optimizes a criterion under certain weight constraints. While a large number of studies have been devoted to developing and comparing various weight choice criteria, the role of weight constraints on the properties of combination forecasts is relatively less understood, and the use of various constraints in practice is also rather arbitrary. In this study, we summarize prevalent weight constraints used in the literature, and theoretically and numerically compare how they influence the properties of the combined forecast. Our findings not only provide a comprehensive understanding on the role of various weight constraints but also practical guidance for empirical researchers how to choose relevant constraints based on prior information and targets.
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All authors Jiahui Zou, Andrey Vasnev, Wendun Wang, Xinyu Zhang
Statistical Methodology
Smoothed Quantile Estimation via Interpolation to the Mean
Saïd Maanan, Azzouz Dermoune and Ahmed El Ghini
This paper introduces a unified family of smoothed
quantile estimators that continuously interpolate between classical empirical
quantiles and the sample mean. The
estimators q(z, h) are defined as minimizers of a regularized objective function depending on two parameters: a smoothing parameter h $\ge$ 0 and a location parameter z $\in$ R. When h = 0 and z $\in$ (-1, 1), the
estimator reduces to the empirical
quantile of order $\tau$ = (1z)/2; as h $\rightarrow$ $\infty$, it converges to the sample mean for any fixed z. We establish consistency, asymptotic normality, and an explicit variance expression characterizing the efficiency-robustness trade-off induced by h. A key
geometric insight shows that for each fixed
quantile level $\tau$ , the admissible parameter pairs (z, h) lie on a straight line in the parameter space, along which the population
quantile remains constant while asymptotic efficiency varies. The analysis reveals two regimes: under light-tailed distributions (e.g., Gaussian), smoothing yields a monotonic but asymptotic variance reduction with no finite optimum; under heavy-tailed distributions (e.g., Laplace), a finite smoothing level h * ($\tau$ ) > 0 achieves strict efficiency improvement over the classical empirical
quantile. Numerical illustrations confirm these theoretical predictions and highlight how smoothing balances robustness and efficiency across
quantile levels.
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Machine Learning (Statistics)
Multi-Output Robust and Conjugate Gaussian Processes
Joshua Rooijakkers, Leiv Rønneberg, François-Xavier Briol et al. (+2 more)
Multi-output Gaussian process (MOGP) regression allows modelling dependencies among multiple correlated response variables. Similarly to standard Gaussian processes, MOGPs are sensitive to model misspecification and outliers, which can distort predictions within individual outputs. This situation can be further exacerbated by multiple anomalous response variables whose errors propagate due to correlations between outputs. To handle this situation, we extend and generalise the robust and conjugate Gaussian process (RCGP) framework introduced by Altamirano et al. (2024). This results in the multi-output RCGP (MO-RCGP): a provably robust MOGP that is conjugate, and jointly captures correlations across outputs. We thoroughly evaluate our approach through applications in finance and cancer research.
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All authors Joshua Rooijakkers, Leiv Rønneberg, François-Xavier Briol, Jeremias Knoblauch, Matias Altamirano
Statistics Theory · Cross-listed from cs.LG
Posterior Sampling by Combining Diffusion Models with Annealed Langevin Dynamics
Zhiyang Xun, Shivam Gupta and Eric Price
Given a noisy linear measurement $y = Ax + \xi$ of a distribution $p(x)$, and a good approximation to the prior $p(x)$, when can we sample from the posterior $p(x \mid y)$? Posterior sampling provides an accurate and fair framework for tasks such as inpainting, deblurring, and MRI reconstruction, and several heuristics attempt to approximate it. Unfortunately, approximate posterior sampling is computationally intractable in general. To sidestep this hardness, we focus on (local or global) log-concave distributions $p(x)$. In this regime, Langevin dynamics yields posterior samples when the exact scores of $p(x)$ are available, but it is brittle to score–estimation error, requiring an MGF bound (sub-exponential error). By contrast, in the unconditional setting,
diffusion models succeed with only an $L^2$ bound on the score error. We prove that combining
diffusion models with an annealed variant of Langevin dynamics achieves conditional sampling in
polynomial time using merely an $L^4$ bound on the score error.
