Soft Condensed Matter
Meso-scale modeling of cohesive cavitation in polymer networks
Saleh Assadi, Zachary T. White, Fay Salmon et al. (+6 more)
Cavitation influences the failure of elastomers and soft adhesives, but connecting its microscopic initiation to subsequent cavity growth remains challenging. Here, we develop a discrete mesoscale framework that combines finitely extensible, breakable strands with local van der Waals interactions to examine how cohesion and network heterogeneity transform distributed dilation into localized damage. In the simulations, local cohesive instability produces a network-scale precursor whose subsequent expansion is coupled to strand stretching and rupture. Cohesive strength and intrinsic defect size govern the critical hydrostatic tension, while cohesion also controls the number and spatial distribution of cavities. Under confined loading, decreasing the layer thickness promotes multiple cavities and distributed strand rupture, extending the load-bearing response and increasing the critical work density of rupture. An energetic interpretation based on the thickness dependence of the crack-driving force connects these observations to competition between additional cavity nucleation and propagation of existing damage. The results link local cohesive instability to the collective
evolution of cavities and rupture in disordered
polymer networks.
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All authors Saleh Assadi, Zachary T. White, Fay Salmon, Nitin Hansoge, Zhuonan Liu, Victor Crespo-Cuevas, Jason Clapper, Nikolaos Bouklas, Franck J. Vernerey
Soft Condensed Matter
Machine-learned topological transport of magnetic colloids
Sebastian Wohlrab, Aneena Rinu Perayil, Piotr Kuświk et al. (+6 more)
By modulating the orientation of a uniform
magnetic field it is possible to transport
magnetic microparticles above
magnetic patterns. In periodic patterns, driving control loops that wind around special orientations, which are dictated by the
symmetry of the pattern, induce transport by one unit
cell. The transport is topologically protected with trajectories controlled by the winding numbers of the control loop around the special orientations. In non-periodic patterns, the special orientations are position dependent, precluding a global characterization of the transport using a small set of winding numbers. We use here a reinforcement learning
agent trained with Brownian dynamics simulation data that uses the local environment of the
magnetic pattern to decide an action over the control loop. The
agent autonomously discovers topological transport protocols directly from the particle response without prior characterization of the
magnetic potential landscape. An
agent trained solely on a complex non-periodic pattern directly generalizes to completely unseen periodic, quasicrystalline, and disordered substrates. Moreover, the
agent dynamically adjusts the control loop to transport particles across
lattice defects and to counterbalance external drift forces that would cause static topological loops to fail. By adding a pathfinding
algorithm to the model, we additionally achieve simultaneous, independent transport of multiple identical colloids along different on demand trajectories. We demonstrate that the control loops can be directly transferred to an experimental setup to successfully drive
magnetic microparticles across a non-uniform
magnetic thin film.
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All authors Sebastian Wohlrab, Aneena Rinu Perayil, Piotr Kuświk, Maciej Urbaniak, Feliks Stobiecki, Arne J. Vereijken, Arno Ehresmann, Thomas M. Fischer, Daniel de las Heras
Soft Condensed Matter
Skyrmion gears: translation-to-rotation conversion of skyrmion clusters along periodic substrates
N. P. Vizarim, C. J. O. Reichhardt and C. Reichhardt
We investigate how the translational motion of a compact skyrmion cluster can be converted into collective rotation through interactions with a periodic obstacle substrate. Using an effective particle model, we consider a seven-skyrmion cluster driven along a one-dimensional array of repulsive obstacle sites. For suitable obstacle spacings and interaction strengths, repeated interactions with the substrate produce coherent clockwise or counterclockwise rotation, giving rise to gear-like cluster dynamics. We characterize these states using the translational velocity, Hall angle, angular velocity, structural deformation, and a dimensionless gear ratio that relates cluster rotation to motion over the substrate periodicity. Dynamical phase diagrams identify rotating, nonrotating, wall-guided, transverse, and deformed regimes. We further show that coherent rotation persists in the overdamped limit, demonstrating that the conversion mechanism does not require an intrinsic Magnus force and may therefore extend to other driven cluster systems, including colloidal assemblies. These results provide a simple route for controlling collective rotation through structured substrates.
