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Friday 3 April

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Why is Regularization Underused? An Empirical Study on Trust and Adoption of Statistical Methods

Statistical practice does not automatically follow methodological innovation. Regularization methods, widely advocated to reduce overfitting and stabilize inference, are readily available in modern software, but are not consistently used by data analysts. We investigate this implementation gap in a large-scale empirical study of trust in, and acceptance of, regularization techniques, based on $N = 606$ data analysts. Drawing on measurement frameworks from technology acceptance research, we survey practitioners and embed a randomized experiment to test whether written recommendation of regularization methods increases trust or intended use. We find no evidence of such an effect. Instead, adoption intentions are strongly associated with analysts' perceptions of ease of implementation and practical benefit, such as improved bias control or interpretability. Perceived social norms also emerge as a central driver. These results indicate that uptake of statistical methodology depends less on formal recommendations than on usability, perceived utility, and community practice.
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All authors Konstantin Emil Thiel, Marléne Baumeister, Nicole Krämer, Andreas Groll, Markus Pauly, Magdalena Wischnewski

Machine Learning (Statistics)

Inversion-Free Natural Gradient Descent on Riemannian Manifolds

The natural gradient method is a central tool for statistical optimisation, but its broader application is hindered by the assumption of a Euclidean parameter space, the repeated estimation of the Fisher information matrix (FIM), and the computational cost of its subsequent inversion. This paper proposes an intrinsic, inversion-free natural gradient method for statistical models whose parameters lie on general Riemannian manifolds. Formulating statistical optimisation in this non-Euclidean setting allows for the natural enforcement of parameter constraints, the elimination of non-identifiable parameters, and the exploitation of geodesic convexity. Our algorithm is based on a moving approximation of the inverse FIM, which is maintained directly on the manifold. This approximation is efficiently updated with new score vectors using low-rank matrix identities. We prove almost-sure convergence rates of $O(\log s / s^\alpha)$ for the sequence of iterates, and a similar rate for the approximate FIM. A limited-memory variant with sub-quadratic storage complexity is further proposed for large-scale applications. We demonstrate the efficacy of our method on variational Bayes within the Bures-Wasserstein manifold, normalising flows on the Stiefel manifold, and reduced-rank logistic regression.
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Machine Learning (Statistics)

Rethinking Forward Processes for Score-Based Nonlinear Data Assimilation in High Dimensions

Data assimilation is the process of estimating the state of a dynamical system over time by combining model predictions with measurements. This task becomes challenging when the system is nonlinear and high-dimensional. To address this, score-based Bayesian filters have recently emerged. However, these methods still show unsatisfactory performance in certain cases, particularly under spatially sparse measurements. Such degradation stems from heuristic approximations of the likelihood score, whose errors can accumulate over time. This limitation arises because the methods simply adopt a classical forward process for generative modeling that transforms a data distribution toward a Gaussian distribution, which is independent of the measurement equation. Here, we propose a forward process tailored for filtering that transforms the system state toward the measurement space, enabling a theoretically sound formulation of the likelihood score. Based on this, we develop the Measurement-Aware Score-based Filter (MASF). We evaluate MASF on Kolmogorov flow, a high-dimensional fluid benchmark with up to $\mathcal{O}(10^5)$ dimensions, under diverse measurement operators, including nonlinear cases with a dimensional mismatch between the state and the measurements. MASF shows improved performance over existing score-based filters and ensemble-type Kalman filters. Notably, MASF achieves up to a $28.2\times$ wall-clock speedup compared with the baselines when using amortized pretraining. Our implementation is available at https://github.com/tcnllab-oss/masf.
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All authors Eunbi Yoon, Won Chang, Donghan Kim, Dae Wook Kim

Machine Learning (Statistics)

Lipschitz bounds for integral kernels

Feature maps associated with positive definite kernels play a central role in kernel methods and learning theory, where regularity properties such as Lipschitz continuity are closely related to robustness and stability guarantees. Despite their importance, explicit characterizations of the Lipschitz constant of kernel feature maps are available only in a limited number of cases. In this paper, we study the Lipschitz regularity of feature maps associated with integral kernels under differentiability assumptions. We first provide sufficient conditions ensuring Lipschitz continuity and derive explicit formulas for the corresponding Lipschitz constants. We then identify a condition under which the feature map fails to be Lipschitz continuous and apply these results to several important classes of kernels. For infinite width two-layer neural network with isotropic Gaussian weight distributions, we show that the Lipschitz constant of the associated kernel can be expressed as the supremum of a two-dimensional integral, leading to an explicit characterization for the Gaussian kernel and the ReLU random neural network kernel. We also study continuous and shift-invariant kernels such as Gaussian, Laplace, and Matérn kernels, which admit an interpretation as neural network with cosine activation function. In this setting, we prove that the feature map is Lipschitz continuous if and only if the weight distribution has a finite second-order moment, and we then derive its Lipschitz constant. Finally, we raise an open question concerning the asymptotic behavior of the convergence of the Lipschitz constant in finite width neural networks. Numerical experiments are provided to support this behavior.
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All authors Justin Reverdi, Sixin Zhang, Fabrice Gamboa, Serge Gratton