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Machine Learning (Statistics) · Cross-listed from cs.LG
Implicit Bias of Per-sample Adam on Separable Data: Departure from the Full-batch Regime
Beomhan Baek, Minhak Song and Chulhee Yun
Adam [Kingma & Ba, 2015] is the de facto optimizer in deep learning, yet its theoretical understanding remains limited. Prior analyses show that Adam favors solutions aligned with $\ell_\infty$-geometry, but these results are restricted to the full-batch regime. In this work, we study the implicit bias of incremental Adam (using one sample per step) for logistic regression on linearly separable data, and show that its bias can deviate from the full-batch behavior. As an extreme example, we construct
datasets on which incremental Adam provably converges to the $\ell_2$-max-margin classifier, in contrast to the $\ell_\infty$-max-margin bias of full-batch Adam. For general
datasets, we characterize its bias using a proxy
algorithm for the $\beta_2 \to 1$ limit. This proxy maximizes a data-adaptive Mahalanobis-norm margin, whose associated covariance
matrix is determined by a data-dependent dual fixed-point formulation. We further present concrete
datasets where this bias reduces to the standard $\ell_2$- and $\ell_\infty$-max-margin classifiers. As a counterpoint, we prove that Signum [Bernstein et al., 2018] converges to the $\ell_\infty$-max-margin classifier for any batch size. Overall, our results highlight that the implicit bias of Adam crucially depends on both the batching scheme and the
dataset, while Signum remains invariant.
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Statistical Methodology
Estimating heritability of survival traits using censored multiple variance component model
Do Hyun Kim, Hua Zhou, Brendon Chau et al. (+5 more)
Characterizing the genetic basis of survival traits, such as age at disease onset, is critical for risk stratification, early intervention, and elucidating biological mechanisms that can inform therapeutic development. However, time-to-event outcomes in human cohorts are frequently right-censored, complicating both the estimation and partitioning of total heritability. Modern biobanks linked to electronic health records offer the unprecedented power to dissect the genetic basis of age-at-diagnosis traits at large scale. Yet, few methods exist for estimating and partitioning the total heritability of censored survival traits. Existing methods impose restrictive distributional assumptions on genetic and environmental effects and are not scalable to large biobanks with a million subjects. We introduce a censored multiple variance component model to robustly estimate the total heritability of survival traits under right-censoring. We demonstrate through extensive simulations that the method provides accurate total heritability estimates of right-censored traits at censoring rates up to 80% given sufficient sample size. The method is computationally efficient in estimating one hundred genetic variance components of a survival trait using large-scale biobank genotype data consisting of a million subjects and a million SNPs in nine hours, including uncertainty quantification. We apply our method to estimate the total heritability of four age-at-diagnosis traits from the UK Biobank study. Our results establish a scalable and robust framework for heritability analysis of right-censored survival traits in large-scale genetic studies.
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All authors Do Hyun Kim, Hua Zhou, Brendon Chau, Aubrey Jensen, Judong Shen, Devan Mehrotra, Gang Li, Jin J. Zhou
Statistics Theory
Sequential Change Detection Under Markov Setup With Unknown Prechange And Postchange Distributions
Ashish Bhoopesh Gulaguli, Shashwat Singh and Rakesh Kumar Bansal
In this work we extend the results developed in 2022 for a sequential change detection
algorithm making use of Page's CUSUM statistic, the empirical distribution as an estimate of the pre-change distribution, and a universal code as a tool for estimating the post-change distribution, from the i.i.d. case to the Markov setup.