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Soft Condensed Matter
First-fracture kinetics in periodic chains: from free-energy landscapes and dynamical recrossing to absolute rates
Aristotelis P. Sgouros
The nearly collinear configuration of highly stretched
polymer chains before fracture motivates one-dimensional models. At fixed extension, stretching one bond redistributes length among the others, coupling rupture to the whole chain. In this work, I develop a framework for fracture-healing rates in periodic Morse chains, combining deterministic theories,
equilibrium simulations and a quasi-deterministic approach using
equilibrium fluxes and barrier-top trajectories. Constrained-partition calculations closely reproduce simulated populations and intact-state tensions. An intact-reservoir potential of mean force (PMF) supplies the first-fracture surface probability, while recrossing corrects the attempt flux without a rate-fitted prefactor. Independent rate tests identify an operational chain-length boundary for accurate two-state kinetics; failed-return durations decrease relative to population relaxation as chains grow. Kramers-Grote-Hynes (KGH), nonlinear reactive-flux and
equilibrium rates show excellent agreement in this regime. KGH predicts rates away from coexistence and a chain-dependent local activation length dominated by the barrier response. Rates decrease approximately exponentially before declining more gently for longer chains: barrier growth dominates, additional fracture sites partly compensate, and transmission varies more weakly. Beyond coexistence, long chains can fracture practically irreversibly because healing becomes too rare to observe. Projected committor crossings, where the configuration-averaged probability of reaching the fractured core first is one half, lie near site-PMF maxima, although configurations at equal bond length retain different fracture probabilities. Multiple fractures remain negligible near coexistence through at least $N=50$. The framework could supply state-dependent rates to mesoscopic fracture models of
polymer networks.
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Soft Condensed Matter
Self-phoresis on a one-dimensional periodic domain
Leah Anderson and David S. Dean
We study the spontaneous motion and collective dynamics of self-phoretic particles on a one-dimensional periodic domain. The particles act as localized chemical sources (of a particle-dependent strength) of a field and the particles themselves respond to the gradients of the field they generate (with a particle-dependent phoretic mobility). The chemical field itself diffuses and evaporates. For a single particle, we derive the exact threshold for spontaneous propulsion and establish the emergence of stable constant-velocity states near onset through a supercritical pitchfork bifurcation. We then consider an active source coupled to a non-emitting tracer and determine the conditions for slipping and stable phase-locked motion. For two mutually coupled sources, the stationary antipodal configuration can lose stability through either a pitchfork or a Hopf bifurcation, depending on the relative source strengths and phoretic mobilities. We determine the competing instability thresholds and compare them with direct numerical simulations of the coupled particle-field equations. Beyond onset, the resulting translating and oscillatory states provide qualitative counterparts to modes of motion observed experimentally for camphor disks in annular water channels. These results connect the onset of individual propulsion, tracer entrainment, and collective motion within a common analytically tractable framework.
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Soft Condensed Matter
Impact of shear and dilational membrane viscosities on capsule shape and dynamics under shear flow: a theoretical study
Paul Regazzi and Marc Leonetti
In artificial (micro)capsules or
cells such as red blood
cells for example, the two-dimensional (2D) rheology of the membrane (or the shell) is viscoelastic and not only elastic. The deformation and inclination of such a capsule are theoretically studied under shear and extensional flows. The membrane mechanics is described by the Kelvin-Voigt model: the 2D dissipation with the Boussinesq-Scriven law associated to specific dilational and shear Boussinesq numbers $Bq_d$ and $Bq_d$ respectively while the elastic constitutive law is either Hookean, strain-softening (neoHookean) or strain-hardening (Skalak). The dynamics depends on the elastic capillary number $Ca$, the Poisson ratio (or $C$ in Skalak law), the viscosity ratio $\lambda$, the nonlinearities included in the constitutive law and both boussinesq numbers. Three dynamics are identified in the limit of weak deformations: a tank-treading motion in the limit of small elastic capillary number with a characteristic time depending on $\lambda$, $Bq_s$ and $Bq_d$, an oscillation without any elasticity and a damped oscillation leading to a tank-treading motion in the limit of large Boussinesq numbers. In all cases, both shear and dilational 2D dissipations contribute differently leading to non-trivial results. In the case of a Skalak law with $C=1$, $Bq=Bq_s=Bq_d$ and $Bq>>\lambda$, the deformations in the limits $Ca<<1$, $Bq=O(1)$ and $Ca=O(1)$, $Bq>>1$ determined in the seminal work of \cite{barthes1985role} are recovered.