Statistical Methodology

High-dimensional Many-to-many-to-many Mediation Analysis

We study high-dimensional mediation analysis in which exposures, mediators, and outcomes are all multivariate, and both exposures and mediators may be high-dimensional. We formalize this as a many (exposures)-to-many (mediators)-to-many (outcomes) (MMM) mediation analysis problem. Methodologically, MMM mediation analysis simultaneously performs variable selection for high-dimensional exposures and mediators, estimates the indirect effect matrix (i.e., the coefficient matrices linking exposure-to-mediator and mediator-to-outcome pathways), and enables prediction of multivariate outcomes. Theoretically, we show that the estimated indirect effect matrices are consistent and element-wise asymptotically normal, and we derive error bounds for the estimators. To evaluate the efficacy of the MMM mediation framework, we first investigate its finite-sample performance, including convergence properties, the behavior of the asymptotic approximations, and robustness to noise, via simulation studies. We then apply MMM mediation analysis to data from the Alzheimer's Disease Neuroimaging Initiative to study how cortical thickness of 202 brain regions may mediate the effects of 688 genome-wide significant single nucleotide polymorphisms (SNPs) (selected from approximately 1.5 million SNPs) on eleven cognitive-behavioral and diagnostic outcomes. The MMM mediation framework identifies biologically interpretable, many-to-many-to-many genetic-neural-cognitive pathways and improves downstream out-of-sample classification and prediction performance. Taken together, our results demonstrate the potential of MMM mediation analysis and highlight the value of statistical methodology for investigating complex, high-dimensional multi-layer pathways in science. The MMM package is available at https://github.com/THELabTop/MMM-Mediation.
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All authors Tien Dat Nguyen, Trung Khang Tran, Cong Khanh Truong, Duy-Cat Can, Binh T. Nguyen, Oliver Y. Chén

Machine Learning (Statistics) · Cross-listed from cs.NE

Frame Theoretical Derivation of Three Factor Learning Rule for Oja's Subspace Rule

We show that the error-gated Hebbian rule for PCA (EGHR-PCA), a three-factor learning rule equivalent to Oja's subspace rule under Gaussian inputs, can be systematically derived from Oja's subspace rule using frame theory. The global third factor in EGHR-PCA arises exactly as a frame coefficient when the learning rule is expanded with respect to a natural frame on the space of symmetric matrices. This provides a principled, non-heuristic derivation of a biologically plausible learning rule from its mathematically canonical counterpart.
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Statistical Methodology

A Scale-Invariant Entropy Statistic for Distance Distributions

We introduce a family of scale-invariant entropy statistics derived from logarithmically aggregated distance distributions of point processes, with prime numbers serving as a motivating example. The construction associates to each finite configuration a scalar quantity encoding structural features of relative spacing while remaining insensitive to absolute scale. This work is intended as a methodological contribution rather than a source of new raw results.
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Statistical Methodology

Quotient-Based Posterior Analysis for Euclidean Latent Space Models

Latent space models are widely used in statistical network analysis and are often fit by Markov chain Monte Carlo. However, posterior summaries of latent coordinates are not canonical because the likelihood depends only on pairwise distances and is invariant under rigid motions of the latent space. Standard post hoc alignment can aid visualization, but the resulting summaries depend on an arbitrary reference configuration. We propose a quotient-based posterior analysis for Euclidean latent space models using the centered Gram map, which represents identifiable latent structure while removing nonidentifiability. This yields intrinsic posterior summaries of mean structure and uncertainty that can be computed directly from posterior samples, together with basic theoretical guarantees including canonicality, existence, and stability. Through simulations and analyses of the Florentine marriage network and a statisticians' coauthorship network, the proposed framework clarifies when alignment-based summaries are stable, when they become reference-sensitive, and which nodes or relationships are weakly identified. These results show how coherent posterior analysis can reveal latent relational structure beyond a single embedding.
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Machine Learning (Statistics)

State estimations and noise identifications with intermittent corrupted observations via Bayesian variational inference