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Statistical Methodology
Variable selection in spatial lag models using the focussed information criterion
Sagar Pandhare, Divya Kappara and Siuli Mukhopadhyay
Spatial regression models have a variety of applications in several fields ranging from economics to public health. Typically, it is of interest to select important exogenous predictors of the spatially autocorrelated response variable. In this paper, we propose variable selection in linear spatial lag models by means of the focussed information criterion (FIC). The FIC-based variable selection involves the minimization of the asymptotic risk in the estimation of a certain parametric focus function of interest under potential model misspecification. We systematically investigate the key asymptotics of the maximum likelihood
estimators under the sequence of locally perturbed mutually contiguous probability models. Using these results, we obtain the expressions for the bias and the variance of the estimated focus leading to the desired FIC formula. We provide practically useful focus functions that account for various spatial characteristics such as mean response, variability in the estimation and spatial spillover effects. Furthermore, we develop an averaged version of the FIC that incorporates varying
covariate levels while evaluating the models. The empirical performance of the proposed methodology is demonstrated through simulations and real data analysis.
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Machine Learning (Statistics)
Uncertainty-Aware Diagnostics for Physics-Informed Machine Learning
Mara Daniels, Liam Hodgkinson and Michael Mahoney
Physics-informed machine learning (PIML) integrates prior physical information, often in the form of differential equation constraints, into the process of fitting machine learning models to physical data. Popular PIML approaches, including neural operators, physics-informed neural networks, neural ordinary differential equations, and neural discrete
equilibria, are typically fit to objectives that simultaneously include both data and physical constraints. However, the multi-objective nature of this approach creates ambiguity in the measurement of model quality. This is related to a poor understanding of epistemic uncertainty, and it can lead to surprising failure modes, even when existing statistical metrics suggest strong fits. Working within a Gaussian process regression framework, we introduce the Physics-Informed Log Evidence (PILE) score. Bypassing the ambiguities of test losses, the PILE score is a single, uncertainty-aware metric that provides a selection principle for hyperparameters of a PIML model. We show that PILE minimization yields excellent choices for a wide variety of model parameters, including kernel bandwidth, least squares regularization weights, and even kernel function selection. We also show that, even prior to data acquisition, a special 'data-free' case of the PILE score identifies a priori kernel choices that are 'well-adapted' to a given PDE. Beyond the kernel setting, we anticipate that the PILE score can be extended to PIML at large, and we outline approaches to do so.
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Statistical Methodology
Poisson process factorization for modeling mutational processes along cancer genomes
Alessandro Zito, Giovanni Parmigiani and Jeffrey W. Miller
Cancer
cells acquire DNA mutations through many processes, such as environmental exposures and dysregulated repair mechanisms, and each process consistently produces distinct mutation types at characteristic frequencies, referred to as its signature. The usual approach for inferring these signatures is to decompose the
matrix of mutation counts from a sample of tumors via non-negative
matrix factorization (NMF). However, existing methods do not model the heterogeneity of mutation rates along the genome, which is driven in part by observed genomic features. In this paper, we introduce Poisson process factorization (PPF), which addresses this limitation by employing an inhomogeneous Poisson point process model to infer mutational signatures and their activities as they vary across the genome. PPF generalizes the baseline NMF model by representing a patient's exposure to each signature as a locus-specific function that depends on genomic
covariates and patient-specific copy numbers via a log-linear model. We apply PPF to a sample of 113 breast tumors with $707{,}104$ mutations, using
covariates representing histone modifications,
cell replication timing, nucleosome positioning, and DNA methylation. Our analysis quantifies the joint effects of these features on the mutational processes in breast cancer, and estimates patient-specific activities of each signature as a function of genomic position.
