Materials Science
Functional and Density-Driven Errors in Density Functional Theory: Quantum Monte Carlo Benchmarks for Solids
Ayoub Aouina, Nicolas Tancogne-Dejean and Silvana Botti
We introduce a systematic analysis of density functional approximation errors in solids by separating functional-driven from density-driven contributions using
quantum Monte Carlo densities of silicon, sodium chloride, and copper as reference. Typically, functional errors dominate, but we identify important exceptions where density-driven errors exceed functional errors by factors of 2-3, notably for SOGGA11 and {\tau}-HCTH in the
semiconductor and the
insulator. Material dependence is striking: 63% of functionals show error cancellation in silicon versus 18% in copper, and only five functionals surpass LDA accuracy for metallic copper even with exact densities. For silicon and sodium chloride, GILL or BECKE exchange combined with PBE, PW91, or P86 correlation achieves near-exact xc energies on QMC densities, while copper requires specialized functionals like PBEsol or PBELYP. High-quality densities consistently reduce density-driven errors across all systems. Historical analysis reveals that 1990s GGA functionals outperform many modern meta-GGAs, contradicting expectations of systematic improvement along Jacob's ladder. These results provide practical guidance for functional selection and highlight implications for machine learning potential development, where material-dependent error cancellation may compromise transferability.
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Mesoscale and Nanoscale Physics
Anisotropic Surface Spin Waves as Signature of A-type Altermagnets
Zhoujian Sun, Yiyuan Chen, Tao Yu et al. (+2 more)
Altermagnets have attracted intense interest because they have the advantages of both ferromagnets and antiferromagnets. However, their experimental identification remains challenging, in particular for the A-type altermagnets that account for a large group of material candidates. Here, we discover a kind of anisotropic surface
spin waves in A-type altermagnets, which is absent in ferromagnets and conventional antiferromagnets. The anisotropic surface
spin waves arise directly from the nature of altermagnets, i.e., the
spin-opposite sublattices cannot be related by translation or inversion, which breaks the combined spatial-inversion and time-reversal
symmetry, leading to the anisotropic surface
spin waves with two properties, the chirality-dependent top-bottom positions and
chiral split constant frequency contours. We further show that these two properties can be measured experimentally from the stray field and by resonance absorption spectrum, respectively. Our results provide a signature for detecting altermagnets and will inspire
spin-based logic and information-storage devices.
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All authors Zhoujian Sun, Yiyuan Chen, Tao Yu, Hai-Zhou Lu, X. C. Xie
Soft Condensed Matter · Cross-listed from math-ph
Weakly nonlinear dynamics of follower-force-induced oscillations in Cosserat rods
Mohamed Warda
We investigate the weakly nonlinear dynamics of the flutter instability of a planar Cosserat rod in a viscous fluid driven by a terminal follower force. Building on our previous linear stability analysis, we derive Stuart-Landau amplitude equations governing the emergence and saturation of oscillations near the
Hopf bifurcation. The Landau coefficients are expressed in terms of the critical eigenmode, its adjoint, and quadratic correction fields arising from the asymptotic expansion. The reduced theory predicts the criticality of the
Hopf bifurcations, the saturated oscillation amplitude, and the nonlinear frequency correction, in quantitative agreement with direct numerical simulations for representative material parameter regimes. Applying the theory to both stability boundaries of the finite oscillatory window, we find that the lower
Hopf bifurcations are supercritical, whereas the upper restabilization threshold is subcritical. These results provide a normal-form description of follower-force-driven oscillations in geometrically exact Cosserat rods and a reduced framework for studying nonconservative elastohydrodynamic instabilities in soft robotic structures and active filaments.
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Materials Science
Telecom-Wavelength-Compatible Quantum Information Transcription Using Nitrogen-Vacancy Centers
B. Göblyös, S. Kollarics, R. Kucsera et al. (+5 more)
Nitrogen-vacancy (NV) centers in diamond are a leading platform for solid-state
quantum sensing and
quantum information processing. While most optical studies rely on the visible fluorescence associated with the triplet transitions, the infrared singlet transition near $1042$ nm, which is typically considered dark within the singlet
manifold of the NV optical cycle, provides an alternative optical channel. Here, we report wavelength-resolved optically detected
magnetic resonance (ODMR) measurements of this infrared emission. We directly observe ODMR contrast in the $1042$ nm emission and analyze its dependence on the
magnetic field. The field-dependent spectral dispersion of the ODMR signal demonstrates that the
spin-state information encoded in the NV center is transcribed to the infrared singlet emission through the
spin-selective intersystem crossing, in close analogy to the visible fluorescence readout. These results establish infrared ODMR as a high-fidelity optical readout pathway. Crucially, by extending
spin-state transcription directly into the $1300-1600$ nm range, this work demonstrates a direct, conversion-free interface between diamond
spin-
qubits and standard telecommunication infrastructure, bypassing the efficiency bottlenecks of active frequency conversion and benefiting from the already well-developed technologies in this range of the electromagnetic spectrum.