This paper focuses on the state estimation problem in distributed sensor networks, where intermittent packet dropouts, corrupted observations, and unknown noise covariances coexist. To tackle this challenge, we formulate the joint estimation of system states, noise parameters, and network reliability as a Bayesian variational inference problem, and propose a novel variational Bayesian adaptive Kalman filter (VB-AKF) to approximate the joint posterior probability densities of the latent parameters. Unlike existing AKF that separately handle missing data and measurement outliers, the proposed VB-AKF adopts a dual-mask generative model with two independent Bernoulli random variables, explicitly characterizing both observable communication losses and latent data authenticity. Additionally, the VB-AKF integrates multiple concurrent multiple observations into the adaptive filtering framework, which significantly enhances statistical identifiability. Comprehensive numerical experiments verify the effectiveness and asymptotic optimality of the proposed method, showing that both parameter identification and state estimation asymptotically converge to the theoretical optimal lower bound with the increase in the number of sensors.
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Statistics Theory

Parameter Estimation of Incomplete Gamma Subordinators

In this paper, we estimate the parameters of InG, InG-$\epsilon$ and TInG subordinators which have been studied by Babulal et al (see \cite{babulal}). We have modified the method of moments technique to use fractional moments of the InG and InG-$\epsilon$ subordinator due to their infinite moments. For the TInG subordinator's parameter estimation, we have used the method of moments. We also compute the maximum likelihood estimator(MLE) for the parameter $\alpha$ of the InG and InG-$\epsilon$ subordinators using jump distribution of the process. We also discussed the asymptotic normality of MLE.
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Statistics Applications

Wasserstein-Based Test for Empirical Measure Convergence of Dependent Sequences

We develop Wasserstein-based hypothesis tests for empirical-measure convergence in stationary dependent sequences. For a known candidate invariant measure, $\mu$, we study the statistic $T_n=\sqrt{n}\,W_1(\hat\mu_n,\mu)$ and establish asymptotic level-$\alpha$ validity under the null, together with consistency under fixed alternatives. When the invariant measure is unknown, we derive the asymptotic law of the pairwise statistic $\sqrt{n}\,W_1(\hat\mu_n^{(i)},\hat\mu_n^{(j)})$ for independent trajectories and obtain a corresponding pairwise test, including Bonferroni control for multiple comparisons. To make this estimation feasible when the long-run covariance is unavailable in closed form, we introduce a finite-grid plug-in estimator and show that Gaussian critical values based on the estimated covariance consistently recover the corresponding oracle fixed-grid estimation. Simulation experiments in both linear and nonlinear dynamical settings illustrate the oracle and plug-in regimes, along with the resulting coverage probability and power.
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Statistical Methodology

Eligibility-Aware Evidence Synthesis: An Agentic Framework for Clinical Trial Meta-Analysis

Clinical evidence synthesis requires identifying relevant trials from large registries and aggregating results that account for population differences. While recent LLM-based approaches have automated components of systematic review, they do not support end-to-end evidence synthesis. Moreover, conventional meta-analysis weights studies by statistical precision without considering clinical compatibility reflected in eligibility criteria. We propose EligMeta, an agentic framework that integrates automated trial discovery with eligibility-aware meta-analysis, translating natural-language queries into reproducible trial selection and incorporating eligibility alignment into study weighting to produce cohort-specific pooled estimates. EligMeta employs a hybrid architecture separating LLM-based reasoning from deterministic execution: LLMs generate interpretable rules from natural-language queries and perform schema-constrained parsing of trial metadata, while all logical operations, weight computations, and statistical pooling are executed deterministically to ensure reproducibility. The framework structures eligibility criteria and computes similarity-based study weights reflecting population alignment between target and comparator trials. In a gastric cancer landscape analysis, EligMeta reduced 4,044 candidate trials to 39 clinically relevant studies through rule-based filtering, recovering all 13 guideline-cited trials. In an olaparib adverse events meta-analysis across four trials, eligibility-aware weighting shifted the pooled risk ratio from 2.18 (95% CI: 1.71-2.79) under conventional Mantel-Haenszel estimation to 1.97 (95% CI: 1.76-2.20), demonstrating quantifiable impact of incorporating eligibility alignment. EligMeta bridges automated trial discovery with eligibility-aware meta-analysis, providing a scalable and reproducible framework for evidence synthesis in precision medicine.
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Statistical Methodology