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Soft Condensed Matter
Colloid-Colloid Interactions Impact Network Morphology of Confined Colloidal Drying Patterns
Andreas Andersen Hennig, Natalia Kizilova, Ilaria Beechey-Newman et al. (+1 more)
Colloidal suspensions that are confined between two closely spaced plates and left to evaporate slowly form maze-like labyrinth patterns in the final stage of evaporation. The fingers in these patterns form bifurcations and occasionally loops, which we may quantify with a skeletonization method. We compare drying patterns formed with two different salt concentrations in the droplet which changes the screening length and therefore the effective colloid interactions. We find that the junctions generally follow Murray's law for optimal transport networks, and that the typical bifurcation angles peak around 53. Screened droplets additionally show more loopy networks, and is characterized by bands of transversal fingers before merging into a central non-fingering colloidal aggregate. Our observations suggest that colloid-colloid interactions can strongly influence the large-scale
topology of the pattern while leaving the local geometry of the individual fingers unchanged.
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All authors Andreas Andersen Hennig, Natalia Kizilova, Ilaria Beechey-Newman, Erika Eiser
Soft Condensed Matter
Solubility of poorly soluble species in bulk and nanopores from grand-canonical Wang-Landau sampling
Russell Kajouri, Adyant Agrawal, Philipp Stärk et al. (+2 more)
Poorly soluble species can have mean populations below one in small systems such as nanopores. In this regime, the grand-potential minimum, which identifies the most probable particle number, differs from the ensemble-averaged solute loading. We use grand-canonical Wang-Landau sampling (GCWLS) to calculate the density of states $\Omega(N_\mathrm{A}, N_\mathrm{B})$ for a binary Lennard-Jones mixture of solute B in solvent A, both in bulk and in slit pores. One set of GCWLS simulations gives ensemble averages over a range of chemical potentials, whereas conventional grand-canonical Monte Carlo (GCMC) simulation requires a separate simulation at each state point. Independent GCMC simulations confirm the GCWLS ensemble averages. The solvent number distribution is nearly Gaussian, whereas the dilute solute distribution is skewed and Poisson-like. The most probable solute number therefore lies below the ensemble-averaged loading $\langle N_\mathrm{B}\rangle$ and is zero whenever $\langle N_\mathrm{B}\rangle<1$. Reading the solute loading from the grand-potential minimum underestimates it and can falsely indicate that no solute is present. Defining the oversolubility as $\mathcal{O}_\mathrm{B}=x_\mathrm{B}^{\mathrm{conf}}/x_\mathrm{B}^{\mathrm{bulk}}$, where $x_\mathrm{B}$ is the solute mole fraction, we find $\mathcal{O}_\mathrm{B}\approx12$ in a pore of 3.5 particle diameters width when both wall interactions are repulsive. Adding wall-solute attraction moderately raises it to $\approx13$, whereas wall-solvent attraction lowers it to $\approx3.4$. This comparison shows that the wall-solvent interaction controls most of the enhancement. As the pore widens, $\mathcal{O}_\mathrm{B}$ decreases toward unity. In bulk and in nanopores alike, the solubility of poorly soluble species should be obtained from ensemble averages rather than from grand-potential minima.
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All authors Russell Kajouri, Adyant Agrawal, Philipp Stärk, Alexander Schlaich, Christian Holm
Soft Condensed Matter
Activity-Induced Structural and Dynamical Heterogeneity in Colloidal Gels
Santu Nath, Sudipta Mandal and Smarajit Karmakar
Active gels are intrinsically non-
equilibrium materials whose structural and dynamical heterogeneity emerges from the interplay of attractive interactions, thermal fluctuations, and self-propulsion. We investigate a model active gel, simulated using large-scale Brownian dynamics simulations, to explore the effects of temperature $T$, active force strength $f_0$, persistence timescale $\tau_p$, and active particle concentration $\rho_a$. We characterize the structure of the evolving gel network through morphological analysis, while dynamical changes are quantified by the relaxation timescale and dynamical heterogeneity (DH). We show that an optimal choice of activity parameters yields a percolating gel network with faster gelation and larger voids and clusters, enhancing mechanical stability. Conversely, the structural relaxation timescale and DH decrease with increasing activity, indicating enhanced particle rearrangements and reduced spatial correlations of mobile and immobile regions. An effective temperature ($T_\text{eff}$) framework for colloidal gels maps structural quantities and relaxation timescales in an active gel onto those of a passive gel. More interestingly, the growth of DH with increasing swim force can also be described by the same effective-temperature framework, in stark contrast to observations in active glasses. Our findings show that, in colloidal gels, temperature and active force compete, giving rise to similar structural ordering and, consequently, similar DH at the same $T_\text{eff}$. These findings highlight the crucial role of structural ordering in governing DH in active colloidal gels, as compared to active glasses.