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Statistics Theory · Cross-listed from cs.LG
Learning Geometry: A Framework for Building Adaptive Manifold Models through Metric Optimization
Di Zhang
This paper proposes a novel paradigm for machine learning that moves beyond traditional parameter optimization. Unlike conventional approaches that search for optimal parameters within a fixed
geometric space, our core idea is to treat the model itself as a malleable
geometric entity. Specifically, we optimize the metric tensor field on a
manifold with a predefined
topology, thereby dynamically shaping the
geometric structure of the model space. To achieve this, we construct a variational framework whose loss function carefully balances data fidelity against the intrinsic
geometric complexity of the
manifold. The former ensures the model effectively explains observed data, while the latter acts as a regularizer, penalizing overly curved or irregular geometries to encourage simpler models and prevent overfitting. To address the computational challenges of this infinite-dimensional optimization problem, we introduce a practical method based on discrete differential geometry: the continuous
manifold is discretized into a triangular mesh, and the metric tensor is parameterized by edge lengths, enabling efficient optimization using automatic differentiation tools. Theoretical analysis reveals a profound analogy between our framework and the Einstein-
Hilbert action in general relativity, providing an elegant physical interpretation for the concept of "data-driven geometry". We further argue that even with fixed
topology, metric optimization offers significantly greater expressive power than models with fixed geometry. This work lays a solid foundation for constructing fully dynamic "meta-learners" capable of autonomously evolving their geometry and
topology, and it points to broad application prospects in areas such as scientific model discovery and robust representation learning.
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Machine Learning (Statistics)
Data-driven Projection Generation for Efficiently Solving Heterogeneous Quadratic Programming Problems
Tomoharu Iwata and Futoshi Futami
We propose a data-driven framework for efficiently solving quadratic programming (QP) problems by reducing the number of variables in high-dimensional QPs using instance-specific projection. A graph neural network-based model is designed to generate projections tailored to each QP instance, enabling us to produce high-quality solutions even for previously unseen problems. The model is trained on heterogeneous QPs to minimize the expected objective value evaluated on the projected solutions. This is formulated as a bilevel optimization problem; the inner optimization solves the QP under a given projection using a QP solver, while the outer optimization updates the model parameters. We develop an efficient
algorithm to solve this bilevel optimization problem, which computes parameter gradients without backpropagating through the solver. We provide a theoretical analysis of the generalization ability of solving QPs with projection
matrices generated by neural networks. Experimental results demonstrate that our method produces high-quality feasible solutions with reduced computation time, outperforming existing methods.
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Statistical Methodology
A L-infinity Norm Synthetic Control Approach
Le Wang, Xin Xing and Youhui Ye
This paper reinterprets the Synthetic Control (SC) framework through the lens of weighting philosophy, arguing that the contrast between traditional SC and Difference-in-Differences (DID) reflects two distinct modeling mindsets: sparse versus dense weighting schemes. Rather than viewing sparsity as inherently superior, we treat it as a modeling choice simple but potentially fragile. We propose an L-infinity-regularized SC method that combines the strengths of both approaches. Like DID, it employs a denser weighting scheme that distributes weights more evenly across control units, enhancing robustness and reducing overreliance on a few control units. Like traditional SC, it remains flexible and data-driven, increasing the likelihood of satisfying the parallel trends assumption while preserving interpretability. We develop an interior point
algorithm for efficient computation, derive asymptotic theory under weak dependence, and demonstrate strong finite-sample performance through simulations and real-world applications.
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Statistics Theory · Cross-listed from econ.EM
Estimation and Inference in Boundary Discontinuity Designs: Distance-Based Methods
Matias D. Cattaneo, Rocio Titiunik and Ruiqi Rae Yu
We study nonparametric distance-based (isotropic) local
polynomial methods for estimating the boundary average treatment effect curve, a causal functional that captures treatment effect heterogeneity in boundary discontinuity designs. We establish identification, estimation, and inference results both pointwise and uniformly along the treatment assignment boundary. We show that the
geometric regularity of the boundary, a one-dimensional
manifold, plays a central role in determining feasible convergence rates and valid inference procedures. Our theoretical contributions are threefold. First, we derive uniform lower and upper bounds on the convergence rate of the misspecification bias of isotropic local
polynomial estimators. Second, we obtain uniform distributional approximations that justify boundary-robust inference. Third, we establish minimax lower bounds for a broad class of nonparametric isotropic regression
estimators. These results yield practical guidance for empirical implementation, including new bandwidth selection rules that adapt to local irregularities of the treatment-assignment boundary. We illustrate the proposed methods using simulation evidence and an empirical application, and provide companion general-purpose software.