A comparison of methods for Poisson regression in the presence of background

This paper provides a statistical analysis of three common methods of regression for Poisson data in the presence of Poisson background, namely the joint fit with two parametric models for the source and the background, the use of a non-parametric model for the background known as the wstat method, and the regression with a fixed background. The non-parametric background method, which is a popular method for spectral data, is found to be significantly biased, especially in the low-count and background-dominated regimes. Similar conclusions apply to the fixed-background regression. The joint-fit method, on the other hand, simultaneously affords reliable hypothesis testing by means of the usual Cash statistic and unbiased reconstruction of source parameters. We also investigate the effect of non-parametric regression on the number of effective degrees of freedom by means of the Efron degree of freedom function. We find that the wstat method adds a significantly larger number of degrees of freedom, compared to the number of free parameters in the source model. The other two methods have a number of degrees of freedom consistent with the number of adjustable parameters, at least for the simple models investigated in this paper.
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All authors Massimiliano Bonamente, Vinay Kashyap, Xiaoli Li, Jelle de Plaa

Machine Learning (Statistics) · Cross-listed from cs.LG

Low-Rank Compression of Pretrained Models via Randomized Subspace Iteration

The massive scale of pretrained models has made efficient compression essential for practical deployment. Low-rank decomposition based on the singular value decomposition (SVD) provides a principled approach for model reduction, but its exact computation is expensive for large weight matrices. Randomized alternatives such as randomized SVD (RSVD) improve efficiency, yet they can suffer from poor approximation quality when the singular value spectrum decays slowly, a regime commonly observed in modern pretrained models. In this work, we address this limitation from both theoretical and empirical perspectives. First, we establish a connection between low-rank approximation error and predictive performance by analyzing softmax perturbations, showing that deviations in class probabilities are controlled by the spectral error of the compressed weights. Second, we demonstrate that RSVD is inadequate, and we propose randomized subspace iteration (RSI) as a more effective alternative. By incorporating multiple power iterations, RSI improves spectral separation and provides a controllable mechanism for enhancing approximation quality. We evaluate our approach on both convolutional networks and transformer-based architectures. Our results show that RSI achieves near-optimal approximation quality while outperforming RSVD in predictive accuracy under aggressive compression, enabling efficient model compression.
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Machine Learning (Statistics)

Transfer Learning for Meta-analysis Under Covariate Shift

Randomized controlled trials often do not represent the populations where decisions are made, and covariate shift across studies can invalidate standard IPD meta-analysis and transport estimators. We propose a placebo-anchored transport framework that treats source-trial outcomes as abundant proxy signals and target-trial placebo outcomes as scarce, high-fidelity gold labels to calibrate baseline risk. A low-complexity (sparse) correction anchors proxy outcome models to the target population, and the anchored models are embedded in a cross-fitted doubly robust learner, yielding a Neyman-orthogonal, target-site doubly robust estimator for patient-level heterogeneous treatment effects when target treated outcomes are available. We distinguish two regimes: in connected targets (with a treated arm), the method yields target-identified effect estimates; in disconnected targets (placebo-only), it reduces to a principled screen–then–transport procedure under explicit working-model transport assumptions. Experiments on synthetic data and a semi-synthetic IHDP benchmark evaluate pointwise CATE accuracy, ATE error, ranking quality for targeting, decision-theoretic policy regret, and calibration. Across connected settings, the proposed method is best or near-best and improves substantially over proxy-only, target-only, and transport baselines at small target sample sizes; in disconnected settings, it retains strong ranking performance for targeting while pointwise accuracy depends on the strength of the working transport condition.
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Machine Learning (Statistics)

Structure-Preserving Multi-View Embedding Using Gromov-Wasserstein Optimal Transport

Multi-view data analysis seeks to integrate multiple representations of the same samples in order to recover a coherent low-dimensional structure. Classical approaches often rely on feature concatenation or explicit alignment assumptions, which become restrictive under heterogeneous geometries or nonlinear distortions. In this work, we propose two geometry-aware multi-view embedding strategies grounded in Gromov-Wasserstein (GW) optimal transport. The first, termed Mean-GWMDS, aggregates view-specific relational information by averaging distance matrices and applying GW-based multidimensional scaling to obtain a representative embedding. The second strategy, referred to as Multi-GWMDS, adopts a selection-based paradigm in which multiple geometry-consistent candidate embeddings are generated via GW-based alignment and a representative embedding is selected. Experiments on synthetic manifolds and real-world datasets show that the proposed methods effectively preserve intrinsic relational structure across views. These results highlight GW-based approaches as a flexible and principled framework for multi-view representation learning.
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Statistical Methodology

Multi-Site Health Research Integrating Complementary Data Sources: A Scoping Review of Statistical Inference Methods for Vertically Partitioned Data