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All authors B. Göblyös, S. Kollarics, R. Kucsera, D. Plitt, K. Koltai, B. G. Márkus, L. Forró, F. Simon
Quantum Gases · Cross-listed from physics.chem-ph
Generalized Suzuki-Chin Factorization in Bosonic Path Integral Molecular Dynamics
Jacob Higer and Barak Hirshberg
Modern implementations of path integral molecular dynamics (PIMD) simulations of distinguishable particles frequently make use of high order factorization schemes for the Boltzmann operator to expedite convergence of
equilibrium averages. Among these methods is the generalized Suzuki-Chin factorization (GSF), which is accurate up to fourth order in the imaginary-time step. In this work, we show that the GSF decomposition of the Boltzmann operator is applicable to bosonic PIMD, and results in an improved convergence of
estimators. In particular, we show that the recently developed quadratic scaling bosonic PIMD need not change when using the GSF. The GSF scheme is implemented as a re-weighting factor for observables, without affecting the sampling generated by the standard, second-order, primitive factorization. We study the effect of this factorization for
bosons in a harmonic trap and a sinusoidal potential. We also assess the effectiveness of GSF in calculating fermionic expectation values for harmonically-trapped atoms. In all these cases, we find that the GSF speeds up convergence with the Trotter number by a factor of $\sim 2-4$ across a wide temperature range, at only a modest computational cost.
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Statistical Mechanics · Cross-listed from cs.LG
Spontaneous symmetry breaking and Goldstone modes for deep information propagation
Nabil Iqbal, T. Anderson Keller, Yue Song et al. (+2 more)
In physical systems, whenever a continuous
symmetry is spontaneously broken, the system possesses excitations called Goldstone modes, which allow coherent information propagation over long distances and times. In this work, we study deep neural networks whose internal layers are equivariant under a continuous
symmetry and may therefore support analogous Goldstone-like degrees of freedom. We demonstrate, both analytically and empirically, that these degrees of freedom enable coherent signal propagation across depth and recurrent iterations, providing a mechanism for stable information flow without relying on architectural stabilizers such as residual connections or normalization. In feedforward networks, this results in improved trainability and representational diversity across layers. In recurrent settings, we demonstrate the same mechanism is valuable for long-term
memory by propagating information over recurrent iterations, thereby improving performance of RNNs and GRUs on long-sequence modeling tasks.
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All authors Nabil Iqbal, T. Anderson Keller, Yue Song, Takeru Miyato, Max Welling
Mesoscale and Nanoscale Physics
Compositional and Magnetic Characterisation of Oblique Co and Fe Nanowire Structures Fabricated Using Focused Electron Beam Induced Deposition
Aurys Silinga, Keir Edgar, Stephen McVitie et al. (+4 more)
Focused electron beam induced deposition (FEBID) is an additive manufacturing technique uniquely suited for fabricating functional 3D nanostructures for a range of applications, including spintronic devices. However, the variation of growth dynamics associated with lateral movement of the electron beam results in structures with non-uniform composition when fabricating intricate 3D geometries. Herein, we measure changes in atomic composition and corresponding changes in
magnetic induction in 3D
ferromagnetic nanostructures with overhanging elements, e.g. bridges or arches. To investigate the effects of electron beam lateral movement, we fabricated Co and Fe nanowire (NW) structures with growth angle relative to the optic axis varying from 0{\deg} to 90{\deg}. The (scanning) transmission electron microscopy techniques of electron energy loss spectroscopy and off-axis electron holography were performed to map the NW elemental composition and
magnetic induction as a function of NW growth angle. Comparison of the results reveals a reduction in metal content with increased growth angle in FEBID NWs. The magnitude of metal content reduction can be tuned by controlling electron beam parameters, and
ferromagnetic NWs with approximately equal metal content at growth angles from 0{\deg} to 60{\deg} were fabricated by using the lowest viable electron beam voltage and the highest viable beam current to reduce the interaction volume and increase the metal content, respectively.
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All authors Aurys Silinga, Keir Edgar, Stephen McVitie, Kayla Fallon, András Kovács, Rafal E. Dunin-Borkowski, Trevor P. Almeida
Materials Science
Agentic Design of Compositional Descriptors via Autoresearch for Materials Science Applications
Matteo Cobelli and Stefano Sanvito
Autoresearch offers a flexible paradigm for automating scientific tasks, in which an AI
agent proposes, implements, evaluates, and refines candidate solutions against a quantitative objective. Here, we use composition-based materials-property prediction to test whether such
agents can perform a task beyond model selection and hyperparameter optimization: the design of input descriptors. We introduce Automat, an autoresearch framework where a coding
agent based on a large
language model generates composition-only descriptors for chemical compounds and evaluates them using a random forest workflow. The
agent is restricted to information derivable from chemical formulas and iteratively proposes, implements, and tests chemically motivated descriptor strategies. We apply Automat, with OpenAI Codex using GPT-5.5 as the coding
agent, to the prediction of experimental band gaps in inorganic materials and Curie temperatures in
ferromagnetic compounds. In both tasks, Automat improves over fractional-composition, Magpie, and combined fractional-composition/Magpie baselines, while producing descriptor families that are chemically interpretable. These results provide a demonstration that autoresearch
agents can generate competitive, task-specific materials descriptors without manual feature engineering during the run. They also reveal current limitations, including descriptor redundancy, sensitivity to greedy feature expansion, and the need for explicit complexity control, descriptor
pruning, and more sophisticated search strategies.