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Soft Condensed Matter
Thermal softening of the yield stress in glasses with different stability
Tianze Wan and Ludovic Berthier
The yielding of amorphous solids has been extensively studied in the athermal limit, but the influence of thermal fluctuations is much less understood, in particular for glasses of different stability. Using molecular dynamics simulations of a model glass where the swap Monte Carlo
algorithm can be employed, we study the yield stress at finite temperature and shear rate, both in steady flow and at shear start-up, over a broad range of glass stability. Thermal fluctuations soften both the dynamic yield stress in steady state and the start-up yield stress. In all cases, the temperature dependence is compatible with the $T^{2/3}$ law expected for thermally activated yielding near a saddle-node instability, with no systematic dependence of the exponent on stability or shear rate. Extrapolations to zero temperature recover the athermal yield stresses. The amplitude of the softening at start-up, by contrast, depends strongly on stability: highly stable glasses are much less sensitive to temperature than poorly annealed ones. A description of yielding at finite temperature must therefore account explicitly for the stability of the glass.
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Soft Condensed Matter
Derjaguin-corrected Kelvin equation for finite open slits
Alexandr Malijevský
We formulate a Derjaguin-corrected Kelvin equation for phase transitions in finite open slits. In such pores, capillary condensation is modified by the finite wall length because the condensed phase is bounded by two terminal menisci pinned at the slit ends. Starting from the macroscopic generalized Kelvin equation, we introduce a scaling approximation which replaces the implicit edge-contact-angle condition by a closed analytic expression while preserving the exact limiting behaviours. We then incorporate mesoscopic wetting-layer contributions into the finite-slit free-energy balance. The single-wall contribution naturally separates into a planar Derjaguin term and a residual finite-length correction controlled by the competition between the wall length $H$ and the parallel correlation length $\xi_\parallel$. The resulting equation reduces to the standard Derjaguin-Kelvin equation for infinitely long slits and to the macroscopic finite-slit Kelvin equation when adsorbed layers are absent. Explicit forms are derived for long-ranged dispersion forces and for short-ranged forces. The theory is tested using classical density functional theory for finite slits with attractive Lennard-Jones walls and hard walls, corresponding respectively to capillary condensation and its drying analogue, capillary evaporation. The Derjaguin-corrected theory substantially improves on the purely macroscopic prediction, capturing both the correct infinite-slit limit and the observed dependence on wall length. For the short-ranged hard-wall system, the agreement with DFT remains nearly quantitative even for very narrow slits.
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Soft Condensed Matter
Dynamical-state switching controls active microrod navigation in porous media
Ana Cazorla, Maria L. Jimenez, Raul A. Rica-Alarcon et al. (+2 more)
Adaptive search and travel strategies enable biological swimmers to explore complex environments, but remain difficult to encode in minimal synthetic microswimmers. Here, we unveil multiple dynamical and orientational states of rod-like Janus microswimmers actuated via electric fields: planar active, oriented chiral and persistent rods. We discover a hidden dynamical state after pre-orienting them, which allows us to switch on demand from strong chiral to persistent motion. We harness this phenomenological orientation and chirality switch for exploration in microstructured porous arrays. Here, strong chirality promotes local scanning but drives circular trapping and poor net displacement, whereas the pre-aligned dynamical state enables efficient obstacle sorting, and trap escape. Comparing experiments with simulations of active Brownian particles in the very same experimentally-extracted obstacle geometries, we quantify navigation efficiency via first-passage time statistics, revealing how chirality tuning optimizes the trade-off between local exploration and long-range transport.