To address the multidimensional nature of health-related questions, advances in health research often require integrating information from various data sources within statistical analyses. When complementary information pertaining to the same set of individuals are distributed across different institutions, vertical methods make it possible to obtain analysis results without sharing or pooling individual-level data. To guide stakeholders toward a transparent use of vertical methods, this study aims to (1) Identify existing vertical methods enabling statistical inference; and (2) Characterize the methodological properties of these methods and the current extent of their use with health data. We conducted a scoping review using four interdisciplinary databases. We then systematically extracted the characteristics of identified vertical methods with respect to comparability with the pooled analysis, efficiency of communication schemes and confidentiality. We additionally screened studies that cited included articles to identify applications on vertically partitioned real-world health data. Among 2887 articles initially screened, 30 were included in the review. Inference for the linear and the logistic regression framework were the most frequent statistical inference tasks undertaken in proposed methods. Equivalence with the pooled analyses was not systematically addressed and most methods required multiple communications between participating parties. Almost all articles described their approach as privacy-preserving, although a minority provided privacy assessments. The scope of existing approaches enabling statistical inference for vertically partitioned data is still relatively limited. Most existing methods do not concurrently achieve results equivalent to centralized analyses, high communication efficiency, and guaranteed protection of individual-level data.
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All authors Marie-Pier Domingue, Simon Lévesque, Anita Burgun, Jean-François Ethier, Félix Camirand Lemyre

Thursday 2 April

Statistics Applications · Cross-listed from cs.SI

Structural Diversity Drives Disruptive Scientific Innovation

Scientific innovation increasingly depends on collaboration, yet the organizational structure that fosters breakthrough ideas remains poorly understood. Existing metrics - such as team size or compositional diversity - capture readily observable characteristics but not the deeper architecture of collaboration. We introduce Structural Diversity (SD): the extent to which a team bridges multiple distinct knowledge communities within its prior collaboration network. Using a century-scale dataset of 260 million scientific publications (1900-2025) and combining causal inference with a quasi-natural experiment based on a U.S. National Science Foundation policy change in 2012, we show that SD is a powerful and robust predictor of disruptive innovation, outperforming traditional team novelty indicators such as team freshness and edge density. Moreover, SD positively interacts with team size and is able to mitigate the well-known "curse of scale" by transforming scale from a liability into a resource for creative synthesis. We find that one mechanism underlying this effect is Disciplinary Integration (DI): teams with higher SD can more effectively combine heterogeneous knowledge into novel configurations. Our findings position SD as both a new theoretical construct and an actionable design principle for organizing scientific collaboration. By linking the architecture of team assembly to the dynamics of creative discovery, our work offers a structural explanation for how collective intelligence can be systematically engineered to foster disruptive innovation.
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All authors Yichun Peng, Saike He, Peijie Zhang, Kang Zhao, Yi Yang, Ning Zhang, Qingpeng Zhang, Daniel Dajun Zeng, Hao Peng

Machine Learning (Statistics)

Learning interacting particle systems from unlabeled data

Learning the potentials of interacting particle systems is a fundamental task across various scientific disciplines. A major challenge is that unlabeled data collected at discrete time points lack trajectory information due to limitations in data collection methods or privacy constraints. We address this challenge by introducing a trajectory-free self-test loss function that leverages the weak-form stochastic evolution equation of the empirical distribution. The loss function is quadratic in potentials, supporting parametric and nonparametric regression algorithms for robust estimation that scale to large, high-dimensional systems with big data. Systematic numerical tests show that our method outperforms baseline methods that regress on trajectories recovered via label matching, tolerating large observation time steps. We establish the convergence of parametric estimators as the sample size increases, providing a theoretical foundation for the proposed approach.
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Statistics Applications

Applied Statistics Requires Scientific Context

Statistical methods are indispensable to scientific inference. However, there exists a longstanding tension across a wide range of scientific disciplines about the role that “context” should play in the application of statistical methods and the interpretation of statistical results. Though frequently invoked, the notion of “scientific context” refers to at least two distinct concepts: a set of foundational nuanced and elusive background assumptions and substantive features of a given area of study that shape the validity and reliability of statistical methods; and more quantifiable contextual issues that affect the performance of statistical methods and interpretation of statistical results. I argue here that the application and interpretation of statistical methods requires careful consideration of foundational contextual issues. To motivate the arguments, I review a recent re-formulation of the $p$-value as a measure of divergence between an observed dataset and a set of assumptions used to construct statistical measures. I use this framework to illustrate the role that context plays in two randomized trials: on low-dose aspirin for pregnancy loss, and a new inhibitor of a key biochemical pathway affecting ankylosing spondylitis. Finally, I note that the adoption of low significance thresholds in genome-wide association studies and high energy particle physics has been successful more so because of extensive validity-checking gauntlets and contextual considerations that have accompanied these low thresholds, not because of the low thresholds themselves. I use these illustrations and arguments to suggest that (i) the adoption of a universal threshold for significance testing should be abandoned as a goal of statistics reform; and (ii) the validity and optimal use of applied statistical tools requires careful consideration of nuanced scientific context.
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Machine Learning (Statistics)