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Materials Science
N-Graphdiyne as a Tunable Platform for Stabilizing Light Metals toward High-Capacity Reversible Hydrogen Storage
Wael Othman, Ibrahim Alghoul, K-F. Aguey-Zinsou5 et al. (+2 more)
Hydrogen (H2) is a promising carbon-neutral energy carrier. However, its deployment is limited by the lack of lightweight, reversible storage media that operate under practical conditions. Here, we establish nitrogen-doped graphdiyne (N-GDY) as a programmable two-dimensional platform for stabilizing dispersed light-metal dopants and enabling high-capacity physisorption of molecular H2. The computational package involves density functional theory (DFT) combined with ab initio molecular dynamics (AIMD) and Langmuir-based statistical thermodynamic modeling. The results revealed that N-sites of N-GDY bind up to five Li, Na, K, and Ca atoms per primitive
cell with binding energies of -2.27, -1.57, -1.80, and -2.13 eV, respectively, exceeding their respective bulk cohesive energies. AIMD simulations at 400 K further confirm the structural robustness of the decorated frameworks and the absence of metal aggregation. The polarised metal centres activate reversible H2 adsorption through electrostatic and dispersion interactions, with average adsorption energies falling within the optimal window (-0.15 to -0.35 eV per H2). Sequential adsorption analysis reveals uptake of up to 25 H2 molecules per primitive
cell, achieving intrinsic gravimetric capacities of 13.08, 10.82, 9.23, and 9.15 wt% for Li-, Na-, K-, and Ca-functionalized systems, respectively. Thermodynamic analysis indicates favorable adsorption-desorption behavior under near-ambient conditions, with Li- and Ca-functionalized systems exceeding the 6.5 wt% U.S. Department of Energy's ultimate system-level target when considering intrinsic material capacity. These results identify N-GDY as a chemically tunable scaffold for dispersing lightweight metals and provide a mechanistic design strategy for achieving high-capacity, reversible hydrogen storage in porous two-dimensional materials.
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All authors Wael Othman, Ibrahim Alghoul, K-F. Aguey-Zinsou5, Nacir Tit, Tanveer Hussain
Mesoscale and Nanoscale Physics
Spin resolved spectral topology and re-entrant localization in a non Hermitian quasiperiodic SSH chain
Hemant K Sharma
We investigate localization and spectral
topology in a non Hermitian quasiperiodic Su Schrieffer Heeger
lattice with Rashba
spin orbit coupling and
spin-dependent hopping. By analyzing the inverse participation ratio, complex energy spectrum, and spectral winding numbers, we demonstrate the emergence of a re-entrant transition from extended to localized and back to extended phases as the non-Hermitian parameter increases. The localization transition is accompanied by a simultaneous real-complex-real spectral transition in the complex-energy plane. In the absence of
spin dependent hopping, the spectrum forms two nearly
spin-degenerate loops characterized by winding numbers w = 2. Upon introducing finite
spin-dependent hopping, each loop splits into two independent
spin-resolved spectral branches, resulting in four disconnected spectral contours carrying distinct winding sectors. Our results reveal a direct correspondence between localization, spectral
topology, and
spin-resolved spectral splitting in non-Hermitian quasiperiodic systems.
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Strongly Correlated Electrons
A DFT+DMFT study of the electronic structure of Samarium
Shengsong Xu, Zhenfeng Ouyang, Li Huang et al. (+1 more)
The electronic structure of Samarium (Sm) was calculated using the density functional theory combined with the single-site dynamical mean-field theory. In this work, we investigated the electronic properties of {\alpha}, e̱ta} and {\gamma} phases at ambient pressure, including the band structures, density of states, self-energy functions and valence state histograms. Our results agree with the experimental data.The calculation shows that the 4f electrons in all these phases are well localized, the Kondo peaks are suppressed and the hybridization between the 4f electrons and conduction electrons are quite weak. Our results also show the strong correlation effect is significant in Sm metal.
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All authors Shengsong Xu, Zhenfeng Ouyang, Li Huang, Zhong-Yi Lu
Other Condensed Matter · Cross-listed from physics.optics
Entangled Telecom Photon Generation using Twisted Van der Waals Crystals
Nidhin Prasannan, Konstantinos Mourzidis, Vishwas Jindal et al. (+11 more)
Nanoscale
quantum light sources are essential building blocks for integrated
quantum photonic systems. Here, we report a wavelength-scale entangled-
photon source based on van der Waals-engineered NbOBr$_2$, and
benchmark its performance for telecom-wavelength
quantum light generation. By exploiting the material's second-order nonlinearity, we generate
quantum-correlated
photon pairs via spontaneous parametric down-conversion. We then use a 90$^{\circ}$ twisted stacking to induce
quantum interference in
photon-pair generation, yielding polarization-entangled
photons. This approach enables tunability of the
quantum optical state via control of the excitation
laser polarization. We experimentally obtain
entanglement fidelities exceeding 95% for Bell states, along with a high coincidence-to-accidental ratio of $\sim$335, and a brightness approximately one order of magnitude higher than recently reported telecom sources based on transition metal dichalcogenide (TMD) 2D materials. These results establish twisted van der Waals engineering as a powerful platform for highly tunable, high-brightness
quantum light sources at telecom wavelengths.