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All authors Ana Cazorla, Maria L. Jimenez, Raul A. Rica-Alarcon, Carla Fernandez-Rico, Laura Alvarez
Soft Condensed Matter
Defining Thixotropy
Yogesh M. Joshi and Ronald G. Larson
Originally coined 100 years ago to represent a shear-reversible sol-gel transition, the range of the term "thixotropy" has gradually expanded to encompass time-dependent changes in viscosity. Since this risks confusing "thixotropy" with ordinary nonlinear viscoelastic behavior, in this work we seek simple, historically faithful, quantifiable, and experimentally testable definitions of "thixotropy" that avoid this confusion. By analysing both historical tradition and published experimental data, we arrive at three complementary definitions. Definition 0 provides an idealized, purely inelastic reference useful primarily for recognizing thixotropy in a constitutive equation. Definitions 1 and 2, which are more practical, require, respectively, unusually large strains to reach steady state, and unbounded growth of the material relaxation time during rest. Definition 1 can apply in either shear-rate or stress-controlled modes, with the latter encompassing the so-called "viscosity bifurcation." These criteria are tested across diverse materials that we identify as thixotropic based on their responses clearly exceeding their viscoelastic reference scales. The framework is deliberately phenomenological and does not require specific microscopic mechanisms, allowing diverse materials to be described within a common rheological
language, as is typical for rheological terminology. We believe that these definitions provide a practical framework for assigning thixotropy a more definite place in rheological taxonomy.
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Soft Condensed Matter
Self-Avoidance Governs Re-entrant Coil-Globule Transition of Inertial Active Brownian Ring Polymers
Rakesh Palariya, Arindam Panda, Roland G. Winkler et al. (+1 more)
Active matter systems composed of self-propelled entities exhibit a wide range of out-of-
equilibrium phase behaviors and collective dynamics. Assemblies of active particles, e.g., in a linear structure, are particularly interesting, as they exhibit an intriguing interplay between activity and geometrical restrictions due to self-avoidance and entanglements. Using Langevin dynamics simulations of an active Brownian ring
polymer with translational and rotational inertia, we uncover an inertia-driven re-entrant coil-globule transition in the absence of any attractive interactions. We show that rotational inertia plays a paramount role, leading, in the globular state, to spontaneous, nonzero, radially outward polarization of the active forces. Self-avoidance and entanglements break the rotational
symmetry of active beads and effectively stabilize the globular states. The transition becomes increasingly sharp with increasing rotational inertia, yielding highly compact globular conformations at intermediate activities, whereas at high activity the
polymer re-expands into a coil state. Scaling of the radius of gyration reveals crossovers from self-avoiding, phantom-like to compact-globular structures. Further, rotational inertia enhances transport properties, with an intermediate activity-induced Rouse-type bead
diffusion and a long-time
diffusion coefficient displaying a power-law dependence on the moment of inertia. Our study establishes a purely inertia-induced mechanism for controlling the collapse of active
polymers, arising from spontaneous active-force polarization and self-avoidance.
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All authors Rakesh Palariya, Arindam Panda, Roland G. Winkler, Sunil P Singh
Soft Condensed Matter
Length-scale dependence of collective time reparameterization in swap dynamics
Massimo Pica Ciamarra
Swap Monte Carlo dramatically accelerates the equilibration of deeply supercooled
liquids while preserving the
equilibrium Boltzmann distribution. Recent work has argued that swap and other accelerated
algorithms act by reparameterizing time: different dynamics follow the same slow relaxation process, but with different clocks. Here we test this idea in a continuously polydisperse glass former. We confirm that mean collective overlaps satisfy an approximate time reparameterization, in agreement with earlier results. However, the associated clock depends systematically on the collective probe length and on the relaxation stage. Thus the observed collective collapse does not define a unique, observable-independent material time. Over the numerically accessible $\alpha$-relaxation regime, swap changes not only the rate of relaxation, but also its length-scale dependence. The resulting collective reparameterization is therefore only approximate and does not establish an exact dynamical equivalence between swap and reference relaxation.
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Soft Condensed Matter
Deformation-induced spectral softening drives phase separation on non-spherical membranes
Avraham Moriel and Howard A. Stone
Models of
curvature-driven membrane sorting couple composition directly to membrane bending elasticity. Here we show that shape deformations can destabilize a homogeneous state without this composition-dependent mechanical coupling. We analyze the eigenspectrum of the Laplace-Beltrami operator on deformed spheres analytically, and verify it numerically. As the deformation amplitude increases, the spectral degeneracy breaks, and the lowest nonzero
eigenvalue decreases substantially. Using Cahn-Hilliard dynamics, we show that this
eigenvalue softening provides a purely
geometric route to phase separation.
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