Reinforcement Learning from Human Feedback: A Statistical Perspective

Reinforcement learning from human feedback (RLHF) has emerged as a central framework for aligning large language models (LLMs) with human preferences. Despite its practical success, RLHF raises fundamental statistical questions because it relies on noisy, subjective, and often heterogeneous feedback to learn reward models and optimize policies. This survey provides a statistical perspective on RLHF, focusing primarily on the LLM alignment setting. We introduce the main components of RLHF, including supervised fine-tuning, reward modeling, and policy optimization, and relate them to familiar statistical ideas such as Bradley-Terry-Luce (BTL) model, latent utility estimation, active learning, experimental design, and uncertainty quantification. We review methods for learning reward functions from pairwise preference data and for optimizing policies through both two-stage RLHF pipelines and emerging one-stage approaches such as direct preference optimization. We further discuss recent extensions including reinforcement learning from AI feedback, inference-time algorithms, and reinforcement learning from verifiable rewards, as well as benchmark datasets, evaluation protocols, and open-source frameworks that support RLHF research. We conclude by highlighting open challenges in RLHF. An accompanying GitHub demo https://github.com/Pangpang-Liu/RLHF_demo illustrates key components of the RLHF pipeline.
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Statistical Methodology

Sequentially-Rerandomized Switchback Experiments

Large-scale online platforms and marketplace systems often evaluate new policies through experiments that randomize treatment across operational units (e.g., geographies, regions, or clusters) over many time periods. In these settings, standard A/B testing can be inefficient or unreliable due to a limited number of units, substantial cross-unit heterogeneity, non-stationarity, and potential carryover across periods. We propose Sequentially-Rerandomized Switchback Experiments (SRSB), a new experimental design that helps mitigate these challenges. SRSB re-randomizes treatment at each time period such as to enforce balance on pre-specified prognostic variables constructed from past observations. In the absence of carryover, SRSB improves precision by leveraging temporal dependence through balancing lagged outcomes and covariates; we develop finite-sample randomization inference under a sharp null as well as asymptotic inference as the number of periods grows. We then extend SRSB to settings with first-order carryover and introduce a blocked SRSB variant that rerandomizes within strata defined by the previous treatment to form stable and comparable "stay" groups. Extensive simulations demonstrate the practical gains and robustness of SRSB relative to standard switchback designs.
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All authors Zhenghao Zeng, Christopher Adjaho, Alonso Bucarey, Chao Qin, Ruixuan Zhang, Paul Hoban, Ramesh Johari, Stefan Wager

Machine Learning (Statistics) · Cross-listed from cs.LG

Time-Warping Recurrent Neural Networks for Transfer Learning

Dynamical systems describe how a physical system evolves over time. Physical processes can evolve faster or slower in different environmental conditions. We use time-warping as rescaling the time in a model of a physical system. This thesis proposes a new method of transfer learning for Recurrent Neural Networks (RNNs) based on time-warping. We prove that for a class of linear, first-order differential equations known as time lag models, an LSTM can approximate these systems with any desired accuracy, and the model can be time-warped while maintaining the approximation accuracy. The Time-Warping method of transfer learning is then evaluated in an applied problem on predicting fuel moisture content (FMC), an important concept in wildfire modeling. An RNN with LSTM recurrent layers is pretrained on fuels with a characteristic time scale of 10 hours, where there are large quantities of data available for training. The RNN is then modified with transfer learning to generate predictions for fuels with characteristic time scales of 1 hour, 100 hours, and 1000 hours. The Time-Warping method is evaluated against several known methods of transfer learning. The Time-Warping method produces predictions with an accuracy level comparable to the established methods, despite modifying only a small fraction of the parameters that the other methods modify.
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Statistics Applications

Remote, bivariate expert elicitation to determine the prior probability distribution for sample size calculation in a Bayesian non-inferiority multicenter randomized controlled trial (Croup Dosing Trial)