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All authors Nidhin Prasannan, Konstantinos Mourzidis, Vishwas Jindal, Hanting Li, Di Lin, Wenchen Yang, Deng Hu, Liu Yang, Andrea Balocchi, Delphine Lagarde, Pierre Renucci, Zhiwei Wang, Gang Wang, Xavier Marie
Mesoscale and Nanoscale Physics · Cross-listed from quant-ph
Fraxonium: Fractional fluxon states for qudit encoding
Luca Chirolli, Valentina Brosco, Uri Vool et al. (+2 more)
We propose a superconducting
circuit hosting $d$ low-lying states, well separated from the rest of the spectrum, that naturally realizes a qudit system protected from leakage errors. The system represents a generalization of the fluxonium and the low-energy states are constituted by fractional fluxon states, that we call fraxons, localized in the minima of a suitably designed Josephson potential. The latter is tailored through a
Fourier engineering approach, that employs multi-harmonic Josephson building block elements composed by a Josephson junction and an inductance connected in series. We present the spectrum of a $d=4$ and a $d=5$ qudit system and study in detail the qutrit case. We analyze the dipole
matrix elements for coupling to radiation and propose a non-Abelian, stimulated Raman adiabatic passage (STIRAP) protocol for single-qutrit gates, that is particularly suited for the present system. The proposed platform opens novel perspectives in
circuit engineering and
quantum computing beyond the
qubit paradigm.
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All authors Luca Chirolli, Valentina Brosco, Uri Vool, Gianluigi Catelani, Luigi Amico
Soft Condensed Matter
Kinetic effects on the phase behavior and microstructural transitions of a thermoresponsive polymer solution
Pritha Acharya, Riya Karmakar and Khushboo Suman
The thermoresponsive behavior of Pluronic F127 solutions is governed by temperature-dependent micellization and complex self-assembly of these micelles. This study investigates the effect of thermal stimuli on the kinetics of phase transition of Pluronic systems during heating and cooling cycles. We employ Differential Scanning Calorimetry measurements to investigate the dependence of the micellization temperature on thermal stimuli, revealing that both the micellization temperature and the peak intensity vary systematically with the applied thermal ramp rate. Furthermore, we employ rheological characterization which reveals a sharp sol to soft-solid transition upon heating. Interestingly, we observe a novel multi-step transition during the cooling phase, indicating a more complex reorganization pathway with intermediate metastable states than typically assumed for reversible micellization. Our findings indicate that the characteristic multi-step cooling transition is transient, gradually weakening with successive thermal cycles. We also present a comprehensive mathematical model which accurately captures the kinetics and multiple step transition in viscoelastic parameters. Significantly, the distinct peaks in Small-Angle X-ray Scattering (SAXS) measurements clearly reveal the
evolution from a disordered unimers/micelles state at low temperatures to a highly ordered
lattice with long-range spatial correlation at elevated temperatures. We also present a comprehensive phase diagram highlighting the critical role of thermal stimuli and pathways in defining the phase behavior of Pluronic system. This work, therefore, offers essential experimental and theoretical insights into the thermally driven self-assembly, transition kinetics, and microstructural
evolution of thermoreversible Pluronic solution.
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Soft Condensed Matter · Cross-listed from q-bio.MN
Autonomous Reshaping of Expression Landscapes by DNA Methylation
Kaifeng Wang and Ming Han
DNA methylation is usually treated as an epigenetic
memory mark: transcriptional history is written into regulatory DNA and later stabilizes a chosen
cell identity. This picture explains persistence, but it makes
memory passive. Here we show that the same promoter-level coupling required for methylation
memory can instead turn methylation into an internal control variable for regulatory dynamics. Transcription-factor occupancy protects regulatory DNA from methylation, while methylation shifts later transcription-factor binding thresholds. Under time-scale separation, this reciprocal loop separates into fast expression dynamics conditioned on methylation and a slow methylation flow written by expression. Minimal promoter, self-activation, and fate-toggle models show that this feedback does more than preserve a past state: it autonomously reshapes the expression landscape. In a methylation-coupled toggle, the preferred expression state can move continuously through single-well drift, allowing commitment without first entering a multiwell regime.
Stochastic simulations further show that evolving methylation reduces fate reversals relative to a frozen landscape, making weak early expression bias more predictive of later fate. These results recast DNA methylation from a downstream stabilizer of
cell identity into a slow dynamical coordinate that can help determine how regulatory states are chosen.