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Machine Learning (Statistics)
Bias-Corrected Data Synthesis for Imbalanced Learning
Pengfei Lyu, Zhengchi Ma, Linjun Zhang et al. (+1 more)
Class imbalance complicates probabilistic classification because standard training objectives emphasize majority-class performance. Synthetic oversampling can reduce imbalance, but discrepancies between the synthetic and target minority distributions may bias the fitted classifier, especially because synthetic samples depend on the observed data. We propose a bias-correction procedure that estimates the generator-induced loss discrepancy from a held-out subset of majority observations and transfers this correction to the minority class under a uniform bias-transfer condition. We establish finite-sample bounds for bias transfer and for the excess balanced risk of the resulting empirical risk minimizer, and characterize a regime in which SMOTE induces non-negligible loss bias. The framework can also be implemented in imbalanced multi-task learning and propensity-score estimation, with details provided in the Supplementary Material. Real data analyses show that the correction is most useful when synthetic distortion is appreciable.
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All authors Pengfei Lyu, Zhengchi Ma, Linjun Zhang, Anru R. Zhang
Statistics Theory
Fixed and Increasing Domain Asymptotics for the Roughness and Scale of Isotropic Gaussian Random Fields
Varun Kotharkar and Michael L. Stein
We establish a rigorous asymptotic theory for the joint estimation of roughness and scale parameters in two-dimensional Gaussian random fields with power-law generalized covariances \cite{Matheron1973, Stein1999, Yaglom1987}. Our main results are bivariate central limit
theorems for a class of method-of-moments
estimators under increasing-domain and fixed-domain asymptotics. The fixed-domain result follows immediately from the increasing-domain result from the self-similarity of Gaussian random fields with power-law generalized covariances \cite{IstasLang1997, Coeurjolly2001, ZhuStein2002}. These results provide a unified distributional framework across these two classical regimes \cite{AvramLeonenkoSakhno2010-ESAIM, BiermeBonamiLeon2011-EJP} that makes the unusual behavior of the estimates under fixed-domain asymptotics intuitively obvious. Our increasing-domain asymptotic results use spatial averages of quadratic forms of (iterated) bilinear product difference filters that yield explicit expressions for the estimates of roughness and scale to which existing
theorems on such averages \cite{BreuerMajor1983,Hannan1970} can be readily applied. We further show that the asymptotics remain valid under modestly irregular sampling due to jitter or missing observations. For the fixed-domain setting, the results extend to models that behave sufficiently like the power-law model at high frequencies such as the often used Matérn model \cite{ZhuStein2006, WangLoh2011EJS, KaufmanShaby2017EJS}.
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Machine Learning (Statistics)
$L_1$-norm Regularized Indefinite Kernel Logistic Regression
Shaoxin Wang and Hanjing Yao
Kernel logistic regression (KLR) is a powerful classification method widely applied across diverse domains. In many real-world scenarios, indefinite kernels capture more domain-specific structural information than positive definite kernels. This paper proposes a novel $L_1$-norm regularized indefinite kernel logistic regression (RIKLR) model, which extends the existing IKLR framework by introducing sparsity via an $L_1$-norm penalty. The introduction of this regularization enhances interpretability and generalization while introducing nonsmoothness and nonconvexity into the optimization landscape. To address these challenges, a theoretically grounded and computationally efficient proximal linearized
algorithm is developed. Experimental results on multiple
benchmark datasets demonstrate the superior performance of the proposed method in terms of both accuracy and sparsity.
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