Prior distributions must be specified for the parameters of interest in a Bayesian clinical trial. When existing evidence on the effects of the trial interventions is limited, prior distributions can be constructed with expert elicitation. However, conventional elicitation requires face-to-face interactions and intensive pre-elicitation training, which can be infeasible. Our remote elicitation was based on established expert elicitation methods. We used bivariate prior distributions for dependencies between elicited quantities. We elicited a prior distribution for the Croup Dosing Trial, which will assess the number of return visits to the emergency department within 7 days in children with croup. This trial evaluates the non-inferiority of 0.15 mg/kg of dexamethasone, compared to the standard dose of 0.60 mg/kg to treat croup. We conducted three remote workshops to elicit expert beliefs on the efficacy of the two doses of dexamethasone. Each workshop consisted of two survey rounds, separated by a group discussion. Prior to the workshop, experts reviewed provided literature on the effects of the two doses of dexamethasone. Beliefs were aggregated with expert-specific bivariate distributions. The aggregated distribution and surveyed non-inferiority margin determined the sample size. Twelve emergency medicine physicians participated in our remote elicitation exercise. The elicitation generated a prior distribution centered at 6% for the 0.60 mg/kg dose and 8% for the 0.15 mg/kg dose. The aggregated prior distribution produced a sample size of 1850, based on a non-inferiority margin of 4%. We elicited a prior distribution that incorporated past evidence and expert opinion. The elicited prior is consistent with literature on the efficacy of the dexamethasone doses in treating croup. Our approach demonstrates the feasibility of remotely eliciting bivariate distributions for clinical trials.
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All authors Arlene Jiang, Alex Aregbesola, Apoorva Gangwani, Terry P. Klassen, Amy C. Plint, Elisabete Doyle, William Craig, Mohamed Eltorki, Banke Oketola, Hoda Badra, Yongdong Ouyang, Anna Heath

Statistical Methodology · Cross-listed from econ.EM

Measuring What Cannot Be Surveyed: LLMs as Instruments for Latent Cognitive Variables in Labor Economics

This paper establishes the theoretical and practical foundations for using Large Language Models (LLMs) as measurement instruments for latent economic variables – specifically variables that describe the cognitive content of occupational tasks at a level of granularity not achievable with existing survey instruments. I formalize four conditions under which LLM-generated scores constitute valid instruments: semantic exogeneity, construct relevance, monotonicity, and model invariance. I then apply this framework to the Augmented Human Capital Index (AHC_o), constructed from 18,796 O*NET task statements scored by Claude Haiku 4.5, and validated against six existing AI exposure indices. The index shows strong convergent validity (r = 0.85 with Eloundou GPT-gamma, r = 0.79 with Felten AIOE) and discriminant validity. Principal component analysis confirms that AI-related occupational measures span two distinct dimensions – augmentation and substitution. Inter-rater reliability across two LLM models (n = 3,666 paired scores) yields Pearson r = 0.76 and Krippendorff's alpha = 0.71. Prompt sensitivity analysis across four alternative framings shows that task-level rankings are robust. Obviously Related Instrumental Variables (ORIV) estimation recovers coefficients 25% larger than OLS, consistent with classical measurement error attenuation. The methodology generalizes beyond labor economics to any domain where semantic content must be quantified at scale.
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Statistics Applications

Varying risk exposure in auto insurance: a weighted tweedie framework for experience rating an cancellation penalties

This paper proposes a new family of Tweedie-based ratemaking models that explicitly account for mid-term policy cancellations. Using an automobile insurance dataset from a Canadian insurer, we document a marked difference in claims experience between policyholders who maintain their coverage until maturity and those who cancel their policies mid-term. Building on the classical Tweedie framework, we introduce flexible weighting functions and a premium penalty structure that depend on the level of exposure, allowing for a more realistic representation of the earned premium when coverage is interrupted before the end of the policy period. We compare several weighting structures within the Tweedie framework and examine their theoretical properties, as well as their empirical performance using deviance-based model comparison criteria, an area-between-curves criterion derived from concentration and Lorenz curves, and Murphy diagrams grounded in Bregman dominance. To operationalize the proposed models, monotonicity and non-negativity constraints are imposed on the penalty function, ensuring consistency with actuarial principles. Finally, using real-world data, we show that this approach provides both a strategic and competitive advantage: it allows the insurer to indirectly compensate for large losses through a cancellation surcharge, while preserving actuarial coherence and statistical consistency.
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Statistical Methodology · Cross-listed from q-bio.GN

Benchmarking Heritability Estimation Strategies Across 86 Configurations and Their Downstream Effect on Polygenic Risk Score Performance