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Materials Science
Tunable Dual-Type Weyl Points in Dirac-Weyl Semimetal CaAgBi
Shenghao Huang, Heng Gao, Hongfei Wang et al. (+1 more)
Dirac-Weyl semimetals host both Dirac and Weyl
fermions and the exploration of material candidates with tunable topological properties is essential to realize topological spintronic devices. In this work, we propose CaAgBi as a Dirac-Weyl semimetal with tunable type-I and type-II Weyl points based on first-principle calculations. In addition to the three pairs of Dirac points located along the rotational axis as previously reported, our calculations reveal 18 additional pairs of dual-type Weyl points distributed across three distinct planes: type-I in the $k_z=0$ plane and type-II in the $k_z= \pm 0.0698\,\frac{2\pi}{c}$ planes. The topological features are further confirmed through chirality of the Weyl points as well as the existence of surface
Fermi arcs. Moreover, we find that the position and annihilation of Dirac and Weyl points are tunable by the
alloy engineering and external strains. The
alloy engineering is employed to modulate the positions of Weyl points, revealing different annihilation concentrations for type-I and type-II Weyl points, potentially offering novel experimental strategies for Weyl point manipulation. Under tensile biaxial strain, the Weyl points in the $k_{z}=0$ plane annihilate along the $\Gamma$–$\mathrm{M}$ path at $2.1\%$ strain, whereas the Weyl points in the $k_{z}\neq 0$ planes remain robust within $6\%$ strain. This work provides a versatile platform for manipulating Dirac/Weyl interactions, with
spin-orbit coupling (SOC) driven
alloy control and strain-selective engineering opening avenues for topological electronics.
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All authors Shenghao Huang, Heng Gao, Hongfei Wang, Wei Ren
Materials Science
Biquadratic exchange coupling effect on the magnetic properties of (Fe/Ti) multilayers
Melissa Yactayo, H. S. Tarazona, O. Copie et al. (+3 more)
This work explores the static and dynamic
magnetic properties of weakly antiferromagnetically coupled Fe/Ti superlattices, emphasizing the link between
magnetic behavior and structural characteristics. HRTEM and XRD analyses confirm alternating Fe and Ti layers with rough interfaces, especially in upper layers.
Magnetic measurements reveal two-step hysteresis loops and a temperature and thickness-dependent interlayer exchange coupling (IEC). A macrospin model incorporating bilinear and biquadratic coupling reproduces the experimental data and supports a phase diagram analysis identifying non-collinear configurations. The results underscore the impact of structural imperfections and highlight the crucial role of biquadratic exchange in Fe/Ti/Fe multilayers.
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All authors Melissa Yactayo, H. S. Tarazona, O. Copie, J.-C. Rojas-Sánchez, J. Quispe-Marcatoma, C. V. Landauro
Materials Science
Methane hydrate nucleation frustration and dimensional reduction of structural order under nanoconfinement
Jose Torres-Arenas, Ángel M. Fernández-Fernández, Martín Pérez-Rodríguez et al. (+1 more)
Methane hydrate nucleation under nanoconfinement remains poorly understood due to the complex interplay between
geometric restriction and molecular ordering. Here, we investigate the structural organization of water-methane systems confined between silica planar slit pores with widths ranging from 1 to 5 nm and temperatures between 250 and 295 K. Three-dimensional radial distribution functions reveal a clear suppression of hydrate-like ordering at strong confinement (below 2 nm), indicating frustrated nucleation. In contrast, projected two-dimensional correlations exhibit pronounced in-plane structural organization, evidencing a confinement-induced reduction in the dimensionality of molecular order.
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All authors Jose Torres-Arenas, Ángel M. Fernández-Fernández, Martín Pérez-Rodríguez, Manuel M. Piñeiro
Materials Science · Cross-listed from cs.LG
Lang2MLIP: End-to-End Language-to-Machine Learning Interatomic Potential Development with Autonomous Agentic Workflows
Wenwen Li, Yuki Orimo and Nontawat Charoenphakdee
Developing machine learning interatomic potentials (MLIPs) for complex materials systems remains challenging because it requires expertise in atomistic simulations, machine learning, and workflow design, as well as iterative active learning procedures. Existing automated pipelines typically assume a fixed sequence of stages or depend on domain experts, which limits their adaptability to heterogeneous materials systems where the optimal curriculum is not known in advance. To lower the barrier to developing MLIPs for non-experts, we propose Lang2MLIP, a multi-
agent framework that takes natural-
language input and formulates end-to-end MLIP development as a sequential decision-making problem solved by large
language models (LLMs). At each step, a decision-making
agent observes the current
dataset, model, evaluation results, and execution log, and then automatically selects an appropriate action to improve the model. This removes the need for a predefined pipeline and enables the
agent to self-correct by revisiting earlier subsystems when new failures arise. We evaluate this approach on a solid electrolyte interphase (SEI) system with multiple components and interfaces. These results suggest that LLM-based multi-
agent systems are a promising direction for automating MLIP development and making it more accessible to non-experts.