Objective: SNP heritability estimates vary substantially across estimation strategies, yet the downstream consequences for polygenic risk score (PRS) construction remain poorly characterised. We systematically benchmarked heritability estimation configurations and assessed their propagation into downstream PRS performance. Methods: We benchmarked 86 heritability-estimation configurations spanning six tool families (GEMMA, GCTA, LDAK, DPR, LDSC, and SumHer) and ten method groups across 10 UK Biobank phenotypes, yielding 844 configuration-level estimates. Each estimate was propagated into GCTA-SBLUP and LDpred2-lassosum2 PRS frameworks and evaluated across five cross-validation folds using null, PRS-only, and full models. Eleven binary analytical contrasts were tested using Mann-Whitney U tests to identify drivers of heritability variability. Results: Heritability ranged from -0.862 to 2.735 (mean = 0.134, SD = 0.284), with 133 of 844 estimates (15.8%) being negative and concentrated in unconstrained estimation regimes. Ten of eleven analytical contrasts significantly affected heritability magnitude, with algorithm choice and GRM standardisation showing the largest effects. Despite this upstream variability, downstream PRS test performance was only weakly coupled to heritability magnitude: pooled Pearson correlations between h^2 and test AUC were r = -0.023 for GCTA-SBLUP and r = +0.014 for LDpred2-lassosum2, with both being non-significant. Conclusion: SNP heritability is best interpreted as a configuration-sensitive modelling parameter rather than a universally stable scalar input. Heritability estimates should always be reported alongside their full estimation specification, and downstream PRS performance is comparatively robust to moderate variation in the heritability input.
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Statistical Computation

Disentangled Deep Priors for Bayesian Inverse Problems

We propose a structured prior for high-dimensional Bayesian inverse problems based on a disentangled deep generative model whose latent space is partitioned into auxiliary variables aligned with known and interpretable physical parameters and residual variables capturing remaining unknown variability. This yields a hierarchical prior in which interpretable coordinates carry domain-relevant uncertainty while the residual coordinates retain the flexibility of deep generative models. By linearizing the generator, we characterize the induced prior covariance and derive conditions under which the posterior exhibits approximate block-diagonal structure in the latent variables, clarifying when representation-level disentanglement translates into a separation of uncertainty in the inverse problem. We formulate the resulting latent-space inverse problem and solve it using MAP estimation and Markov chain Monte Carlo (MCMC) sampling. On elliptic PDE inverse problems, such as conductivity identification and source identification, the approach matches an oracle Gaussian process prior under correct specification and provides substantial improvement under prior misspecification, while recovering interpretable physical parameters and producing spatially calibrated uncertainty estimates.
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Statistical Methodology

Bayesian covariance regression for differential network analysis of zero-inflated microbiome data

Microbial interaction networks can rewire in response to host and environmental factors, yet most existing methods for network estimation treat the covariance structure as static across samples. We propose TRECOR, a Bayesian covariance regression framework for inferring covariate-dependent microbial covariation networks from zero-inflated compositional count data. The method models microbiome counts through a latent multivariate normal distribution defined on the internal nodes of a phylogenetic tree, where both the mean and covariance of the latent variables depend on covariates. The covariance is decomposed into a sparse baseline component, representing a stable microbial covariation network, and a low-rank covariate-dependent perturbation that captures network rewiring. By exploiting the binomial factorization of the multinomial distribution under the logistic-tree-normal representation, the model achieves full conjugacy and posterior inference proceeds via an efficient Gibbs sampler. In simulations, TRECOR substantially outperforms covariance regression applied to transformed counts, demonstrating the importance of explicitly modeling the compositional sampling layer. Applied to gut microbiome data from 531 individuals across three countries, we find that age has the largest effect on microbial covariation, which is a pattern not revealed by mean-based analysis alone. The age-associated differential network is enriched for Enterobacteriaceae and related families, consistent with known developmental shifts in the gut microbiota, while country-associated differential networks implicate diet-related taxa.
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Machine Learning (Statistics) · Cross-listed from cs.LG

Smoothing the Landscape: Causal Structure Learning via Diffusion Denoising Objectives

Understanding causal dependencies in observational data is critical for informing decision-making. These relationships are often modeled as Bayesian Networks (BNs) and Directed Acyclic Graphs (DAGs). Existing methods, such as NOTEARS and DAG-GNN, often face issues with scalability and stability in high-dimensional data, especially when there is a feature-sample imbalance. Here, we show that the denoising score matching objective of diffusion models could smooth the gradients for faster, more stable convergence. We also propose an adaptive k-hop acyclicity constraint that improves runtime over existing solutions that require matrix inversion. We name this framework Denoising Diffusion Causal Discovery (DDCD). Unlike generative diffusion models, DDCD utilizes the reverse denoising process to infer a parameterized causal structure rather than to generate data. We demonstrate the competitive performance of DDCDs on synthetic benchmarking data. We also show that our methods are practically useful by conducting qualitative analyses on two real-world examples. Code is available at this url: https://github.com/haozhu233/ddcd.
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