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Statistical Mechanics
Matrix-Product Belief Propagation for continuous-state-space variables
Federico Florio and Alfredo Braunstein
Computation of observables in discrete
stochastic, possibly conditioned, dynamics over large sparse networks is fundamental for a myriad of applications. The
Matrix-Product Belief Propagation method allows a semi-analytical estimation of such observables in tree-like networks with a controlled error that depends on the bond dimension, that is the dimension of the employed square
matrices. Its computational cost is linear in the time horizon and the network size for a large family of models with discrete degrees of freedom. Here, a generalization of this method to models with continuous or mixed continuous/discrete degrees of freedom is presented, using a tunable expansion in a
Hilbert function basis. For a wide class of models, the computational cost of the method is linear in the network size with a prefactor that depends on the basis size and the bond dimension. The method's efficacy is demonstrated by employing a
Fourier basis for a mixed continuous/discrete representation of the Kinetic Ising dynamics with real-valued random couplings, where intermediate "local fields" are treated as continuous. The accuracy of the method is verified via comparison with Monte Carlo simulations. For this model, we calculate time auto-correlations, time
evolution of energy and magnetization, and finally we estimate the large deviation function of the magnetization at a given future time.
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Soft Condensed Matter
A Brownian dynamics study of liquid-liquid phase separation in multi-scale chromatin networks
Léa Beaulès, Judith Miné-Hattab, Pierre Illien et al. (+1 more)
In living
cells,
proteins involved in specialized biochemical functions are often spatially organized within biomolecular condensates. Increasing evidence suggests that some of these condensates, including DNA repair condensates, emerge through
liquid-
liquid phase separation (LLPS). In the
nucleus, however, condensates form within a highly heterogeneous environment composed of chromatin fibers, RNA, and additional
protein scaffolds such as PAR chains, all of which may interact with phase-separating
proteins. Moreover, condensate formation is frequently associated with specific chromatin conformations; for instance, loop extrusion has been proposed as a mechanism promoting DNA repair condensates. Here, we investigate how the surrounding fibrous environment controls the morphology and spatial organization of phase-separated condensates. Using Brownian dynamics simulations of minimal models combining Lennard-Jones particles with fixed fibrous substrates, we examine the respective roles of local fiber geometry and large-scale network organization, reflecting the multiscale architecture of chromatin. We show that
protein-fiber interactions strongly influence droplet positioning relative to the substrate, in a manner analogous to wetting transitions in soft condensed matter systems. Both local
geometric constraints and global network organization markedly affect droplet size, morphology, and multiplicity. In addition, large-scale asymmetries in fiber organization can induce robust spatial localization of the dense phase. Our results thus highlight how multiscale structural heterogeneity of the
nuclear environment can regulate the emergence and organization of biomolecular condensates.
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All authors Léa Beaulès, Judith Miné-Hattab, Pierre Illien, Vincent Dahirel
Materials Science
Probing the Chirality of Trigonal Selenium and Tellurium by Spin and Orbital Hall Effects
Yuting Xiong, Yingjie Hu, Wei Ren et al. (+1 more)
Chiral crystals exhibit enantiomer-dependent transport phenomena that generate pure
spin or orbital currents, while the handedness sensitivity of
spin and orbital
Hall conductivities (SHC/OHC) remains insufficiently understood. Using first-principles calculations, we demonstrate that trigonal selenium and tellurium – prototypical
chiral semiconductors – exhibit opposite signs of the SHC/OHC tensor elements $\sigma_{yx}^{S_y}$ and $\sigma_{yx}^{L_y}$ between their left- and right-handed enantiomers. This behavior originates from the mirror operation relating the two structures, described by space groups $P3_221$ (left-handed) and $P3_121$ (right-handed). Although both enantiomers share identical band structures and four nonzero SHC/OHC tensor components, $\sigma_{yx}^{S_y}$ and $\sigma_{yx}^{L_y}$ reverse sign due to the antisymmetric transformation of the
spin/orbital Berry
curvature under the $M_{xy}$ mirror operation. More generally, for mirror-related enantiomorphic structures, selected SHC/OHC tensor components can exhibit
symmetry-governed sign reversal. For trigonal Se and Te, the calculated signs of these components can be directly correlated with the left- and right-handed structures under the chosen coordinate convention. These results clarify the
symmetry origin of handedness-dependent SHC/OHC and suggest a possible route for correlating measurable SHC/OHC signals with structural handedness in specific
chiral materials.
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All authors Yuting Xiong, Yingjie Hu, Wei Ren, Heng Gao
Materials Science
Accurate computation of the electron-phonon interaction contribution to the total energy
Shilpa Paul, Mogadalai Pandurangan Gururajan, Amrita Bhattacharya et al. (+1 more)
The standard
Hamiltonian of a coupled electron-
phonon system is based on second-order perturbation theory. The EPI contribution in the standard
Hamiltonian consists of two terms, the EPI contribution to the band-structure energy and the partial-Fan-Migdal (FM)-occupied contribution. Within the non-adiabatic approximation, we derive a new expression for the partial-FM-occ contribution and show that it has the structure of a higher-order term, and not a second-order term. Along similar lines, we derive new expressions for the computation of the partial-FM-occ term. The new expressions for the partial-FM-occ term must be preferred over the standard expressions, in theoretical and computational studies, because they incorporate the complete physics underlying this term. Unlike the EPI contribution to individual eigenstates, the EPI contribution to the total energy must be computed in the non-adiabatic approximation for all materials, Infra-red (IR) active and IR-inactive. We report the computation of the standard
Hamiltonian, for the first time, for Carbon polymorphs (diamond and hexagonal lonsdaleite) by including the EPI contribution to the total energy. This is the most accurate ab initio total energy reported till date. The present work also opens the way to compute the ab initio free-energy more accurately at finite temperatures by including the EPI contribution.
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All authors Shilpa Paul, Mogadalai Pandurangan Gururajan, Amrita Bhattacharya, Tiramkudlu R. S. Prasanna
Materials Science
High-Pressure Crystal Structure Database
Zhenyu Wang, Qingchang Wang, Junwen Duan et al. (+7 more)
High-pressure research is a productive route to new structures and emergent properties. However, crucial high-pressure structural information remains highly fragmented across individual publications and heterogeneous computational repositories. This fragmentation creates a major bottleneck for data-driven materials design. To bridge this gap, we introduce the High-Pressure
Crystal Structure Database (HPCSD), a traceable, pressure-resolved repository that integrates experimental and theoretical high-pressure structures. HPCSD is constructed from two complementary data streams: elemental high-pressure phases and a searchable configuration space of stable and metastable phases generated via CALYPSO
crystal structure prediction. To ensure rigorous comparability, all retained structures underwent re-optimization under a unified density functional theory (DFT) framework , with continuous enthalpy curves systematically generated specifically for the elemental phases across their stability fields. The initial release encompasses 77,346 consistently evaluated structural entries spanning 89 elements. An analysis reveals that pressure-induced polymorphism is ubiquitous and exhibits pronounced family-dependent trends. Structural diversity is strongly influenced by an element's electronic adaptability , with the greatest structural complexity emerging at intermediate rather than highest pressures. By providing standardized, reusable, and rigorously evaluated high-pressure structural data, HPCSD establishes a robust infrastructure to accelerate experimental phase identification, facilitate cross-study thermodynamic comparisons, and support the development of machine-learning interatomic potentials and generative models for high-pressure systems.
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All authors Zhenyu Wang, Qingchang Wang, Junwen Duan, Heng Ge, Xiaoshan Luo, Pengyue Gao, Wei Zhang, Jian Lv, Yanchao Wang, Yanming Ma
Mesoscale and Nanoscale Physics
Periodic Behavior of Topology in Graphene with Nanohole Array
Yong-Cheng Jiang, Xing-Xiang Wang and Xiao Hu
We derive a way to diagnose band
topology for
graphene with triangular and/or honeycomb array of nanoholes directly from the
lattice constant of superstructure $m\sqrt{3}\times m\sqrt{3}$ with integer $m$. Taking into account the $C_{6v}$ crystalline
symmetry respected by nanoholes and their array, we demonstrate that nontrivial
topology appears periodically with $m$ with period two (six) for triangular (honeycomb) array. These behaviors are verified by Wyckoff positions of Wannier centers and parity index of valence bands at high-
symmetry points in Brillouin zone. The results provide a convenient guide for material design of topological electronic states based on
graphene derivatives.
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Materials Science
Shaping Maximally Localized Wannier Functions via Discrete Adiabatic Transport
Yuji Hamai and Katsunori Wakabayashi
Maximally localized Wannier functions (MLWFs) are conventionally constructed by iteratively minimizing a spread functional over a high-dimensional gauge landscape. In this work, we present a non-variational constructive
algorithm that unifies gauge smoothing and the
eigenvalue problem of the projected position operator into a single deterministic framework. We demonstrate that discrete adiabatic transport across band degeneracies emerges naturally as an integral part of the solution procedure for the position eigenvectors. In this transport-aligned gauge, the Bloch overlaps exhibit an approximately linear phase dependence, allowing the Wannier centers to be extracted via deterministic fixed-point iterations and self-consistent updates rather than spread-functional minimization.
Benchmark calculations for one- and two-dimensional systems yield spreads and orbital shapes in good agreement with standard minimization schemes. Furthermore, this analytical approach transparently isolates the physical origin of the $\mathcal{O}(L)$ mesh-dependent spread scaling ($L$ being the boundary seam resolution) observed in
graphene, demonstrating that it is an intrinsic
geometric manifestation of non-commuting projected position operators forcing finite gauge defects to accumulate along a one-dimensional boundary seam.
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Materials Science
Strain-Enhanced Hydrogen Evolution, Electrical, Optical, and Thermoelectric Properties of the Multifunctional 2D CrSi2N4 Monolayer
Rao Uzair Ahmad, Fahd Sikandar Khan and Nasir Javed
First-principles density functional theory (DFT) is employed to evaluate the structural, electronic, optical, thermoelectric, and electrocatalytic properties of monolayer CrSi2N4. Its symmetric N-Si-N-Cr-N-Si-N septuple-layer structure exhibits dynamic, thermal (300 K), and mechanical stability, supported by a -8.76 eV/atom cohesive energy. PBE and HSE06 functionals reveal an indirect bandgap of 0.58 eV and 2.16 eV, respectively, driven by localized Cr-3d and N-2p states. The monolayer features 15.57 static dielectric constant and maximum absorption coefficients of 0.9 X 10^6 cm-1 (visible) and 1.4 X 10^6 cm-1 (deep-UV). Semiclassical Boltzmann calculations predict an outstanding room-temperature n-type thermoelectric power factor of 3.5 x mW/mK2. For hydrogen
evolution (HER), the basal plane yields a baseline hydrogen adsorption free energy ({\Delta}GH) of 1.05 eV at the N-site. Applying +5% expansive biaxial strain improves HER kinetics, reducing {\Delta}GH to 0.46 eV. Thus, CrSi2N4 is a resilient, tuneable candidate for waste-heat recovery, photodetectors, and sustainable electrocatalysis.
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Materials Science
From spin splitting to projected mass in altermagnetic Chern matter
Gyanti Prakash Moharana
Altermagnetic
spin splitting alone does not define Chern matter. The relevant object is the exchange mass projected onto
Hall-active surface, valley, orbital or interface sectors. We formulate this projected-mass criterion for compensated
magnetic topology. The resulting two-channel $(C,\mathcal{A})$ diagnostic separates hidden compensated
Hall responses from additive altermagnetic
quantum anomalous
Hall phases in a global insulating gap. It also guides interface, thickness and materials design strategies.
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Materials Science
Chiroptical Ternary Entropy Harvesting from Self-Assembled Block Copolymer Nanopatterns
Wookjin Jung, Serin Jeong, Kyulim Kim et al. (+3 more)
Nanoscale fabrication inevitably produces local stochasticity that is commonly treated as a defect, but can instead be harnessed as a material resource for information security. Here we report a chiroptical platform for ternary
entropy harvesting based on
stochastic Au nanopatterns formed by block copolymer self-assembly. By transducing fabrication-induced
stochastic microstates into handedness-dependent optical responses through chiroptical mapping, our platform enables native ternary digitization rather than conventional binary encoding, allowing physically harvested ternary random sequences to be used for key generation. This raises the information density to log2(3) = 1.585 bits per trit, approximately 58.5% higher than the binary limit, enabling more
entropy to be harvested from a limited physical footprint. The harvested outputs exhibit near-balanced symbol populations, negligible spatial and inter-sample correlations, Shannon
entropy approaching the ternary ideal, and resistance to statistical and machine-learning-based prediction. These results establish self-assembled chiroptical nanostructures as a scalable platform for cryptographic key generation, secure edge devices, and distributed Internet-of-Things platforms.
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All authors Wookjin Jung, Serin Jeong, Kyulim Kim, Dongkyu Lee, Sang Ouk Kim, Jihyeon Yeom
Disordered Systems and Neural Networks
Quantum Criticality in Monolayer Amorphous Carbon
Rejaul SK, Hanning Zhang, Artem K Grebenko et al. (+15 more)
Amorphous solids represent the extreme limit of broken translational
symmetry, in which the absence of long-range order removes well-defined
crystal momenta and invalidates the Bloch description of electronic states. Monolayer amorphous carbon (MAC) has emerged as a unique realization of a strictly two-dimensional (2D) amorphous
lattice defined by a structurally contiguous but topologically disordered $sp^2$-bonded random network devoid of any defined long-range
crystal symmetry. From atomic-resolution measurements of multifractal wavefunctions, we show that disorder in MAC effectively localizes the low-energy part of the electronic spectrum but retains an extended critical-like state near the band centre ($E\sim 0$). We
conjecture that this state is protected from topological disorder by remnant
chiral symmetry surviving within the continuous random network, described by a Wess-Zumino-Witten (WZW) topological term. Near criticality, we verify the multifractal scaling relation $\eta = -\Delta_2$, providing quantitative agreement between independently measured spatial correlation decay and multifractal scaling exponents. Our results are confirmed by atomistic tight-binding calculations that closely mirror the multifractal scaling near $E\sim 0$. Our results establish MAC as the first strictly 2D amorphous electronic system to exhibit Anderson criticality driven purely by topological disorder
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All authors Rejaul SK, Hanning Zhang, Artem K Grebenko, Arsen Herasymchuk, Ranjith Shivajirao, Hongji Zhang, Abee Nelson, Zheng Jue Tong, Gagandeep Singh, Naoto Kimiuchi, Yuta Sato, Kazutomo Suenaga, Chee Tat Toh, Rudolf A Romer, Shaffique Adam, Oleg V. Yazyev, Barbaros Ozyilmaz, Bent